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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062241 ID=TCONS_00062241|Name=TCONS_00062241|organism=Clytia hemisphaerica|type=transcript|length=4554bpRun BLAST on NCBI transcript from alignment at scaffold_362:267136..280940- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062241 ID=TCONS_00062241|Name=TCONS_00062241|organism=Clytia hemisphaerica|type=transcript|length=13805bp|location=Sequence derived from alignment at scaffold_362:267136..280940- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00062241 vs. Swiss-Prot (Human)
Match: PK1L2 (Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4) HSP 1 Score: 196.823 bits (499), Expect = 2.418e-50 Identity = 128/374 (34.22%), Postives = 214/374 (57.22%), Query Frame = 3
Query: 372 MVPNDPVYTEASLNYTFDITK--AKCLFWNETTETFGSDGCWVGSLTTPERTQCLCTHLTDFGGDVMVAPNPIDMGAVFEGLKNLGDNLGVLMVILTIFLVYILLCVWSXXXXXXXXXXXXLVTVDCTSGDESQQSLLLNIITGAGDGSGTTARVSCEIMGSKGKTGIIPLTYQDKSLFKTRSAVAIKVLLSQDIGDLETIRVFHDNSGKSPHWYLRSILITDIQTKKEYPFIYDSWLGVAETQNPTIDTTLKLADEKDMKKFHLVFATKISQGLLDGHIWFSIFLRPKRSSFTRVRRLSACLALLFLTMLTNAMFFGVGDNPANRKIVWLGEFKINFTGIMIGXXXXXXXXXXXXXXXXXFRRVAPKKEKKDK 1487
+VP + + T IT + C+FW+E ET+ GC VG T+P +T CLC HLT FG +V N I++ E DN V+ + + +VY+L+ +W+R+KD +D + VTV + +Q L+ + TG G+ T+++V+ + G G+ L D +F+ + A + +G+L ++R++HDNSG P WY+ +L+ D+ +++ F+ +SWL + + +D +A E+D K+F +F K S G DGHIW+SIF R RSSFTRV+R+S C +LL TMLT+ MF+GV +PA +K+ LG+ + + +MIG++SS+++ +++I++IF+ P+ K+
Sbjct: 1257 VVPESDLEPAPGRDLTVGITTFLSHCVFWDEVQETWDDSGCQVGPRTSPYQTHCLCNHLTFFGSTFLVMSNAINIHQTAELFATFEDNPVVVTTVGCLCVVYVLVVIWARRKDAQDQAKVK-VTVLEDNDPFAQYHYLVTVYTGHRRGAATSSKVTVTLYGLDGEREPHHLADPDTPVFERGAVDAFLLSTLFPLGELRSLRLWHDNSGDRPSWYVSRVLVYDLVMDRKWYFLCNSWLSI-NVGDCVLDKVFPVATEQDRKQFSHLFFMKTSAGFQDGHIWYSIFSRCARSSFTRVQRVSCCFSLLLCTMLTSIMFWGVPKDPAEQKMD-LGKIEFTWQEVMIGLESSILMFPINLLIVQIFQNTRPRVAKEQN 1627 HSP 2 Score: 127.872 bits (320), Expect = 2.721e-29 Identity = 97/353 (27.48%), Postives = 179/353 (50.71%), Query Frame = 3
Query: 2787 WEFFSSSELRGFXXXXXXXXXXXXXXVANLGYNEETSWTVLADLHSKNWFDKQTRAAFVEFTVYNANVNLFLTAFLYTETLPTGGAFPWADFKVFNGYRYSAKEGLQSLWAELVFICFITFFAIREIRKMIRFKKAYFTSFFNWIEVVLMPLYLIMFGLIVIRWLTTAENIKSFKHNPKDFVSFQYSAAADSALMAVIGIVCFLLNIXXXXXXXXXXXXXVTGQVIKAFAYPLTFFMIPFTLYFLLFCWCGHLGFGAQNENYQTIIRSIVTQFLHLLGATDFDGVRDASPIFGPMYYIAYAAFMMFIVFNIFMAIICEAIDEDYDEEFEKQAGDIQMVEFLTKKVKDIIGIED 3845
W++ S + +G+P+ G++T Y GGGYV LG + + +L L W D TRA FVE TVYNANVNLF L ET G F A + Y ++ + AEL++ F+ ++ + + ++M + YF S +N +E+ ++ + V R + +++ +++ ++ +SF +AAAD+AL +I + L +K LL+ + ++ ++ FMI L + +L FG + +Y+T+ + T LG +++ V D SP+ G + FM F+V N+F+++I A E ++++ + + + ++V+ L K+ +GI+
Sbjct: 2079 WQYQSQDQRQGYPIWGKLTVYRGGGYVVPLGTDRQKHVKILRYLFDNTWLDALTRAVFVESTVYNANVNLFCIVTLTLETSALGTFFTHAALQSLRLYPFTDGWHPFVVAAELIYFLFLLYYMVVQGKRMSKETWGYFCSKWNLLELAIILASWSALAVFVKRAVLAERDLQRCRNHREEGISFSETAAADAALGYIIAFLVLLSTVKLWHLLRLNPKMNMITAALRRAWGDISGFMIVILTMLLAYSIASNLIFGWKLRSYKTLFDAAETMVSLQLGIFNYEEVLDYSPVLGSFLIGSCIVFMTFVVLNLFISVILVAFSE--EQKYYQLSEEGEIVDLLLMKILSFLGIKS 2429 The following BLAST results are available for this feature:
BLAST of TCONS_00062241 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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