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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062376 ID=TCONS_00062376|Name=TCONS_00062376|organism=Clytia hemisphaerica|type=transcript|length=1986bp
aatttttgaagttATGAGGCTAAAACAGAGCTAAGATTAAAGTGTCACAA
TTtaaacaaaaagttttgaaataacaaaagaaataattGTTTATACATAA
ATCTTACAAAAACGaagcaaaaaattgaattagTCCATCCAACACACTAT
CTAAAAGTATCGGTGTTCATGGTAATTAGTTTTCAGAAGAAATATTTCTC
CAGTGTAGAAGAACGAGGGTTCAACCGAAACCAAACATGTATGACAGCGT
AAACAATTTGAATTGTTGCCAAAGGCGTGAATGTTAGAATCACCACAAGG
TAATCTATTCCTCTCATACAACCTGAATCAAAAGGACTTTGGAATATCTT
TCCTCCATCCTCAACAGTAAAACAGGATCGGTCAATTTTGCCGGTACCGT
ATTGGTAAGTGGAACCAATGACACGACACATGGTTGCCATGGCGATTGGG
ATCATCATATAGGAAAAAAACTTCATCTTGACTGATCCGTCTTTCTCTTG
GTTAGGGTCGAGTGGTTTCATGTTGGCCCGTCTTCGATGTTGATTCTCCA
GTTCATCAAGCTTCTGAATATTTTCTTTACACATTTGTTGTAATGCCTGA
GCTGCAAGCAGTTCAGAATCGATTTCCAAACCATCCTGTTTACGTTGTTC
GATGATATCATTAACGACATTACCTGAATCTTCATTTCCATCCTTGTCCA
TAATCTTCACCAAACGAGCACGTTTTGCATTTTGAATAGCTGAATAAATA
GTCCAGCAAGTCATGACCAGTTGCATTGCACTCTTCACAAACAAATACCA
ATCGGTTTTTCGGTTGACAAATTTGTCCATATAAAAATACTCCAAGATAA
GCTGAATAGAACCTATGAACAAAAATGTTATGAAGGATTTCATATCTTTC
ATAAAAACATCGTATTGTCCCACTGGACAACAATCACAAGAACAAAATTG
GACCATGATGCTTAACCAGATGAGTGCGTAAATTACATTAGTGACGTAAG
CGTTTCGGTGAACAACATTATCGAATATTTGACCAGATTCTAATTGGTAT
AGCAAGAAGCAATCCAGGATCACATCCAGAACTTCCAAAGCTTGTTTAAC
ATACGTCAGACATTTGATTGTTACGAAAGTTTTGAGTGATATGAATTTCC
ACCCTAAATCTTCCACTTTGAAACACCGGCCGATCCCCTGGAAACATCTC
ACAATACAATTCAATTTGATTTTATCTTTATCTCCATTCTCGCTCTCGTC
TTTGATATCAAATTCAACTCGATACATCTCAAATTCTCGGCTAATCATAN
CTCCATTCTCGCTCTCGTCTTTGATATCAAATTCAACTCGATACATCTCA
AATTCTTTGCTGATCATTGAATCAGTTCTTTCAAGTTTATGATTCTTCCT
AAATTTGAATAAACGTCTTTCATACTCCATCATGATTTCATGATTTTCTC
GGACAGCAAATTTACTTCGCCACAATCTGAAGATGAGGACAAGCAAAGCT
ACAATTGCTGGCACTATTACCATAGCTTTCAAACCATCCTCACTATATCT
AGATTCCCATCTTGTTAAATTATTACCACAAAACGTATCATTCCCAACTG
TAATGGGTAGCTTGAAACATTCGAATACAGTATTTTCTGTAGTGTTGTTT
AATGTCGTCATGTTTAATGTAGAACTGTTTCCAAAAGCCATTGTTGCGTT
TCTTAAGCTGTCTTGATATGGAAATGATTCTGATTCTCAACTGTATTTTC
GAGCTAATTCTTTGCTTTTATGATGACTACCTCTATGCATTATCACAGAT
GATGAAAACCACTTTATTATGCCATTGCATTGATTGGttaataatctttt
tttataCAAACTTTTTATTGTCTTATTGTCTCgggtattttattgatttt
aatcaCTTCACTTTAGTTACGTGCTTGTGCGATGCACTGAAATGAAACTC
ATGCTTGAACTCATGTGagaaattgtttattttctG Run BLAST on NCBI transcript from alignment at scaffold_364:153610..155595+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062376 ID=TCONS_00062376|Name=TCONS_00062376|organism=Clytia hemisphaerica|type=transcript|length=1986bp|location=Sequence derived from alignment at scaffold_364:153610..155595+ (Clytia hemisphaerica)
aatttttgaagttATGAGGCTAAAACAGAGCTAAGATTAAAGTGTCACAA
TTtaaacaaaaagttttgaaataacaaaagaaataattGTTTATACATAA
ATCTTACAAAAACGaagcaaaaaattgaattagTCCATCCAACACACTAT
CTAAAAGTATCGGTGTTCATGGTAATTAGTTTTCAGAAGAAATATTTCTC
CAGTGTAGAAGAACGAGGGTTCAACCGAAACCAAACATGTATGACAGCGT
AAACAATTTGAATTGTTGCCAAAGGCGTGAATGTTAGAATCACCACAAGG
TAATCTATTCCTCTCATACAACCTGAATCAAAAGGACTTTGGAATATCTT
TCCTCCATCCTCAACAGTAAAACAGGATCGGTCAATTTTGCCGGTACCGT
ATTGGTAAGTGGAACCAATGACACGACACATGGTTGCCATGGCGATTGGG
ATCATCATATAGGAAAAAAACTTCATCTTGACTGATCCGTCTTTCTCTTG
GTTAGGGTCGAGTGGTTTCATGTTGGCCCGTCTTCGATGTTGATTCTCCA
GTTCATCAAGCTTCTGAATATTTTCTTTACACATTTGTTGTAATGCCTGA
GCTGCAAGCAGTTCAGAATCGATTTCCAAACCATCCTGTTTACGTTGTTC
GATGATATCATTAACGACATTACCTGAATCTTCATTTCCATCCTTGTCCA
TAATCTTCACCAAACGAGCACGTTTTGCATTTTGAATAGCTGAATAAATA
GTCCAGCAAGTCATGACCAGTTGCATTGCACTCTTCACAAACAAATACCA
ATCGGTTTTTCGGTTGACAAATTTGTCCATATAAAAATACTCCAAGATAA
GCTGAATAGAACCTATGAACAAAAATGTTATGAAGGATTTCATATCTTTC
ATAAAAACATCGTATTGTCCCACTGGACAACAATCACAAGAACAAAATTG
GACCATGATGCTTAACCAGATGAGTGCGTAAATTACATTAGTGACGTAAG
CGTTTCGGTGAACAACATTATCGAATATTTGACCAGATTCTAATTGGTAT
AGCAAGAAGCAATCCAGGATCACATCCAGAACTTCCAAAGCTTGTTTAAC
ATACGTCAGACATTTGATTGTTACGAAAGTTTTGAGTGATATGAATTTCC
ACCCTAAATCTTCCACTTTGAAACACCGGCCGATCCCCTGGAAACATCTC
ACAATACAATTCAATTTGATTTTATCTTTATCTCCATTCTCGCTCTCGTC
TTTGATATCAAATTCAACTCGATACATCTCAAATTCTCGGCTAATCATAN
CTCCATTCTCGCTCTCGTCTTTGATATCAAATTCAACTCGATACATCTCA
AATTCTTTGCTGATCATTGAATCAGTTCTTTCAAGTTTATGATTCTTCCT
AAATTTGAATAAACGTCTTTCATACTCCATCATGATTTCATGATTTTCTC
GGACAGCAAATTTACTTCGCCACAATCTGAAGATGAGGACAAGCAAAGCT
ACAATTGCTGGCACTATTACCATAGCTTTCAAACCATCCTCACTATATCT
AGATTCCCATCTTGTTAAATTATTACCACAAAACGTATCATTCCCAACTG
TAATGGGTAGCTTGAAACATTCGAATACAGTATTTTCTGTAGTGTTGTTT
AATGTCGTCATGTTTAATGTAGAACTGTTTCCAAAAGCCATTGTTGCGTT
TCTTAAGCTGTCTTGATATGGAAATGATTCTGATTCTCAACTGTATTTTC
GAGCTAATTCTTTGCTTTTATGATGACTACCTCTATGCATTATCACAGAT
GATGAAAACCACTTTATTATGCCATTGCATTGATTGGttaataatctttt
tttataCAAACTTTTTATTGTCTTATTGTCTCgggtattttattgatttt
aatcaCTTCACTTTAGTTACGTGCTTGTGCGATGCACTGAAATGAAACTC
ATGCTTGAACTCATGTGagaaattgtttattttctG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062376-exon-scaffold_364-1491911889:153610..155595 | TCONS_00062376-exon-scaffold_364-1491911889:153610..155595 | Clytia hemisphaerica | exon |
| TCONS_00062376-exon-scaffold_364-1510915933:153610..155595 | TCONS_00062376-exon-scaffold_364-1510915933:153610..155595 | Clytia hemisphaerica | exon |
| TCONS_00062376-exon-scaffold_364-1575043694:153610..155595 | TCONS_00062376-exon-scaffold_364-1575043694:153610..155595 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_364 | supercontig | scaffold_364:153610..155595 + |
Blast
The following BLAST results are available for this feature:
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