TCONS_00062237 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062237
Unique NameTCONS_00062237
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1359

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062237 ID=TCONS_00062237|Name=TCONS_00062237|organism=Clytia hemisphaerica|type=transcript|length=1359bp
caaaaacaaaaaaaagaaacaaatacAATGGCAAGTAGCAGTGGTGAAGA
AACTTCATTGAACCTGAATATCAAAGATGGTACAAGGAATTACTCAAAGA
GCACAGACAGTGGATCGGATCCAGACGACAGCAACAATAACAATACAATA
ATCACACAACAATCTGAACAAACCAAGAATACCAAACCACAAGGACAAAT
TCGCGCTGGTCTACGTTCATTATACCTTGATAAACCAGTCCGTGTGAAGT
TCGTCAACCACTCGGGAAAAGAGGTTCAGTTATATTGGATCAACTTTGTC
GGtgaatgtgaaaaagctttcaaaattttagatgGTAAATCTGAAGTCGT
TGACACATTCGAAACTCATCCTTGGATTGCAGCAAATGCCAGAAATAAGA
AGGTCTCACACGCCTTTACCATCGGAAATAATTTGGTTTATTACCCTTTG
ATGGGACCGAATGGAGGCAAATATGCAGTCGCTGAAATTCGAAAAGCACC
AGAAAAACTAGCAGATTTAATATCGCGACCAAATGGTACAGAAGTCTTGG
TAAAATTTATAAACAGAACGTCGAGACCAGCTTATCTTGAAATGGTCAAT
CCAGAAGGCGATAGAGAATTGAAACACACGTTAGAAGCAGGACAAAGTTG
GACGACGTGTACACAAGAAAAGACGTTCTGGATCACCACTATGGATCAAG
AAACGGACGAAGGACTCTTACTGAACTACGGATGGTATTATTCACCTGTC
AAAACCAGAATGAAGAAAGAACGGTGCTATATCACTGATTATATATAAGG
AGTGGGCCAGCAGCGAAGAGACGTAGATACTAACAACAACACAGCACATA
CGTAAAATTTATCCATTGAGAATAGCAAAAGAGAGAGGATGGAGAGAGAA
CTTGTGTCTAACAAAAAGATGAAACTCCTCACAGCAAGGTCAACAACCAT
GATGAATGGATACTTTGTATAGCTGGAGTGAAAATTCACCagaaaaaagc
ttcaaaatagTTAGAAACATCTAAAGGAAAAACTATTAAGTGACATCACG
AGCATCCAAAAACAAAGCTCATGGTTCAATAGTCAAAATActaataaatt
ttgaaagtcaacaaaatccaaatttttattataaaaccGTAATATTATTT
AAAAGATATCAAATATTATACGTAACGATTTTCTGCAGGTTTTATCAGGA
AACTGTGTTACGATATTTATTTAAAACATCGTTACTACAATACTTTTTGG
AAGCAATCatcattttgtaaattttttctatatttttttgatagttgctt
ttcttaaaaaaaaaagaaaaatttgtatttttctttcctATTAAGAATCG
GGAAATAAA
Run BLAST on NCBI

transcript from alignment at scaffold_362:244122..251178-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062237 ID=TCONS_00062237|Name=TCONS_00062237|organism=Clytia hemisphaerica|type=transcript|length=7057bp|location=Sequence derived from alignment at scaffold_362:244122..251178- (Clytia hemisphaerica)
CAAAAACAAAAAAAAGAAACAAATACAATGGCAAGTAGCAGTGGTGAAGA AGTAAGTTAAAAAATGAACCAAATTGAGGCCCTTCTGGTCCCAAAACGTT AAAACAACATTCATCTGACATTTATAACGTCCATATATTGTTAGCCCTTT CCGTGCCGATGTCGTATATATCCGACATGCAAATTTTCACTCTACTTGCC AATGTCGGATATATCCGACATCAAATTTTTTTACCTAATTGNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNCATGTCGTATATATACGACATCGGCAAATCAGGTTACTAAAAAAAA TTACCCCTCGGCAAATGGATTGGGGTACAAAAACAAGGTAACGGCACGCA AAGGGTTAGATAGACGTTACAACGATGTTTGAGAGCTGGGGTGTAGTCTC AAAACAGATCATCCATTCTGCTCACACTATTCCGCTCTGCTCCGTGGCGA ATACGATGATCTGACCTGGCTGTTCAGCCAAAACTATCAAACTGCTTTGT CTTTTGCTAAAAAACGAGACCGAAAGCAACTTGGTTCTAATGTTTTTGTA TATGATTTACGTTTGGTGCGATTATTTTGCTTTAGGCAATCACCGCGCGC AAAAAAATCATTTAATATTCATCTCAAATCTGTATGAAAAAGATCAAAGC GGTACGCCAACCTAGGCCGATTCTCATATGGATTCATAGCCTTTAGATTG AATATGTTCCATGCACAGAGTATCAGAATCTGCTCGCGAATTATCTTGGT TGGTTTAGTTGCATTTCGAATCAGCCATGGAGAGCCTTTATTTGACTTTT AAACAGTTTTTTAGACTCGTTACACTCTTCTTTTTAGACTTCATTGAACC TGAATATCAAAGATGGTACAAGGAATTACTCAAAGGTAAGACGGCTTAAT TATTTCCGGGTTTGTTAAATACAACCGTAGCCAATAGTTCACCTTAAAAT GGGGTACTGTAAGGGAAGGTAAAGTTATTGAGAAGCTCAAAGTCTTACTC CAGTTGACTAAGTTCAATTTGTTCGAATTACAGAGAGATTCTAATTATAG AGAGTATTTTAGGGTTTCCCGTTGATTGGAATCATAGAAAGTTCGAATAC ATTTTTTATAAGAACATCCAAAATTTTTCAAGCCTTTAGATGTTCTTACC ATGTTCTTATTTTCACCATTTTGGGAGTATTTTTGTCAATTTTCTTAAAA AATCAGCCATCAAAATGTCCTTAACTTGTTCTTAACATTTTGCCCATCGA AGCCTCTTGTTCTTATATAGTTTGTTCTTATACAAAAACGTGTAATAGAG TCCACTGTAGGCATCGTTTTCGGACGTTCCGATGCGACAATGATTGACGT CACAGAAGCTCGTAAAGAGTAAGGAAATCTTTAAAAAACGTGGCCGTAAT CTGAAAACGAGGAGAAGCGATTTAGATTTTCTCAGCTCCCGTCTCACAAA AAAAAAAGTTTATGTCCGATTATTACAAAAATGACAGGCGCTTTTAATTG ACAGCTCTCATTAAAACTAATTATAAAAAAAAGTCATTTTCAACAATGAA GCATTACTTAATTGTATGCTTGTTCGTCTTTTTTTGTTATGAAGAAGTAT TACTTTTATTCATTTGTTGCTGTTTTCTTTGAATGTTATTAAGAAAAGTT TTCTCCTTTGAAGATTTCACATTGTATTTCTTACTTAATTGGTTAGCTTC ATTAAGCTTCTAAAGTACAGTGAAAATAATAAACAATTTGATGCGAATTC TTTTGATATTATATTGGTATTGAGTGGCAGAGAAAAATGTTATGATGGGA AAGTAATTTTGAAAGACTTTGAAAACATTAATCAAAAAGAAAAGAATTGG TACAAAATTGGTACAAAAAACAGAGAGCACAACCTTTGTTTAAAATCATA AAATAAAATTTTTTCGCCATCATCAGTGATATTGGTGTTAGGACCAAAAT TTGTATTTGGACCAAATTATGTTTGGATCGTTTCAAAAAACGAGCAGTGT TGAAAGTCTACAAAAGATGATTCTACGCGAGGAAAAACAACGAAAAACGA ATGCTGAAAGACCGAATAAACTTAACATCAGATCAAAGGTAGATCCTTGA TACTTGTAAAAACATCTTAAATTATATAAGAACAGCAAGGCTTAAAAACG CCAAAAAAATAAGGATAATATTGGGAGCAAACCTTAGCCTAAAAAGGCTG AAATTTAGGCAAATTAAGAGACAAATTAGTAAAAATTCGGTATTCATATC AATTAATCTTGCTCTGGAACTATAAATGGCCGAATCTCAACTCTTCTAAT GCGAACCTATATTCTATTAACACTCTCTGTTCTCGAACTAAAATAAAATT CTTTCTTTAATTCCAATCTTACTTTGGTTCGAAAAACAATTCTTGGCTCC TTGAAGATGGAATTAGAGATGGAGAGATAGAGAATAAACTATAATTTCAA GGAGGAACCGCCAGCCCTGGTTTAAAATAACTGTTTGACCAGCTTCTATC TTTTTCTTACAGAGCACAGACAGTGGATCGGATCCAGACGACAGCAACAA TAACAATACAATAATCACACAACAATCTGAACAAACCAAGAATACCAAAC CACAAGGACAAAGTAAGGAGAAATTTTTTTACATGGTTTCGGCCCATTTT TAGTTGCCAAACGATTTAGGTCCCCCTTGAGTTAATGACTTTCGGGGTAG CTTGGGAAAACAGTTACAAACAGTTTCGTAGCCGCAGTCAAGAGCCTTGA CTAAAACAATTAGGTAGTACCCCATGAACAAGACAACCCTAAAAAATTGC AAACTTTTGGTAGCCCCGAGCCCCATACCTGGTTCCCTTTACAATGGAGT TTATTAATCTAGACTAGTTTTGATTTTGAGTATTTTCTACCTGTTGCGGA GTAAAAAGGTGAAATATAATGTAAGCTCACCGTTACACTTTGTAATTGAG ACCGCCGCTTCCAGGAGATTGATTTTCTTGGAAACCTGTAAAAAAATTAA AAAGTTGAAAACCAGTTCATTACTATTAATTTCCCTTTTAGTTCGCGCTG GTCTACGTTCATTATACCTTGATAAACCAGTCCGTGTGAAGTTCGTCAAC CACTCGGGAAAAGAGGTAAGCGAGTCATATTTTTGTTGCCACCTTCAAAA TTGGAATGTGCATCTGAATATTTTTTTAAGCCCACAGCAATTTTCACAGC TTTAGCCTAATCTCAAAACAAAACACCTTCTTTTCCAGACCAAAATCTCT ACCGTTTTGAGCCATAGTCCGGCTTCAACTGTTTAAAGAAGATTGCCGGT GAGGGGTCCATTTCAGACTTAGTTTTAGAGTTTGGCAATCACAACTAGGC TTACCAGACAGCTCTGTAAAATATCACCTACGAAGATATAGCTCTGCAAG GTTAACAACCTCACCTAACTTTACTTTTCTTCAAAAAAAAAAATGAAAAG ACAAAATAATACAAACTGTCAGAAAATGTGTTGGTTTGAATTTGAAATGG CTGGTGGTCATCGAATGGTTCTAATATTGTTTTGAATTCCCGCTGTTAAC GCCTGTAAAAATAAAAATGATGGAATAATTACACGCTTTATACACAACGC GTGCATACTATACGGGAATTAAAATTGTCCAGATTTCTAGCCTATACTTA AACAAATCCCCCTAAATCCCCCCGAAAAGAGTTCCGCGTAGGGATAGGAC ACGTCACTTCGCTAAAGCAGGCTAAAGTAGTGTCTTGGGCTACAAATTTA CTTTATCTCTTATCTCACATCTTGGTTCTTATTTATTCATTGTTTTCAGG TTCAGTTATATTGGATCAACTTTGTCGGTGAATGTGAAAAAGCTTTCAAA ATTTTAGATGGTAAATCTGAAGTCGTTGACACATTCGAAACTCATCCTTG GATTGCAGCAAATGCCAGAAATAAGAAGGTCTCACACGCCTTTACCATCG GAAATAATTTGGTTTATTACCCTTTGATGGGACCGAATGGAGGCAAATAT GCAGTCGCTGAAATTCGAAAAGCACCAGGTAGATTTTATCTCCCACCACT GATTTTGTTATTTTCACTTACTGAAATATTGAAAAAAAAAAAAATTTTGG TCATTGTTCCGTTTTACTGAAAAAATTAAGATACATGGAAATTGAAACTT AAAACAGCTAGTAACCTACAAACAATTAAAATGAGTAAATCCCTCAGGTG TGGAAAGTACATTTGACACGTCCTTGGACCATGAACTATTTTTCCTGTGC TAAGAGTACTATTTTTCCTGTGCTAAGAGTACAATTTTTAACGGATTGGA ATTATATTGCAATGTACGATAGTTTCACCCTAACTGAAGAAATAATTAAA AAAGAAAAAGTCGCCTGATTGAAGAATTCCAGTTCAGTGAAATTAGATAA CCTTTTTCTTGTTTAGAAAAACTAGCAGATTTAATATCGCGACCAAATGG TACAGAAGTCTTGGTAAAATTTATAAACAGAACGTCGAGACCAGCTTATC TTGAAATGGTCAATCCAGAAGGTATTTATAATGACTATATACTTGCATTG ACTTAGTAGACCTTGAAAAACTATGCACTTAGTAACCTCCGATTGAATTA CGTTAGATAACATGGCTATTGCTAGAAATTTCGAAGGCTTGAGTCTTGAA ACTTATGTATATGGGCTTTCCCAGAAAAAAACCGTACACCCCCTGTTGAG GAGGTAAATTTCCGTTCCTAGGGGGTAAAGTTTGAAATGTTGAGGAATTC CATAGGGTTTACAAAAATCCATTAAAAATAAGCGGAATTCCATGGGGTAT TGTTTGAAAACCCACAAAAATTTGGAACTCCAAAGGGTTTTGACCCTTAA GTTTCTTGGAATTCCAGGGGTAGCTCATACAAAAGGTTTGACCTCCTCAA CAGGGGGTGTACGTTTTTTTTCTTGAAAAGCCCTGTGGTTTAAGAAGAAA TTTTTCTAGACCTTTATTTTTAAAATTGATTAGGCTCAGACTCCGGTTGT GTTCTTGTTTTAAATTGTTCTTATAAAAAAGCGTTACCACAAAAATAGGA ACTTTTTTTAAATTAAGACCTTTAAAGTGCTTAAACATGCTTTATAAGGA TAGCACCTTATAATCAACGATATCTTCTTTTTGACTAGGCGATAGAGAAT TGAAACACACGTTAGAAGCAGGACAAAGTTGGACGACGTGTACACAAGAA AAGACGTTCTGGATCACCACTATGGATCAAGAAACGGACGAAGGACTCTT ACTGAACTACGGATGGTATTATTCACCTGTCAAAACCAGAATGAAGAAAG AACGGTGCTATATCACTGATTGTAAGCTCCTCTCTAAGAACGCCCAAAAA TTTTGAAGCCTTTAGATGCTCTTAACTTTTTGAGTTTTAAGCCTAAAAAT GTTCTTAACATGTTCTTATTTTCTCCATTTTTTGAGCATTTTTGCCCATT TTTCTAAGAAACGGCTGTTTTAGTGTCAGCAAAGCCTTAAAATGTCCTTA ACTTATTCTTAACATTTCGGCCATCGAAGCCTCAAATGTTCTTAAATGTT CCTATAAAGAAACTTTTTCATTGGAGAATGAGCAGAAGCCTCGGACGCCC TTTAATCCAAACCCGGTCAGGTATGGAAGCCTGGAAGGTTCATCATGTTA GCTCCTTCTAAAACAATACATTATCAGTTAACTCTGTTTTATCTCGAAAT ATTTACTTGGATCTTCTGACCTTATCTGAAAACTTGGCAGTTTTTGGGAA CGCGACAAAAATCCCAACAGTTTTGACGATACCTCCAGTTTTGGAAGAAC TCGCATGATGACACTTCTTGGCTTATATACAAAAAGATGAAAGATGTCTC CTTTAAATGAAAAGAGATTTCATTGCCCAGGTTATCGTCTAGTGTTTATC TCAGTAGGGAGGGAAACCTACGTGCTTGTGACGCTTATGACTATACGCAA CACAATCAAAACTGGTTTCTTTTTTATCTTTAGGTTATATTTCTTTCCAT AAAAACCCAAAAAGTATACGAAAGACCTTTAGCCGATCATTACAGCGCTT GAAACATTGTTTTCAAATAAGTTGTATTTCTTTTACAGATATATAAGGAG TGGGCCAGCAGCGAAGAGACGTAGATACTAACAACAACACAGCACATACG TAAAATTTATCCATTGAGAATAGCAAAAGAGAGAGGATGGAGAGAGAACT TGTGTCTAACAAAAAGATGAAACTCCTCACAGCAAGGTCAACAACCATGA TGAATGGATACTTTGTATAGCTGGAGTGAAAATTCACCAGAAAAAAGCTT CAAAATAGTTAGAAACATCTAAAGGAAAAACTATTAAGTGACATCACGAG CATCCAAAAACAAAGCTCATGGTTCAATAGTCAAAATACTAATAAATTTT GAAAGTCAACAAAATCCAAATTTTTATTATAAAACCGTAATATTATTTAA AAGATATCAAATATTATACGTAACGATTTTCTGCAGGTTTTATCAGGAAA CTGTGTTACGATATTTATTTAAAACATCGTTACTACAATACTTTTTGGAA GCAATCATCATTTTGTAAATTTTTTCTATATTTTTTTGATAGTTGCTTTT CTTAAAAAAAAAAGAAAAATTTGTATTTTTCTTTCCTATTAAGAATCGGG AAATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039011XLOC_039011Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062237-exon-scaffold_362-1575043694:251128..251178TCONS_00062237-exon-scaffold_362-1575043694:251128..251178Clytia hemisphaericaexon
TCONS_00062237-exon-scaffold_362-1575043694:249894..249941TCONS_00062237-exon-scaffold_362-1575043694:249894..249941Clytia hemisphaericaexon
TCONS_00062237-exon-scaffold_362-1575043694:248167..248266TCONS_00062237-exon-scaffold_362-1575043694:248167..248266Clytia hemisphaericaexon
TCONS_00062237-exon-scaffold_362-1575043694:247664..247737TCONS_00062237-exon-scaffold_362-1575043694:247664..247737Clytia hemisphaericaexon
TCONS_00062237-exon-scaffold_362-1575043694:246751..246979TCONS_00062237-exon-scaffold_362-1575043694:246751..246979Clytia hemisphaericaexon
TCONS_00062237-exon-scaffold_362-1575043694:246258..246362TCONS_00062237-exon-scaffold_362-1575043694:246258..246362Clytia hemisphaericaexon
TCONS_00062237-exon-scaffold_362-1575043694:245458..245640TCONS_00062237-exon-scaffold_362-1575043694:245458..245640Clytia hemisphaericaexon
TCONS_00062237-exon-scaffold_362-1575043694:244122..244690TCONS_00062237-exon-scaffold_362-1575043694:244122..244690Clytia hemisphaericaexon
TCONS_00062237-exon-scaffold_362-1510915933:251128..251178TCONS_00062237-exon-scaffold_362-1510915933:251128..251178Clytia hemisphaericaexon
TCONS_00062237-exon-scaffold_362-1510915933:249894..249941TCONS_00062237-exon-scaffold_362-1510915933:249894..249941Clytia hemisphaericaexon
TCONS_00062237-exon-scaffold_362-1510915933:248167..248266TCONS_00062237-exon-scaffold_362-1510915933:248167..248266Clytia hemisphaericaexon
TCONS_00062237-exon-scaffold_362-1510915933:247664..247737TCONS_00062237-exon-scaffold_362-1510915933:247664..247737Clytia hemisphaericaexon
TCONS_00062237-exon-scaffold_362-1510915933:246751..246979TCONS_00062237-exon-scaffold_362-1510915933:246751..246979Clytia hemisphaericaexon
TCONS_00062237-exon-scaffold_362-1510915933:246258..246362TCONS_00062237-exon-scaffold_362-1510915933:246258..246362Clytia hemisphaericaexon
TCONS_00062237-exon-scaffold_362-1510915933:245458..245640TCONS_00062237-exon-scaffold_362-1510915933:245458..245640Clytia hemisphaericaexon
TCONS_00062237-exon-scaffold_362-1510915933:244122..244690TCONS_00062237-exon-scaffold_362-1510915933:244122..244690Clytia hemisphaericaexon
TCONS_00062237-exon-scaffold_362-1491911889:251128..251178TCONS_00062237-exon-scaffold_362-1491911889:251128..251178Clytia hemisphaericaexon
TCONS_00062237-exon-scaffold_362-1491911889:249894..249941TCONS_00062237-exon-scaffold_362-1491911889:249894..249941Clytia hemisphaericaexon
TCONS_00062237-exon-scaffold_362-1491911889:248167..248266TCONS_00062237-exon-scaffold_362-1491911889:248167..248266Clytia hemisphaericaexon
TCONS_00062237-exon-scaffold_362-1491911889:247664..247737TCONS_00062237-exon-scaffold_362-1491911889:247664..247737Clytia hemisphaericaexon
TCONS_00062237-exon-scaffold_362-1491911889:246751..246979TCONS_00062237-exon-scaffold_362-1491911889:246751..246979Clytia hemisphaericaexon
TCONS_00062237-exon-scaffold_362-1491911889:246258..246362TCONS_00062237-exon-scaffold_362-1491911889:246258..246362Clytia hemisphaericaexon
TCONS_00062237-exon-scaffold_362-1491911889:245458..245640TCONS_00062237-exon-scaffold_362-1491911889:245458..245640Clytia hemisphaericaexon
TCONS_00062237-exon-scaffold_362-1491911889:244122..244690TCONS_00062237-exon-scaffold_362-1491911889:244122..244690Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:244122..251178 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.139187 0.0541555 0 0.0919357 1.85234e-08 1.05141 0 0 0.000371056 4.95453 3.99373 1.40794 5.14927 10.4695 0 0.348761 0.454965 0.937219 20.7047 26.1383 1.12383 0.745841 1.76565 2.46529 0 0.365717 3.37491 0.00462063 0 0.0507357
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062237 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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