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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062517 ID=TCONS_00062517|Name=TCONS_00062517|organism=Clytia hemisphaerica|type=transcript|length=1264bp
cgagcctagaaatgttctaactttcaccattttgtgagtaatttCGTTAA
TTTTCcgaagaaatcgggtgtttcagagtacgcaaagccttaaatgttct
taacttgttcttaatattttcccctatgttcttatatagcttgttcttat
aaaaaaaggcgtGTATCAAGAAAGCGTGATAagaaaatgtttacaaaata
tACATTATAATTGATTctcaatttgttttcaaaacttcCTTTTATAATTT
CGACTAAATTCAGACTCAGAATAATTCAGCCGTATTCGACTCATGAAGGA
ACCTTTTTATCCGATAGCGATAAGCTGTGATGGGTAGGCGTGTATAAGGC
TTTTTCTGCGCGCGAGAAGGCGCAAAATATTCCATCAATCTAAATCATTT
GATATTACTATTCTGCTCCTTAATAATATGTAATAATACTTCTCTCGCCA
AATTAAAAAGGAATACAAAATCGTACCCACCCCATTCTCTCCATTTACAG
TTTTGTTAAAGTGTTCAAATTTATTCTGCCACGATTGGCTTTAAGTCTTT
ATTCTAATGATGGCTTTCTTGTGGCCACGTATTGTaacaaaattcaataa
attgaaaactttgaaagagTCTTGAGGTAATAAAATTGAGCGTTGAATCC
AAAAAGGtagaatttattcaaaaatctTCTAACGGGATCCAATTCAACCA
TCTGAGAAACTCAGGGAATGATACAATCCCATTTTTATCTTTATCCATTT
CCTTTAAAGCTCCTTCCAAATGAACCTCTTGTCCACCCATTTCCAAAAAC
AGCTTCTTAAATTCTTCAGGATCTAAAGCTTGACTTCTATCTTTATCATA
ACGATTGAAAAAATCAACAGCTTTGACTAGCAAATTGTATCTGCTTTTAT
CTGTAATATTTTGTAGCTTTTCACCACTTTTAAGCCAAGAAGTAAATTCA
TGGAAAGACACTTCACCATTACCATCTTTGTCCAGGAGAAGAGCGTAAGC
CTCTGATTGCTGGTCATCAAATCCTAAATCTTCTTTGAAAAGCACTGCAA
GCTCTGACTGACTCAACTGTCCACTTTTATCTTCATCGTACTTGCAAAAC
AAGCTTTTTAATGCTACTTCTGGTGTGTTATCCGAAAAGAGTGCTCTGAC
TCCAAGATTCGCCATTGTTGAAAGGTTTTATATAGTGGTTCTGGTAGTAG
GTGTTAAGTTGGAATAACTTCCCTCGTTATCATTCATCACTATTTAGTTT
ACTTTGAATTAGGg Run BLAST on NCBI protein sequence of TCONS_00062517-protein >TCONS_00062517-protein ID=TCONS_00062517-protein|Name=TCONS_00062517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MANLGVRALFSDNTPEVALKSLFCKYDEDKSGQLSQSELAVLFKEDLGFD
DQQSEAYALLLDKDGNGEVSFHEFTSWLKSGEKLQNITDKSRYNLLVKAV
DFFNRYDKDRSQALDPEEFKKLFLEMGGQEVHLEGALKEMDKDKNGIVSF
PEFLRWLNWIPLEDF Run BLAST on NCBI transcript from alignment at scaffold_367:143712..144975 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062517 ID=TCONS_00062517|Name=TCONS_00062517|organism=Clytia hemisphaerica|type=transcript|length=1264bp|location=Sequence derived from alignment at scaffold_367:143712..144975 (Clytia hemisphaerica)
cCCTAATTCAAAGTAAACTAAATAGTGATGAATGATAACGAGGGAAGTTA
TTCCAACTTAACACCTACTACCAGAACCACTATATAAAACCTTTCAACAA
TGGCGAATCTTGGAGTCAGAGCACTCTTTTCGGATAACACACCAGAAGTA
GCATTAAAAAGCTTGTTTTGCAAGTACGATGAAGATAAAAGTGGACAGTT
GAGTCAGTCAGAGCTTGCAGTGCTTTTCAAAGAAGATTTAGGATTTGATG
ACCAGCAATCAGAGGCTTACGCTCTTCTCCTGGACAAAGATGGTAATGGT
GAAGTGTCTTTCCATGAATTTACTTCTTGGCTTAAAAGTGGTGAAAAGCT
ACAAAATATTACAGATAAAAGCAGATACAATTTGCTAGTCAAAGCTGTTG
ATTTTTTCAATCGTTATGATAAAGATAGAAGTCAAGCTTTAGATCCTGAA
GAATTTAAGAAGCTGTTTTTGGAAATGGGTGGACAAGAGGTTCATTTGGA
AGGAGCTTTAAAGGAAATGGATAAAGATAAAAATGGGATTGTATCATTCC
CTGAGTTTCTCAGATGGTTGAATTGGATCCCGTTAGAagatttttgaata
aattctaCCTTTTTGGATTCAACGCTCAATTTTATTACCTCAAGActctt
tcaaagttttcaatttattgaattttgttACAATACGTGGCCACAAGAAA
GCCATCATTAGAATAAAGACTTAAAGCCAATCGTGGCAGAATAAATTTGA
ACACTTTAACAAAACTGTAAATGGAGAGAATGGGGTGGGTACGATTTTGT
ATTCCTTTTTAATTTGGCGAGAGAAGTATTATTACATATTATTAAGGAGC
AGAATAGTAATATCAAATGATTTAGATTGATGGAATATTTTGCGCCTTCT
CGCGCGCAGAAAAAGCCTTATACACGCCTACCCATCACAGCTTATCGCTA
TCGGATAAAAAGGTTCCTTCATGAGTCGAATACGGCTGAATTATTCTGAG
TCTGAATTTAGTCGAAATTATAAAAGgaagttttgaaaacaaattgagAA
TCAATTATAATGTatattttgtaaacattttctTATCACGCTTTCTTGAT
ACacgcctttttttataagaacaagctatataagaacataggggaaaata
ttaagaacaagttaagaacatttaaggctttgcgtactctgaaacacccg
atttcttcgGAAAATTAACGaaattactcacaaaatggtgaaagttagaa
catttctaggctcg Coding sequence (CDS) from alignment at scaffold_367:143712..144975 >TCONS_00062517 ID=TCONS_00062517|Name=TCONS_00062517|organism=Clytia hemisphaerica|type=CDS|length=498bp|location=Sequence derived from alignment at scaffold_367:143712..144975 (Clytia hemisphaerica)
ATGGCGAATCTTGGAGTCAGAGCACTCTTTTCGGATAACACACCAGAAGT
AGCATTAAAAAGCTTGTTTTGCAAGTACGATGAAGATAAAAGTGGACAGT
TGAGTCAGTCAGAGCTTGCAGTGCTTTTCAAAGAAGATTTAGGATTTGAT
GACCAGCAATCAGAGGCTTACGCTCTTCTCCTGGACAAAGATGGTAATGG
TGAAGTGTCTTTCCATGAATTTACTTCTTGGCTTAAAAGTGGTGAAAAGC
TACAAAATATTACAGATAAAAGCAGATACAATTTGCTAGTCAAAGCTGTT
GATTTTTTCAATCGTTATGATAAAGATAGAAGTCAAGCTTTAGATCCTGA
AGAATTTAAGAAGCTGTTTTTGGAAATGGGTGGACAAGAGGTTCATTTGG
AAGGAGCTTTAAAGGAAATGGATAAAGATAAAAATGGGATTGTATCATTC
CCTGAGTTTCTCAGATGGTTGAATTGGATCCCGTTAGAagatttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062517-exon-scaffold_367-1491911889:143712..144975 | TCONS_00062517-exon-scaffold_367-1491911889:143712..144975 | Clytia hemisphaerica | exon |
| TCONS_00062517-exon-scaffold_367-1510915933:143712..144975 | TCONS_00062517-exon-scaffold_367-1510915933:143712..144975 | Clytia hemisphaerica | exon |
| TCONS_00062517-exon-scaffold_367-1575043694:143712..144975 | TCONS_00062517-exon-scaffold_367-1575043694:143712..144975 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_367 | supercontig | scaffold_367:143712..144975 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005509 |
calcium ion binding |
Blast
The following BLAST results are available for this feature:
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