TCONS_00062129 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062129
Unique NameTCONS_00062129
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length722

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062129 ID=TCONS_00062129|Name=TCONS_00062129|organism=Clytia hemisphaerica|type=transcript|length=722bp
tcaaaaaaagTGATAGTTTGTGGAGATAGTATTTTGAATGGCGTAGATGG
AAATGGTATTTCAACTAAGAAAGCAAGAGCTGTTGTCAGAAGTTTTCCTG
GAGCTACCACAAGTGATATGATCGATTTTATAAAACCTTTGGCAAAGAAA
AAACCTGACATGATGATTATTCATGCTGGGACAAATGATTTGACAAAGGC
CAatatggaaaattttggaatcgTTCTTGCAGAAATCAAACGAGAATCAC
CTGATACTGAGGTTGTTCTATCAAGTTTATGCATTCGAAATGACAAACAA
AATGTAAGTAAACTGGTTAAACCTATGAATGAAAAGCTGAAAGAATTCTG
TGATACGAATAAAATCAAGTTTATCAATAATGACGGAATTGACTCATCGT
GTTTATCGAAGAGAAAGCTTcatttgaatcaaaaataacttgaaTATGAA
GGAATATGTTCAACAATGATTGCCTGCTTTTAGTATAGTTGGGAATAAAG
CTCAAAAAGCTTTATCTCTTAAAGATCTCAAATATAAGAACcctgaaaat
atcattttataaaaataaaaataaaaatattttcagttcgAAATAAACTT
GATAGTCTTGTTACCTTTTTAGACGGAAGTGTTGATGTTTTCAGTATTGC
GGAAACAAAAATCGACTCTTCCTTTCCAGAGAGTCAATTCTGCCTAAAAG
GCTTTAAAAAACCCTACAGGCT
Run BLAST on NCBI

protein sequence of TCONS_00062129-protein

>TCONS_00062129-protein ID=TCONS_00062129-protein|Name=TCONS_00062129-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
SKKVIVCGDSILNGVDGNGISTKKARAVVRSFPGATTSDMIDFIKPLAKK
KPDMMIIHAGTNDLTKANMENFGIVLAEIKRESPDTEVVLSSLCIRNDKQ
NVSKLVKPMNEKLKEFCDTNKIKFINNDGIDSSCLSKRKLHLNQK
Run BLAST on NCBI

transcript from alignment at scaffold_361:1339260..1339981

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062129 ID=TCONS_00062129|Name=TCONS_00062129|organism=Clytia hemisphaerica|type=transcript|length=722bp|location=Sequence derived from alignment at scaffold_361:1339260..1339981 (Clytia hemisphaerica)
AGCCTGTAGGGTTTTTTAAAGCCTTTTAGGCAGAATTGACTCTCTGGAAA
GGAAGAGTCGATTTTTGTTTCCGCAATACTGAAAACATCAACACTTCCGT
CTAAAAAGGTAACAAGACTATCAAGTTTATTTcgaactgaaaatattttt
atttttatttttataaaatgatattttcaggGTTCTTATATTTGAGATCT
TTAAGAGATAAAGCTTTTTGAGCTTTATTCCCAACTATACTAAAAGCAGG
CAATCATTGTTGAACATATTCCTTCATAttcaagttatttttgattcaaa
tgAAGCTTTCTCTTCGATAAACACGATGAGTCAATTCCGTCATTATTGAT
AAACTTGATTTTATTCGTATCACAGAATTCTTTCAGCTTTTCATTCATAG
GTTTAACCAGTTTACTTACATTTTGTTTGTCATTTCGAATGCATAAACTT
GATAGAACAACCTCAGTATCAGGTGATTCTCGTTTGATTTCTGCAAGAAc
gattccaaaattttccatatTGGCCTTTGTCAAATCATTTGTCCCAGCAT
GAATAATCATCATGTCAGGTTTTTTCTTTGCCAAAGGTTTTATAAAATCG
ATCATATCACTTGTGGTAGCTCCAGGAAAACTTCTGACAACAGCTCTTGC
TTTCTTAGTTGAAATACCATTTCCATCTACGCCATTCAAAATACTATCTC
CACAAACTATCActttttttga

Coding sequence (CDS) from alignment at scaffold_361:1339260..1339981

>TCONS_00062129 ID=TCONS_00062129|Name=TCONS_00062129|organism=Clytia hemisphaerica|type=CDS|length=438bp|location=Sequence derived from alignment at scaffold_361:1339260..1339981 (Clytia hemisphaerica)
ttatttttgattcaaatgAAGCTTTCTCTTCGATAAACACGATGAGTCAA
TTCCGTCATTATTGATAAACTTGATTTTATTCGTATCACAGAATTCTTTC
AGCTTTTCATTCATAGGTTTAACCAGTTTACTTACATTTTGTTTGTCATT
TCGAATGCATAAACTTGATAGAACAACCTCAGTATCAGGTGATTCTCGTT
TGATTTCTGCAAGAAcgattccaaaattttccatatTGGCCTTTGTCAAA
TCATTTGTCCCAGCATGAATAATCATCATGTCAGGTTTTTTCTTTGCCAA
AGGTTTTATAAAATCGATCATATCACTTGTGGTAGCTCCAGGAAAACTTC
TGACAACAGCTCTTGCTTTCTTAGTTGAAATACCATTTCCATCTACGCCA
TTCAAAATACTATCTCCACAAACTATCActttttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038952XLOC_038952Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062129-exon-scaffold_361-1491911889:1339260..1339981TCONS_00062129-exon-scaffold_361-1491911889:1339260..1339981Clytia hemisphaericaexon
TCONS_00062129-exon-scaffold_361-1510915933:1339260..1339981TCONS_00062129-exon-scaffold_361-1510915933:1339260..1339981Clytia hemisphaericaexon
TCONS_00062129-exon-scaffold_361-1575043694:1339260..1339981TCONS_00062129-exon-scaffold_361-1575043694:1339260..1339981Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062129-proteinTCONS_00062129-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:1339260..1339981 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.138315	0	0.34187	0.153216	1.79984	2.06666	1.33369	1.9145	0.291388	0.649676	0	0.59876	0.183978	0.143297	0.0785397	0.144029	0.363413	0.106425	0	0	0	0	0	0	0.148502	0.463872	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013830SGNH_hydro
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062129 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top