TCONS_00062450 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062450
Unique NameTCONS_00062450
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length546

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062450 ID=TCONS_00062450|Name=TCONS_00062450|organism=Clytia hemisphaerica|type=transcript|length=546bp
CAACTTTATTTAATACTGTTAAGATTTGTAATCATTGCACCTCGTTTTTG
GAGTTTGATTTTAAGTAGTACACACATTgttcaaaagaaaagagaatttG
GAGGAAATACACCTTTCTCGTAATTATAAAGTTATTAACTCACAATGACT
CAGGAAAATAGAGAACCCTCCTACCATTTGTCTGGTCTGTCTTCTGTCCT
TCTTCTGTCGTCTAGAATGTCTCCTTGCCTCAACTCAAGTCAATTCGTTT
GCACCGTTTAGTTTTCCTTatgaacttttataaaaaactcTACAACTCGA
TTCTCTACAACTCgattctctataactcgaatgtttccCGAACTCGAACA
ATTTTTCTGATCCCTTGCTACAATTCGTACAATCTGAACAATTTAAGCCT
AACGGGACACCATAGAACTTAATTCCCGTAGAAATCAGTTAAGCCCAATA
CGGTATAGCCTATCTCCTATGTGTGTAGAAATTGAGGTCATGTATTTCTA
CATTAGCTGCACGGCCGGCGTGGTTTTTATACACTGCTAGAATCAG
Run BLAST on NCBI

transcript from alignment at scaffold_364:156603..157148

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062450 ID=TCONS_00062450|Name=TCONS_00062450|organism=Clytia hemisphaerica|type=transcript|length=546bp|location=Sequence derived from alignment at scaffold_364:156603..157148 (Clytia hemisphaerica)
CTGATTCTAGCAGTGTATAAAAACCACGCCGGCCGTGCAGCTAATGTAGA
AATACATGACCTCAATTTCTACACACATAGGAGATAGGCTATACCGTATT
GGGCTTAACTGATTTCTACGGGAATTAAGTTCTATGGTGTCCCGTTAGGC
TTAAATTGTTCAGATTGTACGAATTGTAGCAAGGGATCAGAAAAATTGTT
CGAGTTCGggaaacattcgagttatagagaatcGAGTTGTAGAGAATCGA
GTTGTAgagttttttataaaagttcatAAGGAAAACTAAACGGTGCAAAC
GAATTGACTTGAGTTGAGGCAAGGAGACATTCTAGACGACAGAAGAAGGA
CAGAAGACAGACCAGACAAATGGTAGGAGGGTTCTCTATTTTCCTGAGTC
ATTGTGAGTTAATAACTTTATAATTACGAGAAAGGTGTATTTCCTCCaaa
ttctcttttcttttgaacAATGTGTGTACTACTTAAAATCAAACTCCAAA
AACGAGGTGCAATGATTACAAATCTTAACAGTATTAAATAAAGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039117XLOC_039117Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062450-exon-scaffold_364-1491911889:156603..157148TCONS_00062450-exon-scaffold_364-1491911889:156603..157148Clytia hemisphaericaexon
TCONS_00062450-exon-scaffold_364-1510915933:156603..157148TCONS_00062450-exon-scaffold_364-1510915933:156603..157148Clytia hemisphaericaexon
TCONS_00062450-exon-scaffold_364-1575043694:156603..157148TCONS_00062450-exon-scaffold_364-1575043694:156603..157148Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:156603..157148 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.21055	0	0.119198	0	0	0	0.135348	0.253422	0.177427	0.329658	0.319974	0.420676	1.89041	1.30881	0.657566	0.962276	0.474178	0.810029	0.33573	0.351317	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062450 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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