TCONS_00062268 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062268
Unique NameTCONS_00062268
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length778

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062268 ID=TCONS_00062268|Name=TCONS_00062268|organism=Clytia hemisphaerica|type=transcript|length=778bp
TGCCTGGGGTTATACTTTCATATAAGTTAGGTGACTTTTCTTCTGGTCAT
TTATAAAATGACAGTAGTGAATATGGTACAATAAACTATTTCCAGAAATT
ACCCTAGAAAAACATGTAGCTTATTGAGCTCAAGATATCAGAATTCTGAA
TGAGTAATCTCATTATGTCAAAGTGTGAATTACTTTTGCACCTGAATGAC
ATTATTTGGCAACATAGCAATTAttaaaattcacttcaaaatgATTTGGA
CAAGTCATTAATCAAATCACTCATGTTGCATGATTCTTTGAATAACTAGT
ACTGCTAGAAAAGCATTCAATAAAAATTACAACTTCTGACAGAAGATgct
gaaaaataatttaataacaAGCGAACCTATCATTTTTTTGTATTCAATCA
TTTATTTCATCAATCTGTCTATCCTGCCACAACTCGTGTTGCAAAAAGTC
TGTTTGGAGAAATATGATGATGGACTTCATGGAAATGGTACGACATCATC
GTCATTGTGTGAAGAAAAGTCATCAACAGTTATTACAGCTGATATGCAAA
AGGTAAACATTTTTCTGTATgatcaatcaaattattaaatCTATTGACTG
ACATCAGATCTTAAACCCTTACATCTTGACCATATACgctaaaaaatttg
atttcattaTAGCTCTTTTTATCCAAAACTACAAAGatcttagttttttt
atttatgatgtCAAAAATTGAACTATAACAAACTAGAACACTGCTGGGTT
AATCTGGCAATTGTCTTGCAACTCTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_362:627943..628720-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062268 ID=TCONS_00062268|Name=TCONS_00062268|organism=Clytia hemisphaerica|type=transcript|length=778bp|location=Sequence derived from alignment at scaffold_362:627943..628720- (Clytia hemisphaerica)
TGCCTGGGGTTATACTTTCATATAAGTTAGGTGACTTTTCTTCTGGTCAT
TTATAAAATGACAGTAGTGAATATGGTACAATAAACTATTTCCAGAAATT
ACCCTAGAAAAACATGTAGCTTATTGAGCTCAAGATATCAGAATTCTGAA
TGAGTAATCTCATTATGTCAAAGTGTGAATTACTTTTGCACCTGAATGAC
ATTATTTGGCAACATAGCAATTATTAAAATTCACTTCAAAATGATTTGGA
CAAGTCATTAATCAAATCACTCATGTTGCATGATTCTTTGAATAACTAGT
ACTGCTAGAAAAGCATTCAATAAAAATTACAACTTCTGACAGAAGATGCT
GAAAAATAATTTAATAACAAGCGAACCTATCATTTTTTTGTATTCAATCA
TTTATTTCATCAATCTGTCTATCCTGCCACAACTCGTGTTGCAAAAAGTC
TGTTTGGAGAAATATGATGATGGACTTCATGGAAATGGTACGACATCATC
GTCATTGTGTGAAGAAAAGTCATCAACAGTTATTACAGCTGATATGCAAA
AGGTAAACATTTTTCTGTATGATCAATCAAATTATTAAATCTATTGACTG
ACATCAGATCTTAAACCCTTACATCTTGACCATATACGCTAAAAAATTTG
ATTTCATTATAGCTCTTTTTATCCAAAACTACAAAGATCTTAGTTTTTTT
ATTTATGATGTCAAAAATTGAACTATAACAAACTAGAACACTGCTGGGTT
AATCTGGCAATTGTCTTGCAACTCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039025XLOC_039025Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062268-exon-scaffold_362-1575043694:627943..628720TCONS_00062268-exon-scaffold_362-1575043694:627943..628720Clytia hemisphaericaexon
TCONS_00062268-exon-scaffold_362-1510915933:627943..628720TCONS_00062268-exon-scaffold_362-1510915933:627943..628720Clytia hemisphaericaexon
TCONS_00062268-exon-scaffold_362-1491911889:627943..628720TCONS_00062268-exon-scaffold_362-1491911889:627943..628720Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_362supercontigscaffold_362:627943..628720 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.862504	0.280021	0.690625	0	0.102977	0.0732136	0	0	0	0.0354873	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062268 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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