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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062184 ID=TCONS_00062184|Name=TCONS_00062184|organism=Clytia hemisphaerica|type=transcript|length=2179bp
ataaaacttttttttatacatttttatacATTGTAATTCTTTACAACAAA
GGAATTATGCTTTAATCAGAAATTATTAGGGCTGAAATTACATGTCTTTA
atcaaagtaaaaatctttctccTCACAGGGAAGGAAGGATATAtctgtaa
attttgttttcgtTTCGAGTGATATTTTTCGGAgccgtttaaaaaaaaat
tgttaactTTATGTCTGTCCATTAATATAGATAGCAGTCTGTGTTTTATC
ctgttctttttgacttcacTCAAATCAagtttggtcttcaaaataacaaa
ttgaaaaagaaatcatgCTTTGGCACAAGAGTAATACGTCATTTGGAGTT
GAAAGTCTCCCAACCTTCTAGAGTTAAAACCTAAGTTAAGCTGCTTCAAA
AATAGACGAGCTTAACACAACAGAAATAACTTTAACAATTTTGTACATTT
GTTTTGTAGCTTCCATTTGGTTCGGTTGGGTTAGACTCCTTGCGATTGAA
AATCATTATTAAAAAGGTGTTTTTTCGATGGCTTTGGATTTTGGTCTAGG
ATGTCTCGGAGGTTTCGCGGGAACCTTAGTTGGCCATCCATTTGATACAG
TCAAGGTTCGACTGCAGAGCCAAGATAAGAATAACATCAAATACAAAGGA
ACATGGAATTGTTTCTCACAAATCATCAAGAAGGAATCTATGTTTGGCTT
GTACAAAGGCATGGTATCTCCTTTATACGGACAAATCGGCATCAACGCTA
TTGTATTTGGTATCCATGGCAACGTATTAAAAGGCCTTGGTAATCGAGAC
ATTAAATCACAATTTTTTGCTGGTGCTGTAGCAGGCGGAGTGCAAAGCGT
TATAGCATCCCCAATGGAGCTCGTTAAAATTCGTTTCCAGATGCAAGGAG
AAGGAGTACTTAAACACAACAAACTGACGGCAGCCGACCATAAATATTTC
TATGACTCTCCTACAGACTGTCTTAAGAAGATTTATAAACACGAGGGTGG
TGCTAAAGGACTTTTCCGTGGCATGAGTTTAACCTTAGTACGTTGCTTAA
ACTCGTTCGGAATTTATTTCGCATCTTATGATTTCTTATGTAAAAAGACG
NGCTTAAACTCTTTCGGAATTTATTTCGCATCTTATGATTTCTTATGTAA
AAAGACGGATGCGGTCACGGAAGAATGTGTTAACGTCTGGAAACTCCTGC
TCTGTGGAGGCACGGCTGGTAGTATTTGTTGGCTGATTGCCTACCCGACA
GATGTGATCAAGACACGGCAACAAATGGACGGCATGGGACGTACCAAATA
CAAAGGTGTCATTGACTGTACCTTGAAAAGCATACACGAGGAAGGCTATC
GTGTCTTGTTCCGTGGTCTGAACGCAACGCTTCTGCGAGCGTTCCCAACC
AACGCCGCCACTCTAGCTACGGTAACAGTGACGTCAAAAATGTTGGAAca
gaattgttgaaattgaaagtaGAAATAACGCGAAAGACTTGATTCACTTC
TAACCAATTAGACTTCTGAAGAAACATTTAGAGGGGACGTATGGAATATA
AATTAAAAACTCTTGAAAATGTCGAAAAGAATTACCGATTCATAATATAT
AATCATTACATAATATCATTGtattattggtcagcctaagctgagcattc
aaatccgtaaaattcatttcttccatcatcatcatcataagacggcaaaa
aaaaaatccgatttcccgatctccctttgatttttaaactttcttccgat
aaggttaactttttgggtacttttagcgtgcgttgtttttacagatcata
atgtggtgtttcaagatggcggctcaagcgataagtcagatgtgataagt
cagtgttgttccgatcgggttaactttttgggtacttttagcgtgcgttg
tttttacagatcatcaTGTGGTggatgtggtgtttcaagatggcggctca
agcgatacctaagtcagatgtgataagtcagtgttgttccgatcgggtta
actttttgggtacttttagcgtgcgttgtttttacagatcatcaTGTGGT
ggatgtggtgtttcaagatggcggctcaagcgatacctaagtcagatgtg
ataagtcagtgttgttccgatcgggttaactttttgggtacttttagcgt
gcgttgtttttacagatcataatgtggtg Run BLAST on NCBI transcript from alignment at scaffold_362:401442..406423+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062184 ID=TCONS_00062184|Name=TCONS_00062184|organism=Clytia hemisphaerica|type=transcript|length=4982bp|location=Sequence derived from alignment at scaffold_362:401442..406423+ (Clytia hemisphaerica)
ataaaacttttttttatacatttttatacATTGTAATTCTTTACAACAAA
GGAATTATGCTTTAATCAGAAATTATTAGGGCTGAAATTACATGTCTTTA
atcaaagtaaaaatctttctccTCACAGGGAAGGAAGGATATAtctgtaa
attttgttttcgtTTCGAGTGATATTTTTCGGAgccgtttaaaaaaaaat
tgttaactTTATGTCTGTCCATTAATATAGATAGCAGTCTGTGTTTTATC
ctgttctttttgacttcacTCAAATCAagtttggtcttcaaaataacaaa
ttgaaaaagaaatcatgCTTTGGCACAAGAGTAATACGTCATTTGGAGTT
GAAAGTCTCCCAACCTTCTAGAGTTAAAACCTAAGTTAAGCTGCTTCAAA
AATAGACGAGCTTAACACAACAGAAATAACTTTAACAATTTTGTACATTT
GTTTTGTAGCTTCCATTTGGTTCGGTTGGGTTAGACTCCTTGCGATTGAA
AATCATTATTAAAAAGGTGTTTTTTCGATGGCTTTGGATTTTGGTCTAGG
ATGTCTCGGAGGTAAGCTATTTGGCTGCTTGTTCATCACGTGAAAACGTT
TTCCAGTAGGCACAAAATGATGTTAAAGCAACATCCGTCTAAAGGTCTTT
CTCATGCAGGCTGGACCGTCGGGGCACATAGTCAAAATTGGGCAAAGGGA
CTTGCCAATGGCCAGGGTTCCTTTTATTAAGCTTTTTTTTTCAGGATGAA
agttggaaaatattttcaattttcgtctacttttagtcatttcttgCTAT
TTTTCAGGGTGAAACTAAATTGTGTAGCGACTGGTTAGAAATTTTAGAGT
AGACGAAACTTTTTGGCGCTATTAAAGAACCTCTCAGTCTTTAggtaata
gcgagtttatgtattcgagataaatagaggggggacggtataaagcagag
ttgacatgtctccaaaatcaccatCCActtttgctcgacgacggtaaaaa
caccaaaataccgtcgtctgtttaggtgagcaaaggcgatatagagccgt
acatcaagtatcgactttgttttgtatcgatttcagttaccgtcgccctc
gatatcctccgatacataaactcggtaattaAAAGAAGACTGGAGACAAC
TTATTTCTTCATCATTATTTATCATTGTAGGTTTCGCGGGAACCTTAGTT
GGCCATCCATTTGATACAGTCAAGGTATTTATGTCCATTAATTACTTAAT
TACcgatttttatgatattttacaATTcactttgtgttttttttttcact
cttcATATTTAATTTATTTACCATAGCCAGTTATAACGAAAAACAAGATC
AAAAGTATGAAACAAAGGAAGGTATAGAATCTTTCCAATATTCtcgatat
gcgtaagtcaagattaaaTCATTcttcctatcggaaacacccgaaaagac
cggaatttgacccctgtgttACTAATAACGCTCAAATTTCGGTGTTTTTG
GGTGCTGCTGATAGGAAAAATGATGTAATCTGGGCTAACGCATACCAAGA
GTTGTCAACCTATCAGCAAGATGGAGTGAAAAGAATAAGCCCGGACTTGc
tgaaggttttatttttacataagtgttcccgtttcatatcagacacatat
ttcatatcaggacagggtctgcctattgttatattatgctgatataaaca
aaaattgttttctttccctctttctgatcatctccacatccgtgtcaatc
caatgtgaaaaagcttgtaaattagaattgacgagtaagcaaacgatatc
actcttattcaaaaacaaaacctttaagtaaaatattttagcaatatatt
ttattgGATTCGACTCAGCCTCGACAGctcttttttgaaaactttagact
taaatgttactttattcaAATAACAGTATGAAGACTCGTGTTGCtgtaaa
attgttaaaattagATAGCAAAGAGCGATAGTTAGATTGAGTTGTGGTAA
GTTTTGAATAGTGGATCTCATTCAACCTGTATGTATCCTTTTTCTAACGA
TGACTTTCCCTTACAGAGACAATCAACACTCGAGACGACGCTCTGCTCCA
ATCCTCATTACTGTCTCAATTCAACTATCATCAACAGTTAGTTTCAAAAC
AAGCACTCATATAGTGTGCCTCCATCTAATAAAACCCTTCCATTTCAGCT
AATACCCCTTACaatatttcaaacaaatttatttgagaagtatttccaat
tttttcaaaactgatcTTAAAAACATAATTGCTAGATATTTTTGACCGTC
TAAGCAAACTTGAGTCTACAgaaagatttttgtcaaataaatCAAGCaac
acaaaaacattttcttaaaaaaataaatccacTGTCAATAACATTTAGTG
CCTTCGCCCTTATGcgttaatttcaaaaaaataagaaaggtGCCGCATCC
AATTCgcctactttcactttcgttttttaaCTTCAGGTTCGACTGCAGAG
CCAAGATAAGAATAACATCAAATACAAAGGAACATGGAATTGTTTCTCAC
AAATCATCAAGAAGGAATCTGTAAGTATCTCATCATTTGATACAAACGAA
AAGATTCCTCAAAGCCAGtattaattttaatttgattCAATAGTCTTATT
TTTGAccagaaaaagaattttggCAGCGCCCAAGAAACTGGCCAAGACTT
TTTATTTACTGTTACTGTATATATCTGCTACagtcagtctgtgccactac
ctcgatcgggaagattcttccgaaatgggaagaaccttcccgaacAGGAA
GAacttactttatttttttctgcccGTTTTGGAAGgattcttcctctttg
ggaagttgaaaattgactgaatctcggcgaagctgtacgatgaccggcga
aagttgaaactttttggaggtgaagaagcatcaaattttaaggtttttca
ccgaaagaaaagtagactttaccgtagaaatcttgttaaattgtAAAAAA
ACTGCGTAAACTTCCCAAACGAGAATTTCCAACCCGATCGAGTTTTCCTT
AGTTTCTCGCTTCTTCCCGATCTGGAAGTCCGTTAACCCGTTTGGGTGTT
ACgttaatttcccgttcgggaggattcttcccatttcggaagaatcttcc
aattttggaagaatcttcccgatcgagttagagGCACAGACTGACAGTAT
TTACATAATAAGACCTTGTGTCTACTATCACtttcttttctaaaaatcaG
ATACTTTCATTGATGAGCAGATCTGATTAATACCTTATTACTCGAATAGT
actgaattgaaaaatttcgtgttaattaaaaccccttgaattaaaaccag
ccgtggtgtccttgaaaaagcaataaaattcaTGTTAATTTTAAGGCCGT
TAAATACTTCCATACttatattcgtgtaataaggtatccCAGTTGACAAA
AACGTCATATGGGTCGGATATACTTCTTTTCATTTATTGCAGATGTTTGG
CTTGTACAAAGGCATGGTATCTCCTTTATACGGACAAATCGGCATCAACG
CTATTGTATTTGGTATCCATGGCAACGTATTAAAAGGCCTTGGTAATCGA
GACATTAAATCACAATTTTTTGCTGGTGCTGTAGCAGGCGGAGTGCAAAG
CGTTATAGCATCCCCAATGGAGCTCGTTAAAATTCGTTTCCAGATGCAAG
GAGAAGGAGTACTTAAACACAACAAACTGACGGCAGCCGACCATAAATAT
TTCTATGACTCTCCTACAGACTGTCTTAAGAAGATTTATAAACACGAGGG
TGGTGCTAAAGGACTTTTCCGTGGCATGAGTTTAACCTTAGTACGTTGCT
TAAACTCGTTCGGAATTTATTTCGCATCTTATGATTTCTTATGTAAAAAG
ACGNGCTTAAACTCTTTCGGAATTTATTTCGCATCTTATGATTTCTTATG
TAAAAAGACGGATGCGGTCACGGAAGAATGTGTTAACGTCTGGAAACTCC
TGCTCTGTGGAGGCACGGCTGGTAGTATTTGTTGGCTGATTGCCTACCCG
ACAGATGTGATCAAGACACGGCAACAAATGGACGGCATGGGACGTACCAA
ATACAAAGGTGTCATTGACTGTACCTTGAAAAGCATACACGAGGAAGGCT
ATCGTGTCTTGTTCCGTGGTCTGAACGCAACGCTTCTGCGAGCGTTCCCA
ACCAACGCCGCCACTCTAGCTACGGTAACAGTGACGTCAAAAATGTTGGA
AcagaattgttgaaattgaaagtaGAAATAACGCGAAAGACTTGATTCAC
TTCTAACCAATTAGACTTCTGAAGAAACATTTAGAGGGGACGTATGGAAT
ATAAATTAAAAACTCTTGAAAATGTCGAAAAGAATTACCGATTCATAATA
TATAATCATTACATAATATCATTGtattattggtcagcctaagctgagca
ttcaaatccgtaaaattcatttcttccatcatcatcatcataagacggca
aaaaaaaaatccgatttcccgatctccctttgatttttaaactttcttcc
gataaggttaactttttgggtacttttagcgtgcgttgtttttacagatc
ataatgtggtgtttcaagatggcggctcaagcgataagtcagatgtgata
agtcagtgttgttccgatcgggttaactttttgggtacttttagcgtgcg
ttgtttttacagatcatcaTGTGGTggatgtggtgtttcaagatggcggc
tcaagcgatacctaagtcagatgtgataagtcagtgttgttccgatcggg
ttaactttttgggtacttttagcgtgcgttgtttttacagatcatcaTGT
GGTggatgtggtgtttcaagatggcggctcaagcgatacctaagtcagat
gtgataagtcagtgttgttccgatcgggttaactttttgggtacttttag
cgtgcgttgtttttacagatcataatgtggtg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062184-exon-scaffold_362-1491911889:401442..402002 | TCONS_00062184-exon-scaffold_362-1491911889:401442..402002 | Clytia hemisphaerica | exon |
| TCONS_00062184-exon-scaffold_362-1510915933:401442..402002 | TCONS_00062184-exon-scaffold_362-1510915933:401442..402002 | Clytia hemisphaerica | exon |
| TCONS_00062184-exon-scaffold_362-1575043694:401442..402002 | TCONS_00062184-exon-scaffold_362-1575043694:401442..402002 | Clytia hemisphaerica | exon |
| TCONS_00062184-exon-scaffold_362-1491911889:402622..402665 | TCONS_00062184-exon-scaffold_362-1491911889:402622..402665 | Clytia hemisphaerica | exon |
| TCONS_00062184-exon-scaffold_362-1510915933:402622..402665 | TCONS_00062184-exon-scaffold_362-1510915933:402622..402665 | Clytia hemisphaerica | exon |
| TCONS_00062184-exon-scaffold_362-1575043694:402622..402665 | TCONS_00062184-exon-scaffold_362-1575043694:402622..402665 | Clytia hemisphaerica | exon |
| TCONS_00062184-exon-scaffold_362-1491911889:403928..404011 | TCONS_00062184-exon-scaffold_362-1491911889:403928..404011 | Clytia hemisphaerica | exon |
| TCONS_00062184-exon-scaffold_362-1510915933:403928..404011 | TCONS_00062184-exon-scaffold_362-1510915933:403928..404011 | Clytia hemisphaerica | exon |
| TCONS_00062184-exon-scaffold_362-1575043694:403928..404011 | TCONS_00062184-exon-scaffold_362-1575043694:403928..404011 | Clytia hemisphaerica | exon |
| TCONS_00062184-exon-scaffold_362-1491911889:404934..406423 | TCONS_00062184-exon-scaffold_362-1491911889:404934..406423 | Clytia hemisphaerica | exon |
| TCONS_00062184-exon-scaffold_362-1510915933:404934..406423 | TCONS_00062184-exon-scaffold_362-1510915933:404934..406423 | Clytia hemisphaerica | exon |
| TCONS_00062184-exon-scaffold_362-1575043694:404934..406423 | TCONS_00062184-exon-scaffold_362-1575043694:404934..406423 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:401442..406423 + |
Blast
BLAST of TCONS_00062184 vs. Swiss-Prot (Human)
Match: MCATL (Mitochondrial basic amino acids transporter OS=Homo sapiens GN=SLC25A29 PE=1 SV=2) HSP 1 Score: 258.84 bits (660), Expect = 3.487e-79 Identity = 141/291 (48.45%), Postives = 176/291 (60.48%), Query Frame = 3
Query: 528 MALDFGLGCLGGFAGTLVGHPFDTVKVRLQSQDKNNIKYKGTWNCFSQIIKKESMFGLYKGMVSPLYGQIGINAIVFGIHGNVLKGLGNRDIKSQFFAGAVAGGVQSVIASPMELVKIRFQMQGEGVLKHNKLTAADHKYFYDSPTDCLKKIYKHEGGAKGLFRGMSLTLVRCLNSFGIYFASYDFLCKKTXLNSFGIYFASYDFLCKKTDAVTEECVNVWKLLLCGGTAGSICWLIAYPTDVIKTRQQMDGM-GRTKYKGVIDCTLKSIHEEGYRVLFRGLNATLLRAFP 1397
MALDF GC GG AG LVGHPFDTVKVRLQ Q +Y+GT +CF IIK+ES+ GLYKG+ SPL G INA+VFG+ GN L+ LG+ +QF AGA AG +Q VI PMEL K R Q+Q G + Y DCL +IY HE G +G+ RGM TL+R SFG+YF +YD L + C+ D + V KLLL GGT+G + WL YP DV+K+R Q DG+ G +Y+G++DC +S EG+RV RGL +TLLRAFP
Sbjct: 1 MALDFLAGCAGGVAGVLVGHPFDTVKVRLQVQSVEKPQYRGTLHCFKSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGHDSPLNQFLAGAAAGAIQCVICCPMELAKTRLQLQDAGPART-----------YKGSLDCLAQIYGHE-GLRGVNRGMVSTLLRETPSFGVYFLTYDALTRALG--------------CEPGDRLL-----VPKLLLAGGTSGIVSWLSTYPVDVVKSRLQADGLRGAPRYRGILDCVHQSYRAEGWRVFTRGLASTLLRAFP 260
The following BLAST results are available for this feature:
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