TCONS_00062385 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062385
Unique NameTCONS_00062385
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1889

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062385 ID=TCONS_00062385|Name=TCONS_00062385|organism=Clytia hemisphaerica|type=transcript|length=1889bp
CAGGTTTTCACtgagaataaataaaaacattccAAAGTACGGCTTCTGAG
CAATCGAACAACTCACAAAAGAAATGGCTACCCGAAGCGAAGCGTTAAAC
GTGtggaaaaactgaatttttaaGAGCAGTTTCATGAAGTTATAGAGTTT
ATGGATCAATTTAACATAGCTGATCGGACTCAGATAGTTTAAAATGGAGG
AACTACAAGGACAGAGTGAAATTAAGCCACCTTCAGCCCATAAACTTGTA
AAGTATTTCCCACAGTTTACATTGAAAGTCCTTCATATGGTCGTCAAATA
CACTTTGAAATATTTACTATTAATCCTGACATTACTGGCTGAATGNTTAC
ATTGAAAGTCTTTCATATGGTCGTCAAATACACTTTGAAATATTTACTAT
TAATCCTGACATTACTGGCTGAATGTAGGAGAGTTTATTACTTTTCAACC
AAACAATTTAGTGGGGGACTGGGCTACGACTATGAACAAGATATGGGCAA
TCTAAGCAAGCTTCCAAGACACATGAGTTTTGTTATTAATGAAGATGTGA
CAACTGATTATTGTGACATTGCAAATTTGATTGTGTGGACCATAGCAATG
GGAATTCCATATATTTCCCTATATGATCGCCATGGCATTCTCAAAGCAGG
AGAATCAAGGCTTGGAAAAGTCATCAAACAAAAAGTTGTCAAAACATTTG
GTCAGAAGAAAGCACAAGGAATTGATGTTGTCCTGAAGGATAGTTCTTAT
AGATATCAAAATGGAATAAcaTACCCAAAGAAGTTTTGTGTTCAGTTACT
ATCTGAAGAAGATGGCAAGGCAGACATTATTTCAACAACTAAAAGGATAG
CAGCAGATTATGCAGACAATAATATAGAGGAGAAGAATATAAATATTGAC
CATATCAATAAATCTCTGAAAGcaATTGAAAATATACCAGACCCAGAGCT
TGTTGTACAATTTGGAAATATCTATTCACTAAATGGTTATTTACCCTGGC
AGACGAGATTATCAGAAATTCTGAATTTAAAAACACACAAGAAGATATGT
TACAGTCAATACTACAATCTACTTGCGCGCTTCAGCAAATGTGATCAACG
GTTCGGAAAATAATATTAAAAGAAACGAAGAGTTAGTCTATTTTTATTGA
TTGATGGTGATCATAAACTGATGTTGCTTGATTCGCAATGTAACCCCAAA
ACTAGCCTctgtaatgaaaataaaattatttttagaacGTGGAGTGCATC
AAGCCGATTCcgattttgaagaattttgtgTTAAGGTCTTCATTCAATCA
AAGTCGTTTCTCGTTATTGGAACATTTTCGAGCTTTCAGATCCTGAGTTC
TTTGCAGGGAATActcctttttctcaaatattacgaatTTGATTGTAGGT
CTGACATTATGAAAGGTTCTTTGTGACTAAGCAACATCAGTTAGTACttt
ttgaattgcaaaaaatgttAAACAATTTCGTTGTCCAATTTATTATTTCA
GTAAACCAGCCTTTAATTTAAGAAACGCAACggcaattttgtaaatattg
acTTTATTATCATAGTATCGAGATGATCAAACCAAGTTTGTGTGCAAACT
AGGATAATCACGTTTtggaattattttgaatttttataataGTAGCAGAA
AGTTTGGgatatattttaaaatttaggaaatttgtaaagctttttttCTC
CCCTGTTGAAGTGGGAAAACCCCAttctttctttaaattttgTTCTAGAA
AGATGAATTAAGAATTTGAACTCTATTACTGTTTCAATATTAATTCGTCT
TTTGCTGTTGAGAAAAGAATGACTACTTCCAGACTATAGccatctctcta
attcgaatgctTCTGtaagtgtctgcccctatatCTGGC
Run BLAST on NCBI

transcript from alignment at scaffold_364:212106..216280+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062385 ID=TCONS_00062385|Name=TCONS_00062385|organism=Clytia hemisphaerica|type=transcript|length=4175bp|location=Sequence derived from alignment at scaffold_364:212106..216280+ (Clytia hemisphaerica)
CAGGTTTTCACtgagaataaataaaaacattccAAAGTACGGCTTCTGAG
CAATCGAACAACTCACAAAAGAAATGGCTACCCGAAGCGAAGCGTTAAAC
GTGtggaaaaactgaatttttaaGAGCAGTTTCATGAAGTTATAGAGTTT
ATGGATCAATTTAACATAGCTGATCGGACTCAGATAGTTTAAAATGGAGG
AACTACAAGGACAGAGTGAAATTAAGCCACCTTCAGCCCATAAACTTGTA
AAGTATTTCCCACAGTTTACATTGAAAGTCCTTCATATGGTCGTCAAATA
CACTTTGAAATATTTACTATTAATCCTGACATTACTGGCTGAATGNTTAC
ATTGAAAGTCTTTCATATGGTCGTCAAATACACTTTGAAATATTTACTAT
TAATCCTGACATTACTGGCTGAATGTAGGAGAGTTTATTACTTTTCAACC
AAACAATTTAGTGGGGGACTGGGCTACGACTATGAACAAGATATGGGCAA
TCTAAGCAAGCTTCCAAGACACATGAGTTTTGTTATTAATGAAGATGTGA
CAACTGATTATTGTGACATTGCAAATTTGATTGTGTGGACCATAGCAATG
GGAATTCCATATATTTCCCTATATGATCGCCATGGTAAGACTTTCATCAA
ATTCTAAAGCTGCCAAAAAGATTGGGGATATGTATACAcattctttttat
atatataagATTTCTACAACCTTCATTAAAGATGGTAGTAACAGGAAAGT
tagaatcgctgattgaaacttattttctttgcttagcgatcAGAGAGGAA
AATACCTTTTGTCtacagtgattccgaccttcctatcaTTCTAGGGTGTG
TtgaacattagaccaacttacggtataagGCTTGGatggccaatttctta
agaaaatggacaaaaatgctcacatggtgaaataaaaaaaatataaaaaa
aaacgtgtacagttgGGATAATGCTAGGCAGGGCTTACTACAGGCAGGCC
ATCTTGAGACGTCTGTTTTGTAAgagacaaaaatctaaaatcaaatctga
aacAGGGCGAGGGGGTTCATTCAGCTGGTACCAGCAGGTAACAGACATCA
TGAtggtcagtcaggcacatcctggcaaatgaacggggtatttttcactt
gcaattggtggcaaatgcaaggggtcgaaaacaaaagtgatgtaatagca
ctgaataccccacgcaattgaaccgggttggaaatattttgcttcatttc
aaagaactgcatggaggaaattttttttccatgggtcaattttgtcttcg
aagattgaagaaacttttaacgaaaaaataaagttcccagttttcttcct
tttttcccattttcagtttgaagttcatttttattcattttcacgctttt
agcgtcctatctcatttacactgggtgacgaataccccatgcaaatgctc
accccgttcatttgccaggatgtgcctgactgatgGTTATACTGCCGTGG
ATATTTGCAtttgtaattttgctgaaagcTTATTTAAAaggaattttatt
ttgtaaCCATGAATTTTCTTTCAGGCATTCTCAAAGCAGGAGAATCAAGG
CTTGGAAAAGTCATCAAACAAAAAGTTGTCAAAACATTTGGTCAGAAGAA
AGCACAAGGAATTGATGTTGTCCTGAAGGATAGTTCTTATAGATATCAAA
ATGGAATAAGTATGATTTTAATTTAAACCGTTTTTTTGCTgcgcaaattt
tgaaataacaaTTTCTTTGAgtcaaaaagttttgtaaagGTGACAAATTG
ACCTGAATTGACACAAATCATAGAAAAAGTGCtatattcaaaaactttct
caaaattATCTGACCGGTATTATCAAAATTCTAAGAATCTGATGgagtgt
tttcttttctttcagcaTACCCAAAGAAGTTTTGTGTTCAGTTACTATCT
GAAGAAGATGGCAAGGCAGACATTATTTCAACAACTAAAAGGATAGCAGC
AGATTATGCAGACAATAATATAGAGGAGAAGAATATAAATATTGACCATA
TCAATAAATCTCTGAAAGGTAGGATTTTAGAAGGTCACTACGTGTTTGAA
ATGTCTAGGATATGCTTTGGTTATCTCtgtctttcttttctttggaAGTC
ACCTGAATGATTCGAGAGAGAGacccggggggggcagctgggcaaaagga
ccgacgggtatgtgcgggcactaagggtgtctttttcaaggcacctcaaa
tgcactgtaagggtcggaaaaactagNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTTTCAGGCATTCTCAAAGCA
GGAGAATCAAGGCTTGGAAAAGTCATCAAACAAAAAGTTGTCAAAACATT
TGGTCAGAAGAAAGCACAAGGAATTGATGTTGTCCTGAAGGATAGTTCTT
ATAGATATCAAAATGGAATAAGTATGATTTTAATTTAAACCGTTTTTTTG
CTgcacaaattttgaaataacaaTTTCTTTGAgtcaaaaagttttgtaaa
gGTGACAAATTGACCTGAATTGACACAAATCATAGAAAAAGTGCTATATA
CAAAAACTACCTCAAAATTATCTGACCGGTATTATCAAAATTCTAAGAAT
CTGATGgagtgttttcttttctttcagcaTACCCAAAGAAGTTTTGTGTT
CAGTTACTATCTGAAGAAGATGGCAAGGCAGACATTATTTCAACAACTAA
AAGGATAGCAGCAGATTATGCAGACAATAATATAGAGGAGAAGAATATAA
ATATTGACCATATCAATAAATCTCTGAAAGGTAGGATTTTAGAAGGTCAC
TACTATTTGAAATGTCTAAGGATATGCTTTGGTTATCTCtgtctttcttt
tctttggaAGTCACCTGAATAATTCGAGAGAGAGAGGAGGAAAAATGAGG
TTTCAAATCAgcgttttattttctttttaagcaATTGAAAATATACCAGA
CCCAGAGCTTGTTGTACAATTTGGAAATATCTATTCACTAAATGGTTATT
TACCCTGGCAGACGAGATTATCAGAAATTCTGTAAGTAAAAGTGTACGCA
GGACCAGGAGAATCTCACAATACATTGAAATACAAAATGACCTAGTCGAA
TTAAAAGACCTCATTTGGTTTTCTTTAAGGGATAATCATGGGGATTTAAT
TTTATAAAATAGTTGTCCTGATTATTTGGTCGGAAATTGTAGACTTGTGT
AGATTTGCGATAatgtaatattttgattttgatgtttgttGTTTGTCTTG
TTTTGTAGGAATTTAAAAACACACAAGAAGATATGTTACAGTCAATACTA
CAATCTACTTGCGCGCTTCAGCAAATGTGATCAACGGTTCGGAAAATAAT
ATTAAAAGAAACGAAGAGTTAGTCTATTTTTATTGATTGATGGTGATCAT
AAACTGATGTTGCTTGATTCGCAATGTAACCCCAAAACTAGCCTctgtaa
tgaaaataaaattatttttagaacGTGGAGTGCATCAAGCCGATTCcgat
tttgaagaattttgtgTTAAGGTCTTCATTCAATCAAAGTCGTTTCTCGT
TATTGGAACATTTTCGAGCTTTCAGATCCTGAGTTCTTTGCAGGGAATAc
tcctttttctcaaatattacgaatTTGATTGTAGGTCTGACATTATGAAA
GGTTCTTTGTGACTAAGCAACATCAGTTAGTACtttttgaattgcaaaaa
atgttAAACAATTTCGTTGTCCAATTTATTATTTCAGTAAACCAGCCTTT
AATTTAAGAAACGCAACggcaattttgtaaatattgacTTTATTATCATA
GTATCGAGATGATCAAACCAAGTTTGTGTGCAAACTAGGATAATCACGTT
TtggaattattttgaatttttataataGTAGCAGAAAGTTTGGgatatat
tttaaaatttaggaaatttgtaaagctttttttCTCCCCTGTTGAAGTGG
GAAAACCCCAttctttctttaaattttgTTCTAGAAAGATGAATTAAGAA
TTTGAACTCTATTACTGTTTCAATATTAATTCGTCTTTTGCTGTTGAGAA
AAGAATGACTACTTCCAGACTATAGccatctctctaattcgaatgctTCT
GtaagtgtctgcccctatatCTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039091XLOC_039091Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062385-exon-scaffold_364-1491911889:212106..212739TCONS_00062385-exon-scaffold_364-1491911889:212106..212739Clytia hemisphaericaexon
TCONS_00062385-exon-scaffold_364-1510915933:212106..212739TCONS_00062385-exon-scaffold_364-1510915933:212106..212739Clytia hemisphaericaexon
TCONS_00062385-exon-scaffold_364-1575043694:212106..212739TCONS_00062385-exon-scaffold_364-1575043694:212106..212739Clytia hemisphaericaexon
TCONS_00062385-exon-scaffold_364-1491911889:213680..213814TCONS_00062385-exon-scaffold_364-1491911889:213680..213814Clytia hemisphaericaexon
TCONS_00062385-exon-scaffold_364-1510915933:213680..213814TCONS_00062385-exon-scaffold_364-1510915933:213680..213814Clytia hemisphaericaexon
TCONS_00062385-exon-scaffold_364-1575043694:213680..213814TCONS_00062385-exon-scaffold_364-1575043694:213680..213814Clytia hemisphaericaexon
TCONS_00062385-exon-scaffold_364-1491911889:214783..214935TCONS_00062385-exon-scaffold_364-1491911889:214783..214935Clytia hemisphaericaexon
TCONS_00062385-exon-scaffold_364-1510915933:214783..214935TCONS_00062385-exon-scaffold_364-1510915933:214783..214935Clytia hemisphaericaexon
TCONS_00062385-exon-scaffold_364-1575043694:214783..214935TCONS_00062385-exon-scaffold_364-1575043694:214783..214935Clytia hemisphaericaexon
TCONS_00062385-exon-scaffold_364-1491911889:215087..215186TCONS_00062385-exon-scaffold_364-1491911889:215087..215186Clytia hemisphaericaexon
TCONS_00062385-exon-scaffold_364-1510915933:215087..215186TCONS_00062385-exon-scaffold_364-1510915933:215087..215186Clytia hemisphaericaexon
TCONS_00062385-exon-scaffold_364-1575043694:215087..215186TCONS_00062385-exon-scaffold_364-1575043694:215087..215186Clytia hemisphaericaexon
TCONS_00062385-exon-scaffold_364-1491911889:215414..216280TCONS_00062385-exon-scaffold_364-1491911889:215414..216280Clytia hemisphaericaexon
TCONS_00062385-exon-scaffold_364-1510915933:215414..216280TCONS_00062385-exon-scaffold_364-1510915933:215414..216280Clytia hemisphaericaexon
TCONS_00062385-exon-scaffold_364-1575043694:215414..216280TCONS_00062385-exon-scaffold_364-1575043694:215414..216280Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:212106..216280 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.45874e-09	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00062385 vs. Swiss-Prot (Human)
Match: NGBR (Dehydrodolichyl diphosphate synthase complex subunit NUS1 OS=Homo sapiens GN=NUS1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.646e-32
Identity = 78/218 (35.78%), Postives = 120/218 (55.05%), Query Frame = 1 
Query:  481 YEQDMGNLSKLPRHMSFVINE-DVTTDYCDIANLIVWTIAMGIPYISLYDRHGILKAGESRL-GKVIKQKVVKTFGQKKAQGIDVVLKDSSYRYQNGITYPKKFC---VQLLSEEDGKADIISTTKRIAADYAXXXXXXXXXXXXXXXXSLKAI---ENIPDPELVVQFGNIYSLNGYLPWQTRLSEILNLKTHKKICYSQYYNLLARFSKCDQRFGK 1110
            +  D  +L KLP HM  VI E +    + DIA+L+VW +A+GI YIS+YD  GI K   SRL  +++KQ       Q++  G+D       +   N        C   V++LS EDGKADI+    R A D+     +++    D    +L ++      PDP+LV++FG + S  G+LPW  RL+EI++L +H  I Y  +++ L +++ C+QR GK
Sbjct:   87 WRADGRSLEKLPVHMGLVITEVEQEPSFSDIASLVVWCMAVGISYISVYDHQGIFKRNNSRLMDEILKQ-------QQELLGLDCSKYSPEFANSNDKDDQVLNCHLAVKVLSPEDGKADIV----RAAQDFCQLVAQKQKRPTDLDVDTLASLLSSNGCPDPDLVLKFGPVDSTLGFLPWHIRLTEIVSLPSHLNISYEDFFSALRQYAACEQRLGK 293
The following BLAST results are available for this feature:
BLAST of TCONS_00062385 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NGBR2.646e-3235.78Dehydrodolichyl diphosphate synthase complex subun... [more]
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