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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062135 ID=TCONS_00062135|Name=TCONS_00062135|organism=Clytia hemisphaerica|type=transcript|length=1164bp
ACTTAATAAAAGAAAACAATCAAGACTGGTTTGACAACCCTCTTAGAAAA
AGGAATAGATTGGTTTAGCTGATTATGTAATCAATTTTCTTATCCGTCAA
TCACAACAAAGGAATCTCTGGACGGCTATATAAAAAGAAGCTGAGAATTG
TGATTTGGTCAGTATATATTTAAAGGAGCTTTCATAAAGATCAAAGCTTG
AGGTTCGGTAACACTTCAACATTCACAGACTTTTTATAGAGCTGAATATA
TAATCGTATTACAAGAAAGAAACTTTCAGACGTTCATCAACAAGATTTTG
AAACAGTAAATATCGAAATTTGTTTAGAAGAAAAAATGGAAGGCTGTTAT
GCATATCCACCTTTTACGAAAGTTCCAACCATGGTTTTAAGATGGTCCAT
GGTGAATAAAGGTTTCGAACAAACACCGCCTGACGATTTGGATGAGTTTG
CTATCGGAAAATCCATCTCAATGAACTTAAGGAAGAGCGGTCACATGTGC
GTTGTTTTGCGTCCTGAATTCGGCCGCGGACGAAACGGTGGACTTCAGAA
AGTGACCATTGAGTGTCCAGCAACCGGACAAGTATTGGATACCTATCATT
TTAAACGAGGAATCGAAGGTTATGAAAGAATATCCAAAGAATGGAAGAGA
TATCGAGTTTTCTATCCAACAATTGAAGGTCGTTGCGTGtaataaaattc
ataaaaactttgacttaattttttgtttgttttttttccgtGTTTTTGTA
GCTGTATATAGATGTatttatttaaagattttgagacGTTAAATCTCTTG
TAAATAGCAATTTAGAAGACCACAAAATATTCCTTTACTTCTAAGCAGAA
CTTTTCAAAGTAAGAAATCAAATGTCTCACTGCAAAACttctttgtttta
aaatttagaatatgATAGTCACTGGCTGACTAAAGTAGTATTTCATAGGC
TTAACGCGTCCTTAAAAATTTATAGGATTTATCTTTCATTtatcatattt
gttttgataaaaatttgtaTCATATTAAACTAACCAAAAATATAGTatca
tcaaaatagaaaaaatactgaaaatttaAATCATTATCTATCATACCTCT
GTCAATAAGGAAGTCTTAGCTAATTGGGAAAATGTGCTTTCATTTGGAAt
tcaaaaaaggctgt Run BLAST on NCBI protein sequence of TCONS_00062135-protein >TCONS_00062135-protein ID=TCONS_00062135-protein|Name=TCONS_00062135-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MEGCYAYPPFTKVPTMVLRWSMVNKGFEQTPPDDLDEFAIGKSISMNLRK
SGHMCVVLRPEFGRGRNGGLQKVTIECPATGQVLDTYHFKRGIEGYERIS
KEWKRYRVFYPTIEGRCV Run BLAST on NCBI transcript from alignment at scaffold_361:1511677..1512840 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062135 ID=TCONS_00062135|Name=TCONS_00062135|organism=Clytia hemisphaerica|type=transcript|length=1164bp|location=Sequence derived from alignment at scaffold_361:1511677..1512840 (Clytia hemisphaerica)
acagccttttttgaaTTCCAAATGAAAGCACATTTTCCCAATTAGCTAAG
ACTTCCTTATTGACAGAGGTATGATAGATAATGATTtaaattttcagtat
tttttctattttgatgatACTATATTTTTGGTTAGTTTAATATGAtacaa
atttttatcaaaacaaatatgataAATGAAAGATAAATCCTATAAATTTT
TAAGGACGCGTTAAGCCTATGAAATACTACTTTAGTCAGCCAGTGACTAT
catattctaaattttaaaacaaagaaGTTTTGCAGTGAGACATTTGATTT
CTTACTTTGAAAAGTTCTGCTTAGAAGTAAAGGAATATTTTGTGGTCTTC
TAAATTGCTATTTACAAGAGATTTAACgtctcaaaatctttaaataaatA
CATCTATATACAGCTACAAAAACacggaaaaaaaacaaacaaaaaattaa
gtcaaagtttttatgaattttattaCACGCAACGACCTTCAATTGTTGGA
TAGAAAACTCGATATCTCTTCCATTCTTTGGATATTCTTTCATAACCTTC
GATTCCTCGTTTAAAATGATAGGTATCCAATACTTGTCCGGTTGCTGGAC
ACTCAATGGTCACTTTCTGAAGTCCACCGTTTCGTCCGCGGCCGAATTCA
GGACGCAAAACAACGCACATGTGACCGCTCTTCCTTAAGTTCATTGAGAT
GGATTTTCCGATAGCAAACTCATCCAAATCGTCAGGCGGTGTTTGTTCGA
AACCTTTATTCACCATGGACCATCTTAAAACCATGGTTGGAACTTTCGTA
AAAGGTGGATATGCATAACAGCCTTCCATTTTTTCTTCTAAACAAATTTC
GATATTTACTGTTTCAAAATCTTGTTGATGAACGTCTGAAAGTTTCTTTC
TTGTAATACGATTATATATTCAGCTCTATAAAAAGTCTGTGAATGTTGAA
GTGTTACCGAACCTCAAGCTTTGATCTTTATGAAAGCTCCTTTAAATATA
TACTGACCAAATCACAATTCTCAGCTTCTTTTTATATAGCCGTCCAGAGA
TTCCTTTGTTGTGATTGACGGATAAGAAAATTGATTACATAATCAGCTAA
ACCAATCTATTCCTTTTTCTAAGAGGGTTGTCAAACCAGTCTTGATTGTT
TTCTTTTATTAAGT Coding sequence (CDS) from alignment at scaffold_361:1511677..1512840 >TCONS_00062135 ID=TCONS_00062135|Name=TCONS_00062135|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at scaffold_361:1511677..1512840 (Clytia hemisphaerica)
ttaCACGCAACGACCTTCAATTGTTGGATAGAAAACTCGATATCTCTTCC
ATTCTTTGGATATTCTTTCATAACCTTCGATTCCTCGTTTAAAATGATAG
GTATCCAATACTTGTCCGGTTGCTGGACACTCAATGGTCACTTTCTGAAG
TCCACCGTTTCGTCCGCGGCCGAATTCAGGACGCAAAACAACGCACATGT
GACCGCTCTTCCTTAAGTTCATTGAGATGGATTTTCCGATAGCAAACTCA
TCCAAATCGTCAGGCGGTGTTTGTTCGAAACCTTTATTCACCATGGACCA
TCTTAAAACCATGGTTGGAACTTTCGTAAAAGGTGGATATGCATAACAGC
CTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062135-exon-scaffold_361-1491911889:1511677..1512840 | TCONS_00062135-exon-scaffold_361-1491911889:1511677..1512840 | Clytia hemisphaerica | exon |
| TCONS_00062135-exon-scaffold_361-1510915933:1511677..1512840 | TCONS_00062135-exon-scaffold_361-1510915933:1511677..1512840 | Clytia hemisphaerica | exon |
| TCONS_00062135-exon-scaffold_361-1575043694:1511677..1512840 | TCONS_00062135-exon-scaffold_361-1575043694:1511677..1512840 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:1511677..1512840 . |
Blast
The following BLAST results are available for this feature:
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