TCONS_00062490 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062490
Unique NameTCONS_00062490
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length471

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062490 ID=TCONS_00062490|Name=TCONS_00062490|organism=Clytia hemisphaerica|type=transcript|length=471bp
CATCAAACCAGTCAGGTTTCATaagttaaagtaaaacatttcacaaaaat
tgataaattatccaaaaatcaacaaaaacatgttgcGCTAAAGTTACGTA
ATATAGCAAACTTTGCGGTAATCTTGCaataacatcaaatttgggtgaaa
acagCCACATAAGTGTGACAAAATGTTCATTGAAATTCCAGCATGACTCT
CTGTAGACATGGAAACTTTTCTAgtgcatatttttattcacatagacttg
aattgacaatgagcTGGCTTGATCGAAGGCGGCACCTTTGCTTCGGTTAC
CGCCTAGGCGGTTATAAATGGCTGGTGTCGTGTCTCCAGAAGTTAggtcc
agttcattataatgcacatttctatctctgttacatcatgttgtgcttgg
aaatatcttAGTTACATTTAAATCCACTACAAAACATTATGTGAGCCACC
AAAAGCACACTGTCTATtatg
Run BLAST on NCBI

transcript from alignment at scaffold_365:171617..172087

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062490 ID=TCONS_00062490|Name=TCONS_00062490|organism=Clytia hemisphaerica|type=transcript|length=471bp|location=Sequence derived from alignment at scaffold_365:171617..172087 (Clytia hemisphaerica)
cataATAGACAGTGTGCTTTTGGTGGCTCACATAATGTTTTGTAGTGGAT
TTAAATGTAACTaagatatttccaagcacaacatgatgtaacagagatag
aaatgtgcattataatgaactggaccTAACTTCTGGAGACACGACACCAG
CCATTTATAACCGCCTAGGCGGTAACCGAAGCAAAGGTGCCGCCTTCGAT
CAAGCCAgctcattgtcaattcaagtctatgtgaataaaaatatgcacTA
GAAAAGTTTCCATGTCTACAGAGAGTCATGCTGGAATTTCAATGAACATT
TTGTCACACTTATGTGGctgttttcacccaaatttgatgttattGCAAGA
TTACCGCAAAGTTTGCTATATTACGTAACTTTAGCgcaacatgtttttgt
tgatttttggataatttatcaatttttgtgaaatgttttactttaacttA
TGAAACCTGACTGGTTTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039155XLOC_039155Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062490-exon-scaffold_365-1491911889:171617..172087TCONS_00062490-exon-scaffold_365-1491911889:171617..172087Clytia hemisphaericaexon
TCONS_00062490-exon-scaffold_365-1510915933:171617..172087TCONS_00062490-exon-scaffold_365-1510915933:171617..172087Clytia hemisphaericaexon
TCONS_00062490-exon-scaffold_365-1575043694:171617..172087TCONS_00062490-exon-scaffold_365-1575043694:171617..172087Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_365supercontigscaffold_365:171617..172087 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.28009	5.95521	4.56582	4.66281	40.059	35.0826	40.6879	41.1797	12.7344	29.6835	27.6043	17.0899	24.9421	19.3863	14.7604	23.502	10.3858	14.7843	16.3974	30.5714	18.4337	14.1319	16.8231	14.1002	17.9201	21.7984	38.7333	31.4792	55.5707	36.6681
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062490 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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