TCONS_00062139 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062139
Unique NameTCONS_00062139
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length302

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062139 ID=TCONS_00062139|Name=TCONS_00062139|organism=Clytia hemisphaerica|type=transcript|length=302bp
NNAGGAGTTATGAGCAAGTGAaggcaaaatgtaaacaattaaAATGATAC
ATACAAGTTAAGTATAGTGCTCATTGAcacctttacaaaaagaatcATAA
TTTAAGTCAGATATGAGATTCACGGGTAATTCATTCCACAGGCGGATGGT
TGACGGGAAGTAACTGATTCATATGTTTGAATCCTTGCATTGATTGTAAT
AAGTTTAAGATGAGTGTTACGTGCACGAGGTGCAAGAGCGGATAAAGATT
CAACTTTGCCATGAAGAATTTTATGCATGAATTTAACTTTATTTGCTGTT
CT
Run BLAST on NCBI

transcript from alignment at scaffold_361:1585532..1585833

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062139 ID=TCONS_00062139|Name=TCONS_00062139|organism=Clytia hemisphaerica|type=transcript|length=302bp|location=Sequence derived from alignment at scaffold_361:1585532..1585833 (Clytia hemisphaerica)
AGAACAGCAAATAAAGTTAAATTCATGCATAAAATTCTTCATGGCAAAGT
TGAATCTTTATCCGCTCTTGCACCTCGTGCACGTAACACTCATCTTAAAC
TTATTACAATCAATGCAAGGATTCAAACATATGAATCAGTTACTTCCCGT
CAACCATCCGCCTGTGGAATGAATTACCCGTGAATCTCATATCTGACTTA
AATTATgattctttttgtaaaggtgTCAATGAGCACTATACTTAACTTGT
ATGTATCATTttaattgtttacattttgcctTCACTTGCTCATAACTCCT
NN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038962XLOC_038962Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062139-exon-scaffold_361-1491911889:1585532..1585833TCONS_00062139-exon-scaffold_361-1491911889:1585532..1585833Clytia hemisphaericaexon
TCONS_00062139-exon-scaffold_361-1510915933:1585532..1585833TCONS_00062139-exon-scaffold_361-1510915933:1585532..1585833Clytia hemisphaericaexon
TCONS_00062139-exon-scaffold_361-1575043694:1585532..1585833TCONS_00062139-exon-scaffold_361-1575043694:1585532..1585833Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:1585532..1585833 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.4529	7.59559	7.31244	9.38172	3.91381	2.03037	1.58129	2.75189	2.24777	6.7617	3.86063	4.06052	4.05488	4.17249	1.73102	4.0524	0.858176	2.05241	0.810146	4.88142	4.52846	7.06433	3.0584	2.86886	0	3.65134	7.16429	6.72732	1.26883	4.30914
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062139 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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