TCONS_00062148 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062148
Unique NameTCONS_00062148
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length573

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062148 ID=TCONS_00062148|Name=TCONS_00062148|organism=Clytia hemisphaerica|type=transcript|length=573bp
GTGAATAACACTCAAGGAATGCTCAGTGAACGATGTCCAGATATGTTTGG
CTTCTACCACCATTCAAATAACACCATGTTAATCTCCAATACATTACGAA
GTATCACCATCTTGCAACTCTCATCCAATGGCCAAACATCCTTCAAAACC
TCACAAATGTTGGGATGCCAGCTCCCACGGTTGGAGAACACTAACAATTC
GAATATAATAATGGACGGCCAGTATTTTAAAGAAGCTTGTTTATTCATTC
TTGATAAAGATCCTTCATTCTTTGGTAATCAATATGAAACATGGGCGAAA
TTAGAATGTAAACATGagtcaaCAGTATTCGTCTCAAAACCGCGACTGGT
TGAAAATGCGGACCACATTGATATTGGATTCTGTTCCTTTATTTACCACG
ATGACGTTGGATACCAGAACCCTGTTATTTTACGGAATGGTTTACCAATC
GTTCAGAATAGTAAAATCCAATTCCTAGATAAAGTTGGAATTCTTTCAGA
ATTTGAATTTAGTGCGTATACAGTGCAAAGTTATAACGATACTGGTTTGT
ATCAATGCCAAATTGAAATAGAG
Run BLAST on NCBI

protein sequence of TCONS_00062148-protein

>TCONS_00062148-protein ID=TCONS_00062148-protein|Name=TCONS_00062148-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
VNNTQGMLSERCPDMFGFYHHSNNTMLISNTLRSITILQLSSNGQTSFKT
SQMLGCQLPRLENTNNSNIIMDGQYFKEACLFILDKDPSFFGNQYETWAK
LECKHESTVFVSKPRLVENADHIDIGFCSFIYHDDVGYQNPVILRNGLPI
VQNSKIQFLDKVGILSEFEFSAYTVQSYNDTGLYQCQIEIE
Run BLAST on NCBI

transcript from alignment at scaffold_362:21910..23509+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062148 ID=TCONS_00062148|Name=TCONS_00062148|organism=Clytia hemisphaerica|type=transcript|length=1600bp|location=Sequence derived from alignment at scaffold_362:21910..23509+ (Clytia hemisphaerica)
GTGAATAACACTCAAGGAATGCTCAGTGAACGTAAGTGCTAAGTACAttg
ttgtcattttttctcgaaaatatcACAGCAGAGTATTTCCTACCAGGGAC
TTCGTCTCGTGTCGTGAGGTTTAAGAATTATAGTGAGTATGACAAATTAG
GATAACTTTGCTTAgggaaatcgtcatttttggtccaactcgtaggaatt
ggattgtgcttcatggtcaagcagagaaaattttaaaagtgagtctttcc
agcgagattttaagccaaaaagtcaaagtcaaataaaatacattttcaag
tcaaaagaactttcaaataaaaattaaacctttcaattttcaaatacgTA
AAATTTCCAACCGAATTTATGGAATTCCAAAATTCTATAACTATATTTTT
AACAATCTTTTCAGGATGTCCAGATATGTTTGGCTTCTACCACCATTCAA
ATAACACCATGTTAATCTCCAATACATTACGAAGTATCACCATCTTGCAA
CTCTCATCCAATGGCCAAACATCCTTCAAAACCTCACAAATGTTGGGATG
CCAGCTCCCACGGTTGGAGAACACTAACAATTCGAATATAATAATGGACG
GCCAGTATTTTAAAGAAGCTTGTTTATTCATTCTTGATAAAGATCCTTCA
TTCTTTGGTAATCAATATGAAACATGGGCGAAATTAGAATGTAAACATGG
TAAGttgcttttgtcttgtttatGTTCAACAGTTTTCTCTATATTTAAGT
CAGTTCGGGAGTGTGGTATACAAtaaaggaactaattttgaGGAGCAgct
aaaacatttttaaataatagAATTCGGAACGGGGAGGAACTTATTTTAGA
GAGGTAGTGTTTTTTAAATCTTGGCGAATGGCATGGTAAAGTGATTTATT
TTGACTAAAAGggagtacacattttttataagaacatccaaattttgtTA
AGCCTTcagatgatttttttaaattttttcaaaaatgatcttagcatgtt
cttatttactttttcttatttttgcccattttcctgattttctcgggtgt
tttagagtccgcaaagccttaagtGTTCTTAACTTACGAGACAGTAACCT
TCTTTAATTTTAGGCGAGAATTAATCTTACcgattttcgaataaaattgt
attttgcatGTTAGGACGAAAAGAGATTctttttttaagagttttaattt
ttgtggTAAATGCAAATAAAGATATAtgtcaatttttctcaaaaccaATT
TTATAGAGCTATACTGATTGAAGAAAGTTACTCTATGTCCTCTTCTTGTC
ACCAGGACTTTAAATTTAACTTTCaaatgttcttttgttttagagtcaaC
AGTATTCGTCTCAAAACCGCGACTGGTTGAAAATGCGGACCACATTGATA
TTGGATTCTGTTCCTTTATTTACCACGATGACGTTGGATACCAGAACCCT
GTTATTTTACGGAATGGTTTACCAATCGTTCAGAATAGTAAAATCCAATT
CCTAGATAAAGTTGGAATTCTTTCAGAATTTGAATTTAGTGCGTATACAG
TGCAAAGTTATAACGATACTGGTTTGTATCAATGCCAAATTGAAATAGAG

Coding sequence (CDS) from alignment at scaffold_362:21910..23509+

>TCONS_00062148 ID=TCONS_00062148|Name=TCONS_00062148|organism=Clytia hemisphaerica|type=CDS|length=1719bp|location=Sequence derived from alignment at scaffold_362:21910..23509+ (Clytia hemisphaerica)
GTGAATAACACTCAAGGAATGCTCAGTGAACGATGTCCAGATATGTTTGG
CTTCTACCACCATTCAAATAACACCATGTTAATCTCCAATACATTACGAA
GTATCACCATCTTGCAACTCTCATCCAATGGCCAAACATCCTTCAAAACC
TCACAAATGTTGGGATGCCAGCTCCCACGGTTGGAGAACACTAACAATTC
GAATATAATAATGGACGGCCAGTATTTTAAAGAAGCTTGTTTATTCATTC
TTGATAAAGATCCTTCATTCTTTGGTAATCAATATGAAACATGGGCGAAA
TTAGAATGTAAACATGagtcaaCAGTATTCGTCTCAAAACCGCGACTGGT
TGAAAATGCGGACCACATTGATATTGGATTCTGTTCCTTTATTTACCACG
ATGACGTTGGATACCAGAACCCTGTTATTTTACGGAATGGTTTACCAATC
GTTCAGAATAGTAAAATCCAATTCCTAGATAAAGTTGGAATTCTTTCAGA
ATTTGAATTTAGTGCGTATACAGTGCAAAGTTATAACGATACTGGTTTGT
ATCAATGCCAAATTGAAATAGAGGTGAATAACACTCAAGGAATGCTCAGT
GAACGATGTCCAGATATGTTTGGCTTCTACCACCATTCAAATAACACCAT
GTTAATCTCCAATACATTACGAAGTATCACCATCTTGCAACTCTCATCCA
ATGGCCAAACATCCTTCAAAACCTCACAAATGTTGGGATGCCAGCTCCCA
CGGTTGGAGAACACTAACAATTCGAATATAATAATGGACGGCCAGTATTT
TAAAGAAGCTTGTTTATTCATTCTTGATAAAGATCCTTCATTCTTTGGTA
ATCAATATGAAACATGGGCGAAATTAGAATGTAAACATGagtcaaCAGTA
TTCGTCTCAAAACCGCGACTGGTTGAAAATGCGGACCACATTGATATTGG
ATTCTGTTCCTTTATTTACCACGATGACGTTGGATACCAGAACCCTGTTA
TTTTACGGAATGGTTTACCAATCGTTCAGAATAGTAAAATCCAATTCCTA
GATAAAGTTGGAATTCTTTCAGAATTTGAATTTAGTGCGTATACAGTGCA
AAGTTATAACGATACTGGTTTGTATCAATGCCAAATTGAAATAGAGGTGA
ATAACACTCAAGGAATGCTCAGTGAACGATGTCCAGATATGTTTGGCTTC
TACCACCATTCAAATAACACCATGTTAATCTCCAATACATTACGAAGTAT
CACCATCTTGCAACTCTCATCCAATGGCCAAACATCCTTCAAAACCTCAC
AAATGTTGGGATGCCAGCTCCCACGGTTGGAGAACACTAACAATTCGAAT
ATAATAATGGACGGCCAGTATTTTAAAGAAGCTTGTTTATTCATTCTTGA
TAAAGATCCTTCATTCTTTGGTAATCAATATGAAACATGGGCGAAATTAG
AATGTAAACATGagtcaaCAGTATTCGTCTCAAAACCGCGACTGGTTGAA
AATGCGGACCACATTGATATTGGATTCTGTTCCTTTATTTACCACGATGA
CGTTGGATACCAGAACCCTGTTATTTTACGGAATGGTTTACCAATCGTTC
AGAATAGTAAAATCCAATTCCTAGATAAAGTTGGAATTCTTTCAGAATTT
GAATTTAGTGCGTATACAGTGCAAAGTTATAACGATACTGGTTTGTATCA
ATGCCAAATTGAAATAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038971XLOC_038971Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062148-proteinTCONS_00062148-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062148-exon-scaffold_362-1491911889:21910..21940TCONS_00062148-exon-scaffold_362-1491911889:21910..21940Clytia hemisphaericaexon
TCONS_00062148-exon-scaffold_362-1510915933:21910..21940TCONS_00062148-exon-scaffold_362-1510915933:21910..21940Clytia hemisphaericaexon
TCONS_00062148-exon-scaffold_362-1575043694:21910..21940TCONS_00062148-exon-scaffold_362-1575043694:21910..21940Clytia hemisphaericaexon
TCONS_00062148-exon-scaffold_362-1491911889:22324..22608TCONS_00062148-exon-scaffold_362-1491911889:22324..22608Clytia hemisphaericaexon
TCONS_00062148-exon-scaffold_362-1510915933:22324..22608TCONS_00062148-exon-scaffold_362-1510915933:22324..22608Clytia hemisphaericaexon
TCONS_00062148-exon-scaffold_362-1575043694:22324..22608TCONS_00062148-exon-scaffold_362-1575043694:22324..22608Clytia hemisphaericaexon
TCONS_00062148-exon-scaffold_362-1491911889:23253..23509TCONS_00062148-exon-scaffold_362-1491911889:23253..23509Clytia hemisphaericaexon
TCONS_00062148-exon-scaffold_362-1510915933:23253..23509TCONS_00062148-exon-scaffold_362-1510915933:23253..23509Clytia hemisphaericaexon
TCONS_00062148-exon-scaffold_362-1575043694:23253..23509TCONS_00062148-exon-scaffold_362-1575043694:23253..23509Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:21910..23509 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0974663	0.19009	0.110356	0.107966	1.31439	0.311594	0.877158	1.29043	0.164266	0.20347	0	0.194736	0.388931	0.673181	0.940858	0.534539	1.60969	0.974928	2.383	1.30103	0.659652	0.413685	0.447012	0	1.25574	1.4009	0.400937	0	0	0.220437
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062148 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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