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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062114 ID=TCONS_00062114|Name=TCONS_00062114|organism=Clytia hemisphaerica|type=transcript|length=964bp
AGCTGACTCTGGTTGATAAAAGTATCCAAGCCAATGTGAAGAACAAGTGT
ATCTTCCCTGGCTGCAACAAAGCTTTCTACCATAAATCACGAATGGTGCA
ACATTTGCAAGAAGAACACAAGATTCCTGTTGAGAGTGAAACCAAAAGAT
TTGATAGTttggaagaattttttgaatggaaagaaTTAGAGGAAACAACA
AACTTTGTTTATTTCCCAAGAAAAGAATCTAAGGCTACGTCAAATGGCAT
TCGACATGAAACATATGTCTGTCAATATAAAGGAAAAAGACAACCTGCTG
CATTTAAAAACTCCATAGGGAAAAGAAAAGAAGCCAAGAAGCATCCAGTT
TGTCCTGCACGTATGCTCATCACAATCAAGACATCCAAAAAGAAGGTTGA
CCTTTCGTTGAAGTACATTAAGTCACACAATCACCCTATCTGTTGTGAAG
ACATCAAAAATAAACCCATCTCAAACCAAATGAaggatgaaatcaaagaa
aagttGTTGGAAAATAAATCAATAGATGATGTTATCTCAGAACTGCAGCG
GGAAGTAGTTGATGAACCGAGCGGAAGTTCTTTGCAGAAAGTTTTCATGG
AAAGACATCGGGTCAGATACATTCAACAGAAATTAAACCTCCCCAAAAGC
AACAATGAGAAGACTACATCAATAACCATAGAAAACCGATTGAAATCACT
CACAACACCTGACTTCAACCCTATACTGCTTTATAAACCAGCTCAAGCTC
TGATTGAAACAGATGGACCGAATTTGGACACCGAAACGTTTACCTTTGGG
ATTCAAACGAAGGAACAAAGCCAATTGTTTCAGAAATATGCAACAGGGAT
TGTGCTTTTTGAACTGGCAATGCCGTCCACATTCATACCTTATTACATCT
TGACATTGAAAGTTGTTGATGAACTAAAACAGGCTTACAATGTTGCCCAT
TTGATATCAAGCGT Run BLAST on NCBI protein sequence of TCONS_00062114-protein >TCONS_00062114-protein ID=TCONS_00062114-protein|Name=TCONS_00062114-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
LTLVDKSIQANVKNKCIFPGCNKAFYHKSRMVQHLQEEHKIPVESETKRF
DSLEEFFEWKELEETTNFVYFPRKESKATSNGIRHETYVCQYKGKRQPAA
FKNSIGKRKEAKKHPVCPARMLITIKTSKKKVDLSLKYIKSHNHPICCED
IKNKPISNQMKDEIKEKLLENKSIDDVISELQREVVDEPSGSSLQKVFME
RHRVRYIQQKLNLPKSNNEKTTSITIENRLKSLTTPDFNPILLYKPAQAL
IETDGPNLDTETFTFGIQTKEQSQLFQKYATGIVLFELAMPSTFIPYYIL
TLKVVDELKQAYNVAHLISS Run BLAST on NCBI transcript from alignment at scaffold_361:912319..913282 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062114 ID=TCONS_00062114|Name=TCONS_00062114|organism=Clytia hemisphaerica|type=transcript|length=964bp|location=Sequence derived from alignment at scaffold_361:912319..913282 (Clytia hemisphaerica)
ACGCTTGATATCAAATGGGCAACATTGTAAGCCTGTTTTAGTTCATCAAC
AACTTTCAATGTCAAGATGTAATAAGGTATGAATGTGGACGGCATTGCCA
GTTCAAAAAGCACAATCCCTGTTGCATATTTCTGAAACAATTGGCTTTGT
TCCTTCGTTTGAATCCCAAAGGTAAACGTTTCGGTGTCCAAATTCGGTCC
ATCTGTTTCAATCAGAGCTTGAGCTGGTTTATAAAGCAGTATAGGGTTGA
AGTCAGGTGTTGTGAGTGATTTCAATCGGTTTTCTATGGTTATTGATGTA
GTCTTCTCATTGTTGCTTTTGGGGAGGTTTAATTTCTGTTGAATGTATCT
GACCCGATGTCTTTCCATGAAAACTTTCTGCAAAGAACTTCCGCTCGGTT
CATCAACTACTTCCCGCTGCAGTTCTGAGATAACATCATCTATTGATTTA
TTTTCCAACaacttttctttgatttcatcctTCATTTGGTTTGAGATGGG
TTTATTTTTGATGTCTTCACAACAGATAGGGTGATTGTGTGACTTAATGT
ACTTCAACGAAAGGTCAACCTTCTTTTTGGATGTCTTGATTGTGATGAGC
ATACGTGCAGGACAAACTGGATGCTTCTTGGCTTCTTTTCTTTTCCCTAT
GGAGTTTTTAAATGCAGCAGGTTGTCTTTTTCCTTTATATTGACAGACAT
ATGTTTCATGTCGAATGCCATTTGACGTAGCCTTAGATTCTTTTCTTGGG
AAATAAACAAAGTTTGTTGTTTCCTCTAAttctttccattcaaaaaattc
ttccaaACTATCAAATCTTTTGGTTTCACTCTCAACAGGAATCTTGTGTT
CTTCTTGCAAATGTTGCACCATTCGTGATTTATGGTAGAAAGCTTTGTTG
CAGCCAGGGAAGATACACTTGTTCTTCACATTGGCTTGGATACTTTTATC
AACCAGAGTCAGCT Coding sequence (CDS) from alignment at scaffold_361:912319..913282 >TCONS_00062114 ID=TCONS_00062114|Name=TCONS_00062114|organism=Clytia hemisphaerica|type=CDS|length=960bp|location=Sequence derived from alignment at scaffold_361:912319..913282 (Clytia hemisphaerica)
GCTTGATATCAAATGGGCAACATTGTAAGCCTGTTTTAGTTCATCAACAA
CTTTCAATGTCAAGATGTAATAAGGTATGAATGTGGACGGCATTGCCAGT
TCAAAAAGCACAATCCCTGTTGCATATTTCTGAAACAATTGGCTTTGTTC
CTTCGTTTGAATCCCAAAGGTAAACGTTTCGGTGTCCAAATTCGGTCCAT
CTGTTTCAATCAGAGCTTGAGCTGGTTTATAAAGCAGTATAGGGTTGAAG
TCAGGTGTTGTGAGTGATTTCAATCGGTTTTCTATGGTTATTGATGTAGT
CTTCTCATTGTTGCTTTTGGGGAGGTTTAATTTCTGTTGAATGTATCTGA
CCCGATGTCTTTCCATGAAAACTTTCTGCAAAGAACTTCCGCTCGGTTCA
TCAACTACTTCCCGCTGCAGTTCTGAGATAACATCATCTATTGATTTATT
TTCCAACaacttttctttgatttcatcctTCATTTGGTTTGAGATGGGTT
TATTTTTGATGTCTTCACAACAGATAGGGTGATTGTGTGACTTAATGTAC
TTCAACGAAAGGTCAACCTTCTTTTTGGATGTCTTGATTGTGATGAGCAT
ACGTGCAGGACAAACTGGATGCTTCTTGGCTTCTTTTCTTTTCCCTATGG
AGTTTTTAAATGCAGCAGGTTGTCTTTTTCCTTTATATTGACAGACATAT
GTTTCATGTCGAATGCCATTTGACGTAGCCTTAGATTCTTTTCTTGGGAA
ATAAACAAAGTTTGTTGTTTCCTCTAAttctttccattcaaaaaattctt
ccaaACTATCAAATCTTTTGGTTTCACTCTCAACAGGAATCTTGTGTTCT
TCTTGCAAATGTTGCACCATTCGTGATTTATGGTAGAAAGCTTTGTTGCA
GCCAGGGAAGATACACTTGTTCTTCACATTGGCTTGGATACTTTTATCAA
CCAGAGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062114-exon-scaffold_361-1491911889:912319..913282 | TCONS_00062114-exon-scaffold_361-1491911889:912319..913282 | Clytia hemisphaerica | exon |
| TCONS_00062114-exon-scaffold_361-1510915933:912319..913282 | TCONS_00062114-exon-scaffold_361-1510915933:912319..913282 | Clytia hemisphaerica | exon |
| TCONS_00062114-exon-scaffold_361-1575043694:912319..913282 | TCONS_00062114-exon-scaffold_361-1575043694:912319..913282 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:912319..913282 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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