|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062306 ID=TCONS_00062306|Name=TCONS_00062306|organism=Clytia hemisphaerica|type=transcript|length=1004bp
AAAACGACAATTGAACTATAATTGTGTCACCACTTTCAAGATAATTCGGA
TAGCCGCAACAAGATTGGTACCCAAGGCTATATAAGTTATCGAACCTTGT
ACGGTTTGATGGCGTTAGTTTTATTCCAAAATAAGTTCATATCTACGGCA
CAACACTTGCAGAAGAACACGTATAATATTGTAAAGTTCTCGATAAAATG
GTGGATTGTTTTTTTTCAGCACTTCAATTTTCGGCAAAGTGCTCGCTTCA
CATCTTTGTTGAAAAGCACAAAAATGATTGGATCGATAATCCCGTTACAC
ATTCCAATCATTTCAACAGCAAAAGTGAATGGGTCAAACACATGCGCATA
AAAGCCGTCCGTAAACAAGTGTAGGAGAATATGCACCAATGAGGGTGTCC
AAAATATCGCATAAGTTGCTACGATCATAAGGAACCCAATGATAGATTTC
TTTAATTGTTTTCGTCGTCTTTGTTCGGTTAAGGTGTGCGAGCCAACCAT
GTTTCGTATGATATCGCTTCGGTGACGCCGGGCTAGCAACCATACTCTAA
GATTCAAAATGGTTAACACGATgattgaaaaagccaaaatggTTGCCATG
CAGCAATATAGGATAAAGATACGGTGCCGGAAATACCAAATGATGACTGC
AGCAAAGGAGCCTGAAAATAACCAAGAAGCAACGATCAGCGTCATAATTT
TAGTTTTTGATTGCCATACGAGAGGGTTGAGGATGACAGAATATCGGTCT
TTGTTGGAAATCAACATGCAGAGAAACATCTGTAGCAACAGTGCGTTATT
GAAGATAACAATGTCTGTGTCCAATTTGAGATATGTCAGAGATGACATAA
TGATATGTCCTAACTGTAGGTTTAAAAAAAGGTAGGTCGAACTCCGATAT
AACGGTCGTCTCTTGTGATACACCAGAAAGctaaaaatgatcaaattgaG
CAGAATAATGAGTGCTGAGTCAGCATAACGGATGATAGTGAAAATGTGGA
GTTT Run BLAST on NCBI protein sequence of TCONS_00062306-protein >TCONS_00062306-protein ID=TCONS_00062306-protein|Name=TCONS_00062306-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
KLHIFTIIRYADSALIILLNLIIFSFLVYHKRRPLYRSSTYLFLNLQLGH
IIMSSLTYLKLDTDIVIFNNALLLQMFLCMLISNKDRYSVILNPLVWQSK
TKIMTLIVASWLFSGSFAAVIIWYFRHRIFILYCCMATILAFSIIVLTIL
NLRVWLLARRHRSDIIRNMVGSHTLTEQRRRKQLKKSIIGFLMIVATYAI
FWTPSLVHILLHLFTDGFYAHVFDPFTFAVEMIGMCNGIIDPIIFVLFNK
DVKRALCRKLKC Run BLAST on NCBI transcript from alignment at scaffold_362:237584..238587 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062306 ID=TCONS_00062306|Name=TCONS_00062306|organism=Clytia hemisphaerica|type=transcript|length=1004bp|location=Sequence derived from alignment at scaffold_362:237584..238587 (Clytia hemisphaerica)
AAACTCCACATTTTCACTATCATCCGTTATGCTGACTCAGCACTCATTAT
TCTGCtcaatttgatcatttttagCTTTCTGGTGTATCACAAGAGACGAC
CGTTATATCGGAGTTCGACCTACCTTTTTTTAAACCTACAGTTAGGACAT
ATCATTATGTCATCTCTGACATATCTCAAATTGGACACAGACATTGTTAT
CTTCAATAACGCACTGTTGCTACAGATGTTTCTCTGCATGTTGATTTCCA
ACAAAGACCGATATTCTGTCATCCTCAACCCTCTCGTATGGCAATCAAAA
ACTAAAATTATGACGCTGATCGTTGCTTCTTGGTTATTTTCAGGCTCCTT
TGCTGCAGTCATCATTTGGTATTTCCGGCACCGTATCTTTATCCTATATT
GCTGCATGGCAAccattttggctttttcaatcATCGTGTTAACCATTTTG
AATCTTAGAGTATGGTTGCTAGCCCGGCGTCACCGAAGCGATATCATACG
AAACATGGTTGGCTCGCACACCTTAACCGAACAAAGACGACGAAAACAAT
TAAAGAAATCTATCATTGGGTTCCTTATGATCGTAGCAACTTATGCGATA
TTTTGGACACCCTCATTGGTGCATATTCTCCTACACTTGTTTACGGACGG
CTTTTATGCGCATGTGTTTGACCCATTCACTTTTGCTGTTGAAATGATTG
GAATGTGTAACGGGATTATCGATCCAATCATTTTTGTGCTTTTCAACAAA
GATGTGAAGCGAGCACTTTGCCGAAAATTGAAGTGCTGAAAAAAAACAAT
CCACCATTTTATCGAGAACTTTACAATATTATACGTGTTCTTCTGCAAGT
GTTGTGCCGTAGATATGAACTTATTTTGGAATAAAACTAACGCCATCAAA
CCGTACAAGGTTCGATAACTTATATAGCCTTGGGTACCAATCTTGTTGCG
GCTATCCGAATTATCTTGAAAGTGGTGACACAATTATAGTTCAATTGTCG
TTTT Coding sequence (CDS) from alignment at scaffold_362:237584..238587 >TCONS_00062306 ID=TCONS_00062306|Name=TCONS_00062306|organism=Clytia hemisphaerica|type=CDS|length=789bp|location=Sequence derived from alignment at scaffold_362:237584..238587 (Clytia hemisphaerica)
AAACTCCACATTTTCACTATCATCCGTTATGCTGACTCAGCACTCATTAT
TCTGCtcaatttgatcatttttagCTTTCTGGTGTATCACAAGAGACGAC
CGTTATATCGGAGTTCGACCTACCTTTTTTTAAACCTACAGTTAGGACAT
ATCATTATGTCATCTCTGACATATCTCAAATTGGACACAGACATTGTTAT
CTTCAATAACGCACTGTTGCTACAGATGTTTCTCTGCATGTTGATTTCCA
ACAAAGACCGATATTCTGTCATCCTCAACCCTCTCGTATGGCAATCAAAA
ACTAAAATTATGACGCTGATCGTTGCTTCTTGGTTATTTTCAGGCTCCTT
TGCTGCAGTCATCATTTGGTATTTCCGGCACCGTATCTTTATCCTATATT
GCTGCATGGCAAccattttggctttttcaatcATCGTGTTAACCATTTTG
AATCTTAGAGTATGGTTGCTAGCCCGGCGTCACCGAAGCGATATCATACG
AAACATGGTTGGCTCGCACACCTTAACCGAACAAAGACGACGAAAACAAT
TAAAGAAATCTATCATTGGGTTCCTTATGATCGTAGCAACTTATGCGATA
TTTTGGACACCCTCATTGGTGCATATTCTCCTACACTTGTTTACGGACGG
CTTTTATGCGCATGTGTTTGACCCATTCACTTTTGCTGTTGAAATGATTG
GAATGTGTAACGGGATTATCGATCCAATCATTTTTGTGCTTTTCAACAAA
GATGTGAAGCGAGCACTTTGCCGAAAATTGAAGTGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062306-exon-scaffold_362-1491911889:237584..238587 | TCONS_00062306-exon-scaffold_362-1491911889:237584..238587 | Clytia hemisphaerica | exon |
| TCONS_00062306-exon-scaffold_362-1510915933:237584..238587 | TCONS_00062306-exon-scaffold_362-1510915933:237584..238587 | Clytia hemisphaerica | exon |
| TCONS_00062306-exon-scaffold_362-1575043694:237584..238587 | TCONS_00062306-exon-scaffold_362-1575043694:237584..238587 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:237584..238587 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
|
