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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062379 ID=TCONS_00062379|Name=TCONS_00062379|organism=Clytia hemisphaerica|type=transcript|length=2180bp
tttcaattcaatttcaatttttgataaaaatgtgaTCTTTAGGAACGCTA
AGAATAGAAATAGGAAAGAAATATATGTTTTGCATTAAAAACAAGATTGA
ATTTACATATTATATATTAATAAAGCTTCAGCCATTTGTTATAGAGAATT
GAAATTCCATTTACATTTTATGAAAAGCCTTCTTTAGAACATGCGATCGA
TTTAAAAGAATGTTCTGGCTGCTCAGATTCTCCGTCTGTCGCTGTTTCCC
TTGGTAACGACGGTTTTTGCAAAGACGTCAAATCACAATGATGTCCCTTA
CTTAGTTCCgtaatttgtataattttgaACTTTCGAGGTTTTTCTAAGGG
TGTACGCCGCTCAAAAGAACTCGACGGTTGACTTTTACTCGTCAAACGGC
AAATGGGACGGCTTTGAGATCTTAATGATGTCATTCCGGTCACGGCGTTA
TCACATCGGAGTAAATCATCATCAAACGACAAAGTTCTTTGTATACTGCG
GAAATCTCGTTGGCAAATATTGAGAACCTCAAAATCACAACTTTTCGTAA
ATGCCGATGAATCGTCGTAACAGGTCGTGTCGTCCGACGATCGTTTTCGT
TTACTCGGTGATCTGATGAGGTTTGTCGGTAAAGATTCGCTTACTATCGG
TGGCCCAAATGGAGGTCTATTGTTCTTTTCCTCGTAATATGAATCGCCTT
TCTTTCGTAATTCAGAGTGTTCGTAGTCATCAATGTCCCGAAAATCTAAT
GCTGTTGCATATTTCTTTGATGACAAGGAACCGCTGGAGTCGACAGCCTC
CTCCGTAGCTTGGATACCTGCAACGTTTTTCGCTTTTCCATCGCCAGGGC
GTGGCGCAAAGTTTTGATGTAGCCTAGAAGCTGCCTTCTCCTGGAATGCG
TTTGATATGAACAAATAGTCGGTTGATAATGGTAGTTTTTCCAGTTTTTG
TGAAAGAAAACTAATCGGtgaatctaccattttgatagGGACACGTCTGT
GATAtttattgatttgaagtttGACTTCCAACTCTCCAAGAATAAGCAGT
GCAATATATGTAATATTAAAACGTTCATTCATTCATACATTCATTTGATA
AACTAACTCTgtaatgtaaaaaaaatattgagatAAAGTTAGAAGCGTGT
TTGATTGATAAGAAAGAATATCATCAAAAAAAGACTTGTTATGTACTTTT
TCTCAGACCAGTGCGAAACACTCGCTTCATGAAAAGCTTCTATCTAAAAA
TGTGTAAACACTAAAAATTACTACAACTCTTAAAAGGATATATTATAGTA
GAGGATTATACATAAATATATTCCAACGTAGCATATGTTATCACATACAG
AGAGtttgaaaaaatagcaaaattatTATATACACATAACATTTTCCCTG
TTTGTGTTGAAAGCAAAGTTTAGAGTAGAAATTGTACACCTTAGCAGTAG
TATAAGCCTTTCTCCTCTCTTCTATATGACTACTTGCTAACTACTACGAG
ATAGATAGGTTGTCTTGCTGTGAAGAGATCACGATATATGCAAATCACAT
TAAAGCCCTTCTCTTTGGTTTTCTTTATTCGTTAGATAGAACAGACTTTT
ACTTCAACTTTTTACTACAATCATTGATAAATCTTTCTGTTTTAAAAACC
TCCCTATCCCTTCTTTGAACCCCTTTTGTTAGTGTCATCTGCAAAATATG
ATTTCAGATATTATACCACATAGAAGATTTTCTCTTTAAATTACTATTTT
CCATGTCTCTATGTCTCTATAAATTCTTAAAAGTGTTTTTTCGACATATC
TTgctttcatcttcttttttccttttttttcaaaaagttNCTATGTCTCT
ATAAATTCTTAAAAGTGTTTTTTCGACATATCTTgctttcatcttctttt
ttctttttttttcaaaaagttagtttttcaattttgattcttCAATAGTT
GTTCATTCAGACAGAGTGTACTTCTTGCTTCTATAaccaatattttattt
tttgtttgaattttcttatttttctgttTGGTGTTTGAGTAGGTCGTGAG
AGCACTCCTCCGCTGCAAAACTTTCCTGAAGAAAACCCTCCATAATTTGT
CTCGGTTGAGCGATCTTGCTCTACGACCTGACCAAGTGATACagcaaaaa
atatgttttgttgttttacaCTCAGTCGTT Run BLAST on NCBI protein sequence of TCONS_00062379-protein >TCONS_00062379-protein ID=TCONS_00062379-protein|Name=TCONS_00062379-protein|organism=Clytia hemisphaerica|type=polypeptide|length=304bp
MNERFNITYIALLILGELEVKLQINKYHRRVPIKMVDSPISFLSQKLEKL
PLSTDYLFISNAFQEKAASRLHQNFAPRPGDGKAKNVAGIQATEEAVDSS
GSLSSKKYATALDFRDIDDYEHSELRKKGDSYYEEKNNRPPFGPPIVSES
LPTNLIRSPSKRKRSSDDTTCYDDSSAFTKSCDFEVLNICQRDFRSIQRT
LSFDDDLLRCDNAVTGMTSLRSQSRPICRLTSKSQPSSSFERRTPLEKPR
KFKIIQITELSKGHHCDLTSLQKPSLPRETATDGESEQPEHSFKSIACSK
EGFS Run BLAST on NCBI transcript from alignment at scaffold_364:182356..184535+ Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062379 ID=TCONS_00062379|Name=TCONS_00062379|organism=Clytia hemisphaerica|type=transcript|length=2180bp|location=Sequence derived from alignment at scaffold_364:182356..184535+ (Clytia hemisphaerica)
tttcaattcaatttcaatttttgataaaaatgtgaTCTTTAGGAACGCTA
AGAATAGAAATAGGAAAGAAATATATGTTTTGCATTAAAAACAAGATTGA
ATTTACATATTATATATTAATAAAGCTTCAGCCATTTGTTATAGAGAATT
GAAATTCCATTTACATTTTATGAAAAGCCTTCTTTAGAACATGCGATCGA
TTTAAAAGAATGTTCTGGCTGCTCAGATTCTCCGTCTGTCGCTGTTTCCC
TTGGTAACGACGGTTTTTGCAAAGACGTCAAATCACAATGATGTCCCTTA
CTTAGTTCCgtaatttgtataattttgaACTTTCGAGGTTTTTCTAAGGG
TGTACGCCGCTCAAAAGAACTCGACGGTTGACTTTTACTCGTCAAACGGC
AAATGGGACGGCTTTGAGATCTTAATGATGTCATTCCGGTCACGGCGTTA
TCACATCGGAGTAAATCATCATCAAACGACAAAGTTCTTTGTATACTGCG
GAAATCTCGTTGGCAAATATTGAGAACCTCAAAATCACAACTTTTCGTAA
ATGCCGATGAATCGTCGTAACAGGTCGTGTCGTCCGACGATCGTTTTCGT
TTACTCGGTGATCTGATGAGGTTTGTCGGTAAAGATTCGCTTACTATCGG
TGGCCCAAATGGAGGTCTATTGTTCTTTTCCTCGTAATATGAATCGCCTT
TCTTTCGTAATTCAGAGTGTTCGTAGTCATCAATGTCCCGAAAATCTAAT
GCTGTTGCATATTTCTTTGATGACAAGGAACCGCTGGAGTCGACAGCCTC
CTCCGTAGCTTGGATACCTGCAACGTTTTTCGCTTTTCCATCGCCAGGGC
GTGGCGCAAAGTTTTGATGTAGCCTAGAAGCTGCCTTCTCCTGGAATGCG
TTTGATATGAACAAATAGTCGGTTGATAATGGTAGTTTTTCCAGTTTTTG
TGAAAGAAAACTAATCGGtgaatctaccattttgatagGGACACGTCTGT
GATAtttattgatttgaagtttGACTTCCAACTCTCCAAGAATAAGCAGT
GCAATATATGTAATATTAAAACGTTCATTCATTCATACATTCATTTGATA
AACTAACTCTgtaatgtaaaaaaaatattgagatAAAGTTAGAAGCGTGT
TTGATTGATAAGAAAGAATATCATCAAAAAAAGACTTGTTATGTACTTTT
TCTCAGACCAGTGCGAAACACTCGCTTCATGAAAAGCTTCTATCTAAAAA
TGTGTAAACACTAAAAATTACTACAACTCTTAAAAGGATATATTATAGTA
GAGGATTATACATAAATATATTCCAACGTAGCATATGTTATCACATACAG
AGAGtttgaaaaaatagcaaaattatTATATACACATAACATTTTCCCTG
TTTGTGTTGAAAGCAAAGTTTAGAGTAGAAATTGTACACCTTAGCAGTAG
TATAAGCCTTTCTCCTCTCTTCTATATGACTACTTGCTAACTACTACGAG
ATAGATAGGTTGTCTTGCTGTGAAGAGATCACGATATATGCAAATCACAT
TAAAGCCCTTCTCTTTGGTTTTCTTTATTCGTTAGATAGAACAGACTTTT
ACTTCAACTTTTTACTACAATCATTGATAAATCTTTCTGTTTTAAAAACC
TCCCTATCCCTTCTTTGAACCCCTTTTGTTAGTGTCATCTGCAAAATATG
ATTTCAGATATTATACCACATAGAAGATTTTCTCTTTAAATTACTATTTT
CCATGTCTCTATGTCTCTATAAATTCTTAAAAGTGTTTTTTCGACATATC
TTgctttcatcttcttttttccttttttttcaaaaagttNCTATGTCTCT
ATAAATTCTTAAAAGTGTTTTTTCGACATATCTTgctttcatcttctttt
ttctttttttttcaaaaagttagtttttcaattttgattcttCAATAGTT
GTTCATTCAGACAGAGTGTACTTCTTGCTTCTATAaccaatattttattt
tttgtttgaattttcttatttttctgttTGGTGTTTGAGTAGGTCGTGAG
AGCACTCCTCCGCTGCAAAACTTTCCTGAAGAAAACCCTCCATAATTTGT
CTCGGTTGAGCGATCTTGCTCTACGACCTGACCAAGTGATACagcaaaaa
atatgttttgttgttttacaCTCAGTCGTT Coding sequence (CDS) from alignment at scaffold_364:182356..184535+ >TCONS_00062379 ID=TCONS_00062379|Name=TCONS_00062379|organism=Clytia hemisphaerica|type=CDS|length=915bp|location=Sequence derived from alignment at scaffold_364:182356..184535+ (Clytia hemisphaerica)
TTATGAAAAGCCTTCTTTAGAACATGCGATCGATTTAAAAGAATGTTCTG
GCTGCTCAGATTCTCCGTCTGTCGCTGTTTCCCTTGGTAACGACGGTTTT
TGCAAAGACGTCAAATCACAATGATGTCCCTTACTTAGTTCCgtaatttg
tataattttgaACTTTCGAGGTTTTTCTAAGGGTGTACGCCGCTCAAAAG
AACTCGACGGTTGACTTTTACTCGTCAAACGGCAAATGGGACGGCTTTGA
GATCTTAATGATGTCATTCCGGTCACGGCGTTATCACATCGGAGTAAATC
ATCATCAAACGACAAAGTTCTTTGTATACTGCGGAAATCTCGTTGGCAAA
TATTGAGAACCTCAAAATCACAACTTTTCGTAAATGCCGATGAATCGTCG
TAACAGGTCGTGTCGTCCGACGATCGTTTTCGTTTACTCGGTGATCTGAT
GAGGTTTGTCGGTAAAGATTCGCTTACTATCGGTGGCCCAAATGGAGGTC
TATTGTTCTTTTCCTCGTAATATGAATCGCCTTTCTTTCGTAATTCAGAG
TGTTCGTAGTCATCAATGTCCCGAAAATCTAATGCTGTTGCATATTTCTT
TGATGACAAGGAACCGCTGGAGTCGACAGCCTCCTCCGTAGCTTGGATAC
CTGCAACGTTTTTCGCTTTTCCATCGCCAGGGCGTGGCGCAAAGTTTTGA
TGTAGCCTAGAAGCTGCCTTCTCCTGGAATGCGTTTGATATGAACAAATA
GTCGGTTGATAATGGTAGTTTTTCCAGTTTTTGTGAAAGAAAACTAATCG
GtgaatctaccattttgatagGGACACGTCTGTGATAtttattgatttga
agtttGACTTCCAACTCTCCAAGAATAAGCAGTGCAATATATGTAATATT
AAAACGTTCATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062379-exon-scaffold_364-1491911889:182356..184535 | TCONS_00062379-exon-scaffold_364-1491911889:182356..184535 | Clytia hemisphaerica | exon |
| TCONS_00062379-exon-scaffold_364-1510915933:182356..184535 | TCONS_00062379-exon-scaffold_364-1510915933:182356..184535 | Clytia hemisphaerica | exon |
| TCONS_00062379-exon-scaffold_364-1575043694:182356..184535 | TCONS_00062379-exon-scaffold_364-1575043694:182356..184535 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_364 | supercontig | scaffold_364:182356..184535 + |
Blast
The following BLAST results are available for this feature:
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