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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062097 ID=TCONS_00062097|Name=TCONS_00062097|organism=Clytia hemisphaerica|type=transcript|length=1367bp
TGGTCGTATAATAAAGTTCAAACAATACAAAAAATCTTTCCGCCTTTTTC
ATTTCAACTTATTATTATATCATCGTCAAACAAAAcaagagaaagaaaga
aagaattaAAAAGACGGTAAATATAAAATGCCATCCATGATTTTAATGAA
ATCATCATACGGTTTTCAACTCATTAATCTTCCAACCTTCGAGCAGTGAA
CTTGTCTATTCGAGCAAAATTCCAACGTAGGAACTACACTCAAAAAAAGG
AAGATGAAGGCTGACATAAGTTATGGAGGTATCAGCCCTGGTGAAAACCT
TATTAATTTCATCAACAATGCGTCGACGTGCGTCAAATCGGTTTTATCAA
AACCCGGTAGCTTCAAACGGAATACCAATCACCGCCGTTTCTTACAAAAA
CAGTTACGGCAGAACGTTCAAGATAACATAAAGACTTTACGTGAGAACGC
GACAACGGCGAAACGTACGAAAGCACAATCAACGCAAGAACAAGACACTG
GTGTAAAACTCGATGAAAACGAACCACCAAGTccagcaaaacagatcgaa
agtCACCCAATAGCACCAAAGGCGAGCTTCAAAACTAAACAGAAAACGAT
TCGTAAAAAACGGCGTTATAACCCTATCAGGTTATCACCACCACCGATGC
TTCAGCCGCCGGTGGCGCTTTTGATTCCGTCACCAATGTCCGAATGTGCG
CCTGAAGTTTCTTTACCTGATCTACAGAAATACTTCCAACACGCATTAGC
AAAGGAGACAACTATCTTACCAAGTCAAACATATTTTAATTCAACACCTA
GAGACTTTGGCAACAACTATCAACCTATACCTTCGCCAGACAATTCAGTT
TTTGAGAACAATACACAATACTTCGATATGGGAGTACCAGCACAGACATT
CTTAACCATACCGGCACCACATGTGGCGCGCAAAAGTTCATCATCTTCTT
ATGCGTCATCCGTTTCAACGACGGAAGAGGATTTCGGATTCTCGGATTTC
TTATCGGGCGAGGATTTAATGCGTAGCTTAGAATTCAATGACTTATTTAT
CCCTGAGAAATCAGGAAATGCAGACTTTTTGATGGGATCATCAAATCCAT
TTGAACAGGCTTATGAAAGACAGATGCAATACTTAGCACAACTTGAAGCA
ATCGAGGCATGTTATGAAGCACGAGAAAATGACTTGCTTATCAAtttcat
tgaaatgaaaaagtatGGAGTGTAAagtattaaagttttttttgaaataa
ttttaaaaataaattttgtataatatattttaatgaataaaagaaatttg
taaattttgaaacatttgtaAATGATAGACAAAATTATATTCgaatgaag
ataaaaatgaaaactag Run BLAST on NCBI protein sequence of TCONS_00062097-protein >TCONS_00062097-protein ID=TCONS_00062097-protein|Name=TCONS_00062097-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MKADISYGGISPGENLINFINNASTCVKSVLSKPGSFKRNTNHRRFLQKQ
LRQNVQDNIKTLRENATTAKRTKAQSTQEQDTGVKLDENEPPSPAKQIES
HPIAPKASFKTKQKTIRKKRRYNPIRLSPPPMLQPPVALLIPSPMSECAP
EVSLPDLQKYFQHALAKETTILPSQTYFNSTPRDFGNNYQPIPSPDNSVF
ENNTQYFDMGVPAQTFLTIPAPHVARKSSSSSYASSVSTTEEDFGFSDFL
SGEDLMRSLEFNDLFIPEKSGNADFLMGSSNPFEQAYERQMQYLAQLEAI
EACYEARENDLLINFIEMKKYGV Run BLAST on NCBI transcript from alignment at scaffold_361:292960..294326 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062097 ID=TCONS_00062097|Name=TCONS_00062097|organism=Clytia hemisphaerica|type=transcript|length=1367bp|location=Sequence derived from alignment at scaffold_361:292960..294326 (Clytia hemisphaerica)
ctagttttcatttttatcttcattcGAATATAATTTTGTCTATCATTtac
aaatgtttcaaaatttacaaatttcttttattcattaaaatatattatac
aaaatttatttttaaaattatttcaaaaaaaactttaatactTTACACTC
CatactttttcatttcaatgaaaTTGATAAGCAAGTCATTTTCTCGTGCT
TCATAACATGCCTCGATTGCTTCAAGTTGTGCTAAGTATTGCATCTGTCT
TTCATAAGCCTGTTCAAATGGATTTGATGATCCCATCAAAAAGTCTGCAT
TTCCTGATTTCTCAGGGATAAATAAGTCATTGAATTCTAAGCTACGCATT
AAATCCTCGCCCGATAAGAAATCCGAGAATCCGAAATCCTCTTCCGTCGT
TGAAACGGATGACGCATAAGAAGATGATGAACTTTTGCGCGCCACATGTG
GTGCCGGTATGGTTAAGAATGTCTGTGCTGGTACTCCCATATCGAAGTAT
TGTGTATTGTTCTCAAAAACTGAATTGTCTGGCGAAGGTATAGGTTGATA
GTTGTTGCCAAAGTCTCTAGGTGTTGAATTAAAATATGTTTGACTTGGTA
AGATAGTTGTCTCCTTTGCTAATGCGTGTTGGAAGTATTTCTGTAGATCA
GGTAAAGAAACTTCAGGCGCACATTCGGACATTGGTGACGGAATCAAAAG
CGCCACCGGCGGCTGAAGCATCGGTGGTGGTGATAACCTGATAGGGTTAT
AACGCCGTTTTTTACGAATCGTTTTCTGTTTAGTTTTGAAGCTCGCCTTT
GGTGCTATTGGGTGactttcgatctgttttgctggACTTGGTGGTTCGTT
TTCATCGAGTTTTACACCAGTGTCTTGTTCTTGCGTTGATTGTGCTTTCG
TACGTTTCGCCGTTGTCGCGTTCTCACGTAAAGTCTTTATGTTATCTTGA
ACGTTCTGCCGTAACTGTTTTTGTAAGAAACGGCGGTGATTGGTATTCCG
TTTGAAGCTACCGGGTTTTGATAAAACCGATTTGACGCACGTCGACGCAT
TGTTGATGAAATTAATAAGGTTTTCACCAGGGCTGATACCTCCATAACTT
ATGTCAGCCTTCATCTTCCTTTTTTTGAGTGTAGTTCCTACGTTGGAATT
TTGCTCGAATAGACAAGTTCACTGCTCGAAGGTTGGAAGATTAATGAGTT
GAAAACCGTATGATGATTTCATTAAAATCATGGATGGCATTTTATATTTA
CCGTCTTTTtaattctttctttctttctcttgTTTTGTTTGACGATGATA
TAATAATAAGTTGAAATGAAAAAGGCGGAAAGATTTTTTGTATTGTTTGA
ACTTTATTATACGACCA Coding sequence (CDS) from alignment at scaffold_361:292960..294326 >TCONS_00062097 ID=TCONS_00062097|Name=TCONS_00062097|organism=Clytia hemisphaerica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_361:292960..294326 (Clytia hemisphaerica)
TTACACTCCatactttttcatttcaatgaaaTTGATAAGCAAGTCATTTT
CTCGTGCTTCATAACATGCCTCGATTGCTTCAAGTTGTGCTAAGTATTGC
ATCTGTCTTTCATAAGCCTGTTCAAATGGATTTGATGATCCCATCAAAAA
GTCTGCATTTCCTGATTTCTCAGGGATAAATAAGTCATTGAATTCTAAGC
TACGCATTAAATCCTCGCCCGATAAGAAATCCGAGAATCCGAAATCCTCT
TCCGTCGTTGAAACGGATGACGCATAAGAAGATGATGAACTTTTGCGCGC
CACATGTGGTGCCGGTATGGTTAAGAATGTCTGTGCTGGTACTCCCATAT
CGAAGTATTGTGTATTGTTCTCAAAAACTGAATTGTCTGGCGAAGGTATA
GGTTGATAGTTGTTGCCAAAGTCTCTAGGTGTTGAATTAAAATATGTTTG
ACTTGGTAAGATAGTTGTCTCCTTTGCTAATGCGTGTTGGAAGTATTTCT
GTAGATCAGGTAAAGAAACTTCAGGCGCACATTCGGACATTGGTGACGGA
ATCAAAAGCGCCACCGGCGGCTGAAGCATCGGTGGTGGTGATAACCTGAT
AGGGTTATAACGCCGTTTTTTACGAATCGTTTTCTGTTTAGTTTTGAAGC
TCGCCTTTGGTGCTATTGGGTGactttcgatctgttttgctggACTTGGT
GGTTCGTTTTCATCGAGTTTTACACCAGTGTCTTGTTCTTGCGTTGATTG
TGCTTTCGTACGTTTCGCCGTTGTCGCGTTCTCACGTAAAGTCTTTATGT
TATCTTGAACGTTCTGCCGTAACTGTTTTTGTAAGAAACGGCGGTGATTG
GTATTCCGTTTGAAGCTACCGGGTTTTGATAAAACCGATTTGACGCACGT
CGACGCATTGTTGATGAAATTAATAAGGTTTTCACCAGGGCTGATACCTC
CATAACTTATGTCAGCCTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062097-exon-scaffold_361-1491911889:292960..294326 | TCONS_00062097-exon-scaffold_361-1491911889:292960..294326 | Clytia hemisphaerica | exon |
| TCONS_00062097-exon-scaffold_361-1510915933:292960..294326 | TCONS_00062097-exon-scaffold_361-1510915933:292960..294326 | Clytia hemisphaerica | exon |
| TCONS_00062097-exon-scaffold_361-1575043694:292960..294326 | TCONS_00062097-exon-scaffold_361-1575043694:292960..294326 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:292960..294326 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029359 | FAM181 |
Blast
The following BLAST results are available for this feature:
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