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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062195 ID=TCONS_00062195|Name=TCONS_00062195|organism=Clytia hemisphaerica|type=transcript|length=1173bpRun BLAST on NCBI protein sequence of TCONS_00062195-protein >TCONS_00062195-protein ID=TCONS_00062195-protein|Name=TCONS_00062195-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp RITTCGNLENGGIEFCVAEKTKRKLKMESKATFDEFAHALKQEIDAIQCKRun BLAST on NCBI transcript from alignment at scaffold_362:633119..660479+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062195 ID=TCONS_00062195|Name=TCONS_00062195|organism=Clytia hemisphaerica|type=transcript|length=27361bp|location=Sequence derived from alignment at scaffold_362:633119..660479+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_362:633119..660479+ >TCONS_00062195 ID=TCONS_00062195|Name=TCONS_00062195|organism=Clytia hemisphaerica|type=CDS|length=14196bp|location=Sequence derived from alignment at scaffold_362:633119..660479+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00062195 vs. Swiss-Prot (Human)
Match: CCDB1 (Cyclin-D1-binding protein 1 OS=Homo sapiens GN=CCNDBP1 PE=1 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 1.279e-25 Identity = 84/321 (26.17%), Postives = 154/321 (47.98%), Query Frame = 2
Query: 179 EDYNKQTHWQKMDLCCELIAKECTKMALAFSKPPYPPKEDSMLLLRDVSKSVDMLLAWYKCFPLDEGQLLHDVLEKCVLSVLTSVASFTD----STLNMRKSDSMISTGSVWEHCKQFKSLPDDNIKVALSGINSSYSLITDAIEEIHQTIRXXXXXXXXXXXXXXXXXXFNEK--------------WTEDDKNLMKPVLGLLMASKCLLKKIKSALNKIQVGKNSNIPSTIGSMNKEIDRLVLDHIQHISPSVDDLVMVIYPPLQRKDLHNFXXXXXXXXXXXXEFLRNSSLGTDADNQTWIDFIHKAVDHNLEKLNQL 1087
E++N++ W++++ +++E T + + FS+ P P +++ V ++ +A Y P D+G L ++ L ++ +A + + +++ +IS SVW C+Q +P DN AL + + + DA EE+ Q + + D D ++ D + W+EDD+ L+ P L L+ ASK LKKI+ + + GK + ++D +V D ISPSVDDL + IYPP+ + + KL +LKK LE + S + ++ +WI + A+DH + ++ +L
Sbjct: 45 EEFNREMFWRRLNEAAVTVSREATTLTIVFSQLPLPSPQETQKFCEQVHAAIKAFIAVYYLLPKDQGITLRKLVRGATLDIVDGMAQLMEVLSVTPTQSPENNDLISYNSVWVACQQMPQIPRDNKAAALLMLTKNVDFVKDAHEEMEQAVEECDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDDQELIIPCLALVRASKACLKKIRMLV--AENGKKDQV--------AQLDDIV-DISDEISPSVDDLALSIYPPMCHLTVRINSAKLVSVLKKALEITKASHVTPQPED-SWIPLLINAIDHCMNRIKEL 353 The following BLAST results are available for this feature:
BLAST of TCONS_00062195 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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