TCONS_00062419 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062419
Unique NameTCONS_00062419
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length750

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062419 ID=TCONS_00062419|Name=TCONS_00062419|organism=Clytia hemisphaerica|type=transcript|length=750bp
TGAATGTGTTTCGAAAGATCCATATTCTGAGAAAAGTCAATGCTTCTTCA
AGAAGCGGCAGCTATGTGCAGGCGGAGACTGAGGAGAGTTTATCAGCAGT
CAAGTTGATAGCCATCAACCCTAATGAAAATGACGAAGAAGATGCAGCTC
CTACAACTCCCATGATCAATAATCGTCCTTCTTCAGGTGGGGGAGAACGT
GAAGGACTGGAAGAAGCTGCCGCAGAAGGAgctatcgataaagtgaaaca
TTCCTCTATCTCAGCAATCGATACCATTCTCACCAATTTCACTGGAGTAG
GGACTGCAGATGATAAGGAAGTGTTTGAAGATGAATCTTTAAGTGCTGAC
GTCACCCTCCTACAAGCTTCAAGTGAAGGAAATATCACCCTGGTTAAGAG
CAGGATTGCTGCGCTACAGGAAGAATCTAAAAAGTTGACAAGTGATCTAG
ATAAAGTAAAGGCTTTGGTTTCCAAAGAGTTGGATCGTTTGGATGAGAAG
GATTTCTCGGCTCTTCATTTGGCATCGCGTTACAACAGGAAGAATGTTAT
AAAAGCGTTACTGGATGCAGGGGCGAACATTGATTTGGTTGGATCTGAAG
GGTTAACACCGTTACATCTGGCTACTAAATACGACATGACATCAGCTGCA
AAATTTCNtttctcgagattggctctttcattctttatgattatttacac
aaagatgcataactataaacccttgaatgtgacagaacccgattttcgaa
Run BLAST on NCBI

transcript from alignment at scaffold_364:252369..258341-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062419 ID=TCONS_00062419|Name=TCONS_00062419|organism=Clytia hemisphaerica|type=transcript|length=5973bp|location=Sequence derived from alignment at scaffold_364:252369..258341- (Clytia hemisphaerica)
TGAATGTGTTTCGAAAGATCCATATTCTGAGAAAAGTCAATGCTTCTTCA
AGAAGGTATTTTTTACATTAGATCAGCATAAATTTATTTGAGGCAGATTA
CTCAATTAATTTTGGAAATGCTTAATCAATAATCAAAGAGATAATTTACT
ATTTTTTGCTTATGGTCTGCCTAAAAAAAATTGAGATGCAAAACAGCAAG
AAATCGTCCTGCATCATATGGTCTTTCTACCTCGTTTCCTGCTTATTATT
AGCTTTTTTATGCTTACTGATAGCGCTAGATAATCTGTGGCGTCAATCAA
TAACGTAAATAAAGCCTGGAATACACGGGGATGAAGTTGATGGGATTTCA
CTTTACTTATCCCAGTTTGTTAAATTTAACCACCTAATTCTTTGATATCT
TGTTAGGATAGGCCTTAAAACTCAAAATTGATATGTCCTTTCAACATTAT
AAGGGCCTTTATAACTTTTTTATAGTTAGGGCGAATTGTTGTTCAAGGCT
CAGTTAACCGGTTTTTGAGAAACCAATCATTTCTCAAGTTACCAGTAATA
TTAAATATATCTTTTTAAACTCTTTAATTAAATTATATTCGTTTTTTATC
TTTGTGTAGCGGCAGCTATGTGCAGGCGGAGACTGAGGAGAGTTTATCAG
CAGTCAAGTTGATAGCCATCAACCCTAATGAAAATGACGAAGAAGATGCA
GCTCCTACAACTCCCATGATCAATAATCGTCCTTCTTCAGGTTCGTGAGA
TTCAACTCCTTTGGCTCCTAATTTTATTATCGTCAAAAAGCTTTAGAAAA
TTGCTTTTGAAATGCCTTTTTGGTTTTGGGATGCCGATCTAAGTGTCGGG
CTTTTGATTTCTTTTTGAAAGTTTCGTTATACGATTTTTTCACTCTACAC
ACAGGTGGGGGAGAACGTGAAGGACTGGAAGAAGCTGCCGCAGAAGGAGC
TATCGATAAAGTGAAACATTCCTCTATCTCAGCAATCGATACCATTCTCA
CCAATTTCACTGGAGTAGGGACTGCAGATGATAAGGAAGTGTTTGAAGAT
GAATCTTTAAGTGCTGACGTCACCCTCCTACAAGCTTCAAGTGAAGGAAA
TATCACCCTGGTTAAGAGCAGGATTGCTGCGCTACAGGAAGAATCTAAAA
AGTTGACAAGTGATCTAGATAAAGTAAAGGCTTTGGTTTCCAAAGAGTTG
GATCGTTTGGATGAGAAGGATTTCTCGGCTCTTCATTTGGCATCGCGTTA
CAACAGGAAGAATGTTATAAAAGCGTTACTGGATGCAGGGGCGAACATTG
ATTTGGTTGGATCTGAAGGGTTAACACCGTTACATCTGGCTACTAAGTAA
GAATCCTGCTATTTATATTGCTATTGCATGGTACCCCTTACTTTGCTGAA
AGAATATCAAAACTAATTTACAGCGGACTCCCGCTAATTTGAACTTCTAT
TTTCGAATATATTATTCGAGATAAATCTCAGTCTCAGTCAACTCAGAATA
GCTGGATTCAAACTCGAGATACGAAGCAAAATTTATGCCTTCCCTGATTT
TCGTTGTCAATAAAAGTAATTTTTCTGCTGTCGAACCATAATGTTTATAC
TCTGGACCTCTTTAAGCCGAAAGTCGTGCAATTCTCATCACATACCATTT
ATTCTATTTTTTAAATCTATTCTTTCTCTTCTCTTTTACCACCCAAAGGA
AAATAATAGGTAACATCGTTTTTTTTAATGCTTGCAACCCTTACAGTAAA
CAAAACATACGAAAAATCTTTGAAAAGAATTATTCTAGGAACCAGTTGTA
AATACTATATAAGTAAGTACTAAATCTAAGGGACCCGGCCTAAAAATAAC
CACAATGCAACAGTCTGGATTAAGGGGGCTGGATGTAAGTTTTAGAAAAC
GCAAAAACTGCTCCCATGTAATACCTGGTCCAACCACTGACCTTTATATA
AGTCTGGACCAAGCTTCTCAATCCCAGCCAAGCAAAATCTTTGATCGGAG
TTTTTTGAAAATTGGTACCCTAATGGCGGCTCTACTCGATAGCGGTGTAA
ATGCATCGAGAGCGCTAGGTCTACTTTTCCTCAAATTCTTTTGATGATGT
AGCGGCATTAGACGTTAATTTTTAACACTGCAATGGCTTCTCCTCGCGTA
CCAATTCCAAAAAAACTCCAATCAAAGATGGCAGATATTGCTTGGTCCAG
GATTATATAAAGGTCAGTGGGTCCAACAATTGTATTGATGCTACCCTGTG
GAAATCTAGGCAAAATGAGTGACGATAAAAGATTATGATGATGCTGAAAA
TGTTTCACATAAAGCAGTGTTTCACTTCTTGTTTTTTTGGACCTACCCCG
GTGGAGGTCCTATAAATTAACCTTTGTCCGTCCGTCCGTTAGTTACCAGC
TTTTCTCGAGATTGGCTCATTAGTTTTTTCTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAAAAAACGCATGTTTATCTATAAGA
ATCACTATTAATAAGCATACATCAATGTTCTTAGTCAAATTACTCAATTT
TTTTATGAGATAAATGTTTTTTCTGCTCATGAGGGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAGAAAAACTGGC
CAAATTCGATATTTTTTTATAAGCACATTATCAATTACTTAGGTATTGGC
TTTTCTCGAGATTGGCTCTTTCATTCTTTATGATTATTTACACAAAGATG
CATAACTATAAACCCTTGAATGTGACAGAACCCGATTTTCGAAAAAAAAT
GTTTTGGGGCAAATTTGGGCAAAAAAAACGGCTAAAAAACAGGTTTTTGG
ACTTTGTGAAAAATTGGATCATTAATTTTTTCTGATTTTTTGCACAAAAG
TAGGGTACCATCATAGGTATAAGATGGCTCAAGCAGATTTTGCAAAAAAA
TTTTGTTGGCTCAAAAAACGCATGTTTATCTATAAGAATCACTATTAATA
AACATACATCAATGTTCTTAGTCAAATTACTCAATTTTTTTATGAGATAG
ATGTTTTTTTTTCTCACGAGTGTTTAGACAGGAAATTTTGGTTGTTTGGC
GGGTTTTTATAGAAAAACTGGCCAAATTCGATATTCTTTTATAAGCACAT
TATCAATTACTTAGGTATTGGCTTTTCTCGAGATTGGCTCATTCATTCTT
TATGATTATTTACACAAAGATGCATAACTATAAACCCTTGAATGAGACAG
AACCCGATTTTCGAATAAAAATGTTTTGGGGCAAATTTGGGCAAAAAAAC
GGCTAAAAAACAGGGTTTTGGACTTTGTGAAAAAGTGGATCAATAATTTT
TTCTGATTTTTTGCACGAAAGTAGGGTACCATCATAGTTAAAAGATGGCT
TAAGCAGATTTTAGCAAAAAAAATTTGTTGGCTCAAAAAACGCATGTTTA
TCTATAAGAATCACTATTAATAAACATACATCAATGTTCTTAGTCAAATT
ACTCAATTTTTTTATGAGATAGATGTTTTTTTTTCTCACGAGTGTTTAGA
CAGGAAATTTTGGTTGTTTGGCGTGTTTTTATAGAAAAACTGGCCAAATT
CGATATTTTTTTATAAGCACATTATCAATTACTTAGGTATTAGATTGGTT
GGCTCTTTCATTTTCTACAATTTTTTGCATAAAGATACATAACTGTAAAT
CCTCGAATGTGACTCCGATTTTTTGAGAAAAAAATTTTGGGGAATATTTC
AGCTAAAAAAACGGCCATAAAAGGGTTTAGATTTAAATATTGGACCATTG
TTTTTTTCTGATTTTTTGTATGAAAGTGGATAAAAGATGGCTCAAGCAGA
CTTTTGTAAAAATGAATTTTTCAGCTCAAAAANAAAAATTTTGTTGGCTC
AAAAAACGCATGTTTATCTATAAGAATCACTATTAATAAGCATACATCAA
TGTTCTTAGTCAAGTTACTCAATTTTTTTATGAGAAAGATGTTTTTTCTG
CTCATGAGGACTTGCTTTTGAAGAATATGTGTGTTTAGACAGGAAATTTG
GGTTGCTTGACGTGTTTTTATAGAAAAACTGGCCAAATTCGATATTCNAA
AAAAAGCATCTTTATCAATAAGAATCACTATTAATAAACATACATCAATG
TTCTTAGCCAAATTACTCAATTATTTGGAGATGTTTTTTTTTGCTCACAA
AGTCTTGAATATGAAAGAACATTTCAAGAGCATGAAATTTTGGCTTCTAA
ACGTTTTTTTTTTATAAGAAACATACGACCAATTTTAATAGATCGTCACT
ATTTGTGTTTGGAATGATTGTTTAATGGTCACGTCACGTAGATATAAATT
ATAAACGTGTTAAATGCATAATCCAGGTAGGTTCATCAAAGTATCACTTG
TTTCATTTATACTAACTTTTTACCCTTTCAAGTTTTCCATTTATTTTATA
GATACGACATGACATCAGCTGCAAAATTTCNTTTCTCGAGATTGGCTCTT
TCATTCTTTATGATTATTTACACAAAGATGCATAACTATAAACCCTTGAA
TGTGACAGAACCCGATTTTCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039104XLOC_039104Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062419-exon-scaffold_364-1575043694:258287..258341TCONS_00062419-exon-scaffold_364-1575043694:258287..258341Clytia hemisphaericaexon
TCONS_00062419-exon-scaffold_364-1575043694:257602..257732TCONS_00062419-exon-scaffold_364-1575043694:257602..257732Clytia hemisphaericaexon
TCONS_00062419-exon-scaffold_364-1575043694:256996..257437TCONS_00062419-exon-scaffold_364-1575043694:256996..257437Clytia hemisphaericaexon
TCONS_00062419-exon-scaffold_364-1575043694:252369..252490TCONS_00062419-exon-scaffold_364-1575043694:252369..252490Clytia hemisphaericaexon
TCONS_00062419-exon-scaffold_364-1510915933:258287..258341TCONS_00062419-exon-scaffold_364-1510915933:258287..258341Clytia hemisphaericaexon
TCONS_00062419-exon-scaffold_364-1510915933:257602..257732TCONS_00062419-exon-scaffold_364-1510915933:257602..257732Clytia hemisphaericaexon
TCONS_00062419-exon-scaffold_364-1510915933:256996..257437TCONS_00062419-exon-scaffold_364-1510915933:256996..257437Clytia hemisphaericaexon
TCONS_00062419-exon-scaffold_364-1510915933:252369..252490TCONS_00062419-exon-scaffold_364-1510915933:252369..252490Clytia hemisphaericaexon
TCONS_00062419-exon-scaffold_364-1491911889:258287..258341TCONS_00062419-exon-scaffold_364-1491911889:258287..258341Clytia hemisphaericaexon
TCONS_00062419-exon-scaffold_364-1491911889:257602..257732TCONS_00062419-exon-scaffold_364-1491911889:257602..257732Clytia hemisphaericaexon
TCONS_00062419-exon-scaffold_364-1491911889:256996..257437TCONS_00062419-exon-scaffold_364-1491911889:256996..257437Clytia hemisphaericaexon
TCONS_00062419-exon-scaffold_364-1491911889:252369..252490TCONS_00062419-exon-scaffold_364-1491911889:252369..252490Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:252369..258341 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.731276	0.00658324	3.18995	0	0	0	0	5.47671e-05	13.2345	11.6619	5.69284e-08	1.86736	5.66751	1.47058	4.27562	4.24068	9.8578	8.93499	4.72524	9.15306	8.15084	5.92182	0.000108905	6.0533	0	0	0	1.95487	8.76562e-05	3.26156
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062419 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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