TCONS_00062432 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062432
Unique NameTCONS_00062432
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062432 ID=TCONS_00062432|Name=TCONS_00062432|organism=Clytia hemisphaerica|type=transcript|length=2571bp
TTCACGGAAAAGGAACTATCTAGTGGGTGCATCGTCATTTTTATTTAAAC
AGAATTACTTGAGTCAGAGTGACACACACTTTTAGTTCTAATCACTCAAC
AAAcgaaatgaaatttattttaccTTTCATTTTGGTTAGCTTTGAAGTGC
TCTCCGTCGTTTTTGGAAAGCCAATCAAAGGAAAGCATAACGGGAAGAAT
GCATTCgaagaaattgaatttgtcaatACGCATACCAAAGAGCAAATTGG
ATCGGaaaaagAGCTTTTCGAAGAAGACATTAACTTTGAAAATGACTCTG
AAATCGAAAGATTAGCTCAtcataaaatgacgtcaccagaGCGACAACGA
CGTGACGTCATCACTGGACCATATGCATGGCCAAATGGGAAGGCTCCTTA
CGTATTTGCTAATGATTACCCCTGGTACAGCAAATACTTGGTGAGGTCGT
CCATGgatgaaattcaaaaagtcagtTGTGTTCAATTTGTTGAAAGAACC
AATGAAAAAGATTACATCAAGATCTTTGATGACAAATTGTGCTATTCATC
CATTGGTAAACGGGGCTCGAATCAAACGTTATCTCTGGGAGACAATTGTC
TTTCAGACTCGATCATTCAACATGAATTATTTCACGCCCTTGGTTTTTTT
CATGAACAATCGAGGCTAGAAAGAGATTCATTTGTTACCGTGCACTGGGA
TAATATTATCAAAGgAAAAGAACACAATTTCCAGAAATACAAAATCGGTG
AAGCTCATCATTTGAATGAAGCCTATGACGAAAAATCCATTATGCATTAT
TCAAATTACATCTTTGCGATTGACAAGAATAAAATGACGATCTCATCGAA
AGCAAATCCGACGAAATTCCTCGGAGGATTTCAAATGACCGACACGGACG
TTCGACAGTTGAACAAATTTTACAACTGCCCATGTGCAGATCATATGTTC
GGCTGTGAGTTTATTACAAGCATGTGTGGACTGTTAAGGACTCAGCAGTA
CTGTCAGAAAAGTTGTGGCTTTTGCAGAAACTCGCCGAACCCTCCGACAA
GACCTTTACCGACTACTTTGACGATAACGACCATGCCTACAACTACAACG
AACACCCCTATGATAACAACGACCACTTCGACTACAAGAACAACCACCAC
TACTAAAACAACGACCACctcaaccacaacaacaacaaccactccaacta
caacaacgactaCCCCGACTACAACAACCACCACTAGAACAACCACCCCG
TTCACAACAACAAGGACCACTCCAACTGCTACAACCCTGACCACCCCAAT
CACACCAACAACTCTCCCTACTACCACAACGACTATCCctactacaacaa
cgaccactccaacGACATTAATGACCCCAAAAAGGTCATGTTTTGATGCC
CTCAAATGTTGTCCGGAACTAGCAGCTCACGGTTTATGCAAGATCAGTAA
ATATATTCAAGATGCTTGTGAAAACTCTTGCCACGAGGAATGTAttttaa
aaaccacaaaaacGTCTACTATCCTTAAAACTACTACAATTACTACGCCG
AAAACAGCAACGACCACCCCTTCTACAATAACGACCACCCCTTCTATAAT
AACGACCACCCctactacaacaacgaccactccaatcacaacaacgacca
ccccgactacaacaacgaccaccccgaCTACAACAACGACCAACCCTTTC
ATAACAACGATCATCCctactacaacaacgaccacccctactacaacaac
gaccactccaacTATAATAACGGCCACCCCTacgacaacaacgaccaccc
cgactacaacaacgaccactccaacTATAATAACGGCCACCCCTacgaca
acaacgaccaccccgactacaacaacaaccaccccgactacaacaacgac
cactccaacTATAATAACCGCCACCCCTacgacaacaacgaccaccccga
ctacaacaacgaccactccaacTACAACAACAAAGGCTTCTTGTGTGAAC
AAACATCCTAAATGTTGGCTTTGGTCCTACGTGAACACAGTATGTTTCCA
ATGGCAGGGTTGTTGTCACAATAGCCAATACGGTGCTTGGATGCGTGAAA
ATTGCGCTTGGGCTTGCGGTCTCTGTTCACCCTTTATCATTGGATAAAAG
ATAAGCCATACACGTAAATTATGTCACGCACTTGTTTTGAACAGTACGTT
TGGTACAgtgaaatatattttaagatGTTCAGTCGTGTACACAACcgtct
tttttatgaaaataaaatgagatTAATTATTTTAGggactttaaaggttt
tgtttttaaataagagtgttATCGTTTACTCATCAATATTAATTtccaag
ctttttcacattgaattgacacagatgtggagcaagaacattttttgctt
aactaagcataataaaacaatagggaggacactgtcctgatatgaaatat
gtgtctgatatgaaacggggacatttatgtaaaaataaaacctttaaata
gtATCAGGAGAATTCTTTGTTTGTCTTATATGTATAtcattcttataaga
aaaaataattctttacaACGA
Run BLAST on NCBI

transcript from alignment at scaffold_364:306967..311824-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062432 ID=TCONS_00062432|Name=TCONS_00062432|organism=Clytia hemisphaerica|type=transcript|length=4858bp|location=Sequence derived from alignment at scaffold_364:306967..311824- (Clytia hemisphaerica)
TTCACGGAAAAGGAACTATCTAGTGGGTGCATCGTCATTTTTATTTAAAC
AGAATTACTTGAGTCAGAGTGACACACACTTTTAGTTCTAATCACTCAAC
AAACGAAATGAAATTTATTTTACCTTTCATTTTGGTTAGCTTTGAAGGTA
GGTCTTACATTTCACTTTCTCGGTATCAACTGCAATATTGGTCACGATTT
AGAGCCAAAGAATAATTACAAAAGTCAATGTTCCGGATACATGAATCAGC
CTAATCAGCAAAAAATGAATTATTTTCAGGGCTTTTACTTGTTTTTGATA
GGCTGGCGAATAAAAATTAACTCTGGTGAATTCTAGATTCTGGGCCGGCA
AATTCTCCGCAAACTCAGTGTATTGTTTAAACTATGTGAGTCTAAGACGA
ATCACTAACTAAGAAAAAAGCCCAAAGCCGAAAAAAATTCGCAAACGGAT
TTTTTGCCGAAAAGAGTTTACACTCGGTAGAGTTGCCAGTCTTCTTCGAA
ACTCTCCCGCCGATTTTTTCCCGTTTACCGCCATAACGCTATACCGCCAT
ATATTCCCGCAAGTTTACTATCACTGTAACGGACGATAACATCGTCTATG
TATTGTTTAGCGTGAGTATGGTCTTTGGGCTGCGAACCGAATTTTTAGAC
CAGCGAATTATAATTTTTTTCATGCTTTGGATCGACAAAAATCGCCTTTC
GACGGCCTTAATGAAAATCCCTGTTTTATTTCCCTCCCGTTTAACTTTTT
AGTGCTCTCCGTCGTTTTTGGAAAGCCAATCAAAGGAAAGCATAACGGGA
AGAATGCATTCGAAGAAATTGAATTTGTCAATACGCATACCAAAGAGCAA
ATTGGATCGGGTCAGTATTATGTATTTTAAACGTTTTCTTCACTGGTAAC
ACATCTAAAAGGGGTTTGACTTTTGTGACGGAGTGTGTTTCAGTTCGATA
TTTATTGTGGAGAAATAAAAAAATCTCCGGCTGTCTTTCAGATTACAGAT
AGATTGATAGGTATATTCAACCAAAAAATTTATTTTTGTTTAGAAAAAGA
GCTTTTCGAAGAAGACATTAACTTTGAAAATGACTCTGAAATCGAAAGAT
TAGCTCATCATAAAATGACGTCACCAGAGCGACAACGACGTGACGTCATC
ACTGGACCATATGCATGGCCAAATGGGAAGGCTCCTTACGTATTTGCTAA
TGATTACCGTAAGTCTTTTTAAAACGAGGCTATGGAACATGTCTTATGAT
ACAAAACACACGTGCCATACTAATTGACCCAATTACTCTGTAAAAATCTG
ACTAGACTATTCGGGCTTGTAGCCTGCGGATTAAACCAACACGAAATTCA
TATCGAGGTTTTTTCATATTTTTAAGTTACGTAACATCTGTAATTTTGGA
AGCAAACGAATCTATGGAGTCAATTCTTTACCCAAATCAAATGTTTGTTT
CCATAATGACTGACTTAACAAAACTTGAAAGCTCTATAATCTCTATACTT
GATTGACGAATCTTACTCCCCATTCATTCCCCATTCATTCCCCATTTTCC
CTCATTTTCAATGGTTTTAATTTTGTTTAGCCTGGTACAGCAAATACTTG
GTGAGGTCGTCCATGGATGAAATTCAAAAAGTCAGTTGTGTTCAATTTGT
TGAAAGAACCAATGAAAAAGATTACATCAAGATCTTTGATGACAAATTGT
AATAAATGCTTTTATGTACTTTAAGCTCGATTTTACTATATTTTTTGCAA
GGCCCGGCTGTTTTCTTTATTTTCCAGCTCCACGTAACATATGTTTTTGC
GATTCATGTTTAATTTTTTGTAACCTTTAAGATGATAGTATAGGTAGCCG
TCCCCCACAAATTAATAGAAATACACAAATCCAATTGCGAGCACAAAAAA
TGACTTGGGACTTTGTGTTAGGTACTAATAATACGAGCTTTAAAGTCTTG
AAGGGTTAAAATGAAAACCTTTGCATTGAATTTTAAACAATGTCTTTTTT
CCAGGTGCTATTCATCCATTGGTAAACGGGGCTCGAATCAAACGTTATCT
CTGGGAGACAATTGTCTTTCAGACTCGATCATTCAACATGAATTATTTCA
CGCCCTTGGTTTTTTTCATGAACAATCGAGGCTAGAAAGAGATTCATTTG
TTACCGTGCACTGGGATAATATTATCAAAGGTAAGAAGGGGTGGTGAGAA
ATGCTTTGGTTTTAATTTCTAGCCTAAAAAAATTGAACTCACGCAAATTT
GAAATTCGCTGAAGACAATTCCTGATTACTTGGAGCTGATTGGTCTTAAA
TCTTTTTTTTGTTTCTAGGAAAAGAACACAATTTCCAGAAATACAAAATC
GGTGAAGCTCATCATTTGAATGAAGCCTATGACGAAAAATCCATTATGCA
TTATTCAAAGTGAGTAAACTCATTGAAATGTCTTTTTGATTATTTTTCTA
CTTACCCTTTACGGTGACAGAAAATTTTCCCTCGGAAATATCCCCAGGAG
ATTTGCCCCCCGGAACATTCCACGTTCAAATGTTTTAAAAAAATATCGGA
TATAATTATGCACAATCCTTTAAGAAAATCTCATAATCTCAATATGCAGG
TCAAATTTTATGCACTGGAAAAAATCCCAGGGTGGGACCCGATTCGTTGT
TCACACGTGTGTGAAAAGGTAATTAACACCCTATGTGATTACACCTCGTT
GAATCAATTATCAAACTAAACGCTCTAACTAATCTGCAATCACAGTCTGA
CTTAATTCTTCTTGAAATTTGAGGTGTTTTAGTCTAATTCCTAATTTAAC
ATGGTGTAAACACTAAAGGTGTAATTTACTATTTCACACTCGTGTGAAAA
ACGAACCGAGTCCCATCCTAGATAATTGATTTTTACACAAGTGTGATTTT
TAACAATTTCTTCGTGTGAGGGCAACTTTCCGGGGAATTTTCTCTTTACC
TTCCTATCCACTTTCCGTTTCCTGGGAAAATTTTCCGATCTTTGCTCTCT
CTTCAACAGATAAAGACCAAGCCTCCGGTTAGTTTGATAATTGTTTCATT
TTAGCCAACTTGAATGTTATTCTCTCACATGTTTTACCTTAGTTACATCT
TTGCGATTGACAAGAATAAAATGACGATCTCATCGAAAGCAAATCCGACG
AAATTCCTCGGAGGATTTCAAATGACCGACACGGACGTTCGACAGTTGAA
CAAATTTTACAACTGCCCATGTGCAGATCATATGTTCGGCTGTGAGTTTA
TTACAAGCATGTGTGGACTGTTAAGGACTCAGCAGTACTGTCAGAAAAGT
TGTGGCTTTTGCAGAAACTCGCCGAACCCTCCGACAAGACCTTTACCGAC
TACTTTGACGATAACGACCATGCCTACAACTACAACGAACACCCCTATGA
TAACAACGACCACTTCGACTACAAGAACAACCACCACTACTAAAACAACG
ACCACCTCAACCACAACAACAACAACCACTCCAACTACAACAACGACTAC
CCCGACTACAACAACCACCACTAGAACAACCACCCCGTTCACAACAACAA
GGACCACTCCAACTGCTACAACCCTGACCACCCCAATCACACCAACAACT
CTCCCTACTACCACAACGACTATCCCTACTACAACAACGACCACTCCAAC
GACATTAATGACCCCAAAAAGGTCATGTTTTGATGCCCTCAAATGTTGTC
CGGAACTAGCAGCTCACGGTTTATGCAAGATCAGTAAATATATTCAAGAT
GCTTGTGAAAACTCTTGCCACGAGGAATGTATTTTAAAAACCACAAAAAC
GTCTACTATCCTTAAAACTACTACAATTACTACGCCGAAAACAGCAACGA
CCACCCCTTCTACAATAACGACCACCCCTTCTATAATAACGACCACCCCT
ACTACAACAACGACCACTCCAATCACAACAACGACCACCCCGACTACAAC
AACGACCACCCCGACTACAACAACGACCAACCCTTTCATAACAACGATCA
TCCCTACTACAACAACGACCACCCCTACTACAACAACGACCACTCCAACT
ATAATAACGGCCACCCCTACGACAACAACGACCACCCCGACTACAACAAC
GACCACTCCAACTATAATAACGGCCACCCCTACGACAACAACGACCACCC
CGACTACAACAACAACCACCCCGACTACAACAACGACCACTCCAACTATA
ATAACCGCCACCCCTACGACAACAACGACCACCCCGACTACAACAACGAC
CACTCCAACTACAACAACAAAGGCTTCTTGTGTGAACAAACATCCTAAAT
GTTGGCTTTGGTCCTACGTGAACACAGTATGTTTCCAATGGCAGGGTTGT
TGTCACAATAGCCAATACGGTGCTTGGATGCGTGAAAATTGCGCTTGGGC
TTGCGGTCTCTGTTCACCCTTTATCATTGGATAAAAGATAAGCCATACAC
GTAAATTATGTCACGCACTTGTTTTGAACAGTACGTTTGGTACAGTGAAA
TATATTTTAAGATGTTCAGTCGTGTACACAACCGTCTTTTTTATGAAAAT
AAAATGAGATTAATTATTTTAGGGACTTTAAAGGTTTTGTTTTTAAATAA
GAGTGTTATCGTTTACTCATCAATATTAATTTCCAAGCTTTTTCACATTG
AATTGACACAGATGTGGAGCAAGAACATTTTTTGCTTAACTAAGCATAAT
AAAACAATAGGGAGGACACTGTCCTGATATGAAATATGTGTCTGATATGA
AACGGGGACATTTATGTAAAAATAAAACCTTTAAATAGTATCAGGAGAAT
TCTTTGTTTGTCTTATATGTATATCATTCTTATAAGAAAAAATAATTCTT
TACAACGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039105XLOC_039105Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062432-exon-scaffold_364-1575043694:311678..311824TCONS_00062432-exon-scaffold_364-1575043694:311678..311824Clytia hemisphaericaexon
TCONS_00062432-exon-scaffold_364-1575043694:310965..311072TCONS_00062432-exon-scaffold_364-1575043694:310965..311072Clytia hemisphaericaexon
TCONS_00062432-exon-scaffold_364-1575043694:310617..310781TCONS_00062432-exon-scaffold_364-1575043694:310617..310781Clytia hemisphaericaexon
TCONS_00062432-exon-scaffold_364-1575043694:310127..310244TCONS_00062432-exon-scaffold_364-1575043694:310127..310244Clytia hemisphaericaexon
TCONS_00062432-exon-scaffold_364-1575043694:309645..309820TCONS_00062432-exon-scaffold_364-1575043694:309645..309820Clytia hemisphaericaexon
TCONS_00062432-exon-scaffold_364-1575043694:309416..309506TCONS_00062432-exon-scaffold_364-1575043694:309416..309506Clytia hemisphaericaexon
TCONS_00062432-exon-scaffold_364-1575043694:306967..308732TCONS_00062432-exon-scaffold_364-1575043694:306967..308732Clytia hemisphaericaexon
TCONS_00062432-exon-scaffold_364-1510915933:311678..311824TCONS_00062432-exon-scaffold_364-1510915933:311678..311824Clytia hemisphaericaexon
TCONS_00062432-exon-scaffold_364-1510915933:310965..311072TCONS_00062432-exon-scaffold_364-1510915933:310965..311072Clytia hemisphaericaexon
TCONS_00062432-exon-scaffold_364-1510915933:310617..310781TCONS_00062432-exon-scaffold_364-1510915933:310617..310781Clytia hemisphaericaexon
TCONS_00062432-exon-scaffold_364-1510915933:310127..310244TCONS_00062432-exon-scaffold_364-1510915933:310127..310244Clytia hemisphaericaexon
TCONS_00062432-exon-scaffold_364-1510915933:309645..309820TCONS_00062432-exon-scaffold_364-1510915933:309645..309820Clytia hemisphaericaexon
TCONS_00062432-exon-scaffold_364-1510915933:309416..309506TCONS_00062432-exon-scaffold_364-1510915933:309416..309506Clytia hemisphaericaexon
TCONS_00062432-exon-scaffold_364-1510915933:306967..308732TCONS_00062432-exon-scaffold_364-1510915933:306967..308732Clytia hemisphaericaexon
TCONS_00062432-exon-scaffold_364-1491911889:311678..311824TCONS_00062432-exon-scaffold_364-1491911889:311678..311824Clytia hemisphaericaexon
TCONS_00062432-exon-scaffold_364-1491911889:310965..311072TCONS_00062432-exon-scaffold_364-1491911889:310965..311072Clytia hemisphaericaexon
TCONS_00062432-exon-scaffold_364-1491911889:310617..310781TCONS_00062432-exon-scaffold_364-1491911889:310617..310781Clytia hemisphaericaexon
TCONS_00062432-exon-scaffold_364-1491911889:310127..310244TCONS_00062432-exon-scaffold_364-1491911889:310127..310244Clytia hemisphaericaexon
TCONS_00062432-exon-scaffold_364-1491911889:309645..309820TCONS_00062432-exon-scaffold_364-1491911889:309645..309820Clytia hemisphaericaexon
TCONS_00062432-exon-scaffold_364-1491911889:309416..309506TCONS_00062432-exon-scaffold_364-1491911889:309416..309506Clytia hemisphaericaexon
TCONS_00062432-exon-scaffold_364-1491911889:306967..308732TCONS_00062432-exon-scaffold_364-1491911889:306967..308732Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:306967..311824 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.39607	1.03318	1.14299	0.737165	0.798257	1.36247	1.29888	1.7989	0.715255	1.1226	0.911081	0.71247	32.5796	30.9454	11.5913	14.1477	0.718378	0.833844	0.671395	0.682956	1.35344	1.42283	1.80136	1.26601	2.57526	2.01918	1.54452	1.64078	1.36017	1.7999
Blast
[Close]
BLAST of TCONS_00062432 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 4.148e-35
Identity = 86/260 (33.08%), Postives = 142/260 (54.62%), Query Frame = 3 
Query:  249 GSEKELFEEDIN-------FENDSEIERLAHHKMTSPERQRRDVITGPYAWPNGKAPYVFANDYPWYSKYLVRSSMDEIQKVSCVQFVERTNEKDYIKIFDDKLCYSSIG-KRGSNQTLSLGDNCLSDSIIQHELFHALGFFHEQSRLERDSFVTVHWDNIIKGKEHNFQKYKIGEAHHLNEAYDEKSIMHYSNYIFAIDKNKMTISSKANPTKFLGGFQM--TDTDVRQLNKFYNCPCA-DHMFGCEF-ITSMCGLLRT 992
            G ++++F  DIN       FE D  ++R          + R  +I   Y WP+   PYV  +     +K ++ ++ +  +  +C+ F     E +YI +F    C+SS+G +R   Q LS+G NC   + +QHE  HALGF+HEQSR +RD +V + WD I+ G+EHNF  Y    +  LN  YD  S+MHYS   F  +  + TI ++ +  + + G +M  +D+D+ +LN+ YNC  +   M  C F + ++CG++++
Sbjct:   32 GMDQDIF--DINEGLGLDLFEGDIRLDR---------AQIRNSIIGEKYRWPH-TIPYVLEDSLEMNAKGVILNAFERYRLKTCIDFKPWAGETNYISVFKGSGCWSSVGNRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQ-NGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLYNCSSSLSFMDSCSFELENVCGMIQS 278
The following BLAST results are available for this feature:
BLAST of TCONS_00062432 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEP1B4.148e-3533.08Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=... [more]
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