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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062552 ID=TCONS_00062552|Name=TCONS_00062552|organism=Clytia hemisphaerica|type=transcript|length=722bp
CagacaagaaataaaaagcTTATCTTCATGATTCATATGAATCTTGTCAT
TCATAGAGAAAAAAACGTCACTCGACGAAAACAACccgaaaagaaaaatc
tttaaaattgtgtgtgactggttgaaaaaatcaaattttgtttttgtgaa
tttGAAAGAGGAAGGTTTTTATTACtgaagaaatttgagaaaagatGTGA
TGAAAGTTCCTGTTAATGACTTCACTACTTGGGATACCATTTTGTCTAAT
gctaaataataagaagatatGGGCAATATTGTACATGCATCTTTCGCGTT
GAAGTATGCTGGTTCTGAAGATGACAACCATTCGTTATCGACAATCGGAC
GAGAATATAAAGATGATGACAGAGTACCGTTGCACACTTATCTCGATCTT
GGTCTCGATGGATTAATAAGAGAGACAAATTTCACTCGTGAAGAAATACA
GAGAATGTATCGTGGCTTCAAGCAGgaaTGCCCAAGAGGTCTTCTGGACG
AGGAGACATTTCTGGCCATTTTGAACATGCTTTTCCCGGGAGGTGATCCA
ACGTTATATTGTAGTCGAATATTCAACACTTTCGACCGAAGAAAGACTGG
AAAGCTAACTTTTGAGGTAAGCCACCGTCATTACGTATATACAGTgggcg
ctctctaattcgacgttctactattcgataagctcccgttttcgatcaaa
ttgaaagtcaccATCAAATTTC Run BLAST on NCBI transcript from alignment at scaffold_369:94993..101842+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062552 ID=TCONS_00062552|Name=TCONS_00062552|organism=Clytia hemisphaerica|type=transcript|length=6850bp|location=Sequence derived from alignment at scaffold_369:94993..101842+ (Clytia hemisphaerica)
CagacaagaaataaaaagcTTATCTTCATGATTCATATGAATCTTGTCAT
TCATAGAGAAAAAAACGTCACTCGACGAAAACAACccgaaaagaaaaatc
tttaaaattgtgtgtgactggttgaaaaaatcaaattttgtttttgtgaa
tttGAAAGAGGAAGGTTTTTATTACtgaagaaatttgagaaaagatGTGA
TGAAAGTTCCTGTTAATGACTTCACTACTTGGGATACCATTTTGTCTAAT
gctaaataataagaagatatGGGCAATATTGTACATGCATGTAAGCCATA
TTTCTTTAACCACCTGTTTTGTTGAAAACCTTGTATTTTTTATCTTCACA
GAAGTATACTACAGTAATTGTTCatcattcaaaacaaaaaattgacaTGG
CGCGAAGCGAGGATGCGAGAATGATCTtgattgatcaaattgccggcgCA
AAACTGTAGTCTACTTTGATTTACCTTCCAGAAGCAGCCTGTGgagagat
ttttaaaaatatgtgttcttatttttaaggAGAACAAAATGTTATGACCT
TCAATTTTCTTATACAATTGGTGTGTTCTGATTTTTAGAATcctttatcg
cactatttgtctccctaaacttattaCTACCTTATGGttttgatgtgttc
taaaatctaagaaaaacattttgctaaGATAAACTTGtatgatatttgtt
tttctccaccAAAGaagtgttctgaaaatttctagggttacaagattaca
tcaattttctcttgattatacccatgtctccttaaaagatgtgttctgaa
gctttctaggatTACcgagacaacaagaacacgttagatgacATTGATGA
TACCattgtctcgtcagaacacatcattatttctagctgattaattttcg
aagacctgatcagaacagatcaaaactTCTAGCTGAAATAgcctctcaga
acacatcggaaaaaaaggtcgcctcgcccgGCTGCTTTCGACTTTCTGTA
AAGATGGCGAATTGTTTTAACTTCAGTATTTTATATAATACCGGGTGGTC
AAGAAATAACATGtccaaaattctttttaaaattgtgcCAAAAGTTTGAC
CGCTACAGCCAGGAAAATTTGTATAGTTATAATTTGGACACCTGGGACTC
TCAAACAAAAAATtgggtttgaaaaaacaaagtCAGGGAAACGGCAGGTA
TTTTTGGTAATAGTATATATTTTCAATTGACGATATCGGCTTCGCataaa
aactcagatttgacccccgagaattccccacaatgctttgtgcggaaaag
aTTTCACCGTAAACTTTTTCCcacgcaaagcattgtgggaaattttcgga
ggtcaaatctgagttttcacgttaagccgatatcgtctattgcaaGAAAA
CGatgaaaaattgacgtcaaaaagacaaatttTGATCCGACATGAAATGT
CAATTAgcaaatgaaattgaaatcatCTATCTGCAATCTGGATAACAact
atcaaaaagaaaaaagaaaactagCGACGTTCCAACGTTTGTGTTTAGCA
AGCTGCTTAAGGGTTTTATCGGAGATATATATTTTGGGAGCCTTTGAAAG
ATTGAAATAACACGATACTACTGGATAACTTGACTGAATCATGGTCTTCC
AAAGGACAGTGGACTTCAATGCTCAAATCCTCCAGTTCTTCTACTGTGaa
taaaatcttccttttcgcTGAAGAATTGTACATCTTTTGTGCTCAAAGAT
AAAGAAGTATCATTCTCCCACTGAGTTCTCAGTCTTTGAAGTCTTAGGAA
ATCTTATCCAGGATATCAAGATTTActatagattttattttaatgaaact
GTGATCAGTTGAGTTTATTTAAAagaagatttgaaaataatgttgcaaag
tttgatattttcagaaagttACATTAATAGTCTGATGGTTTTGGTTGTCG
ACCAGGAAAAAGATCATTGGTACTGATTGACATAGTTACATGAAGATCTT
GATTCCTAAATTCTATGACTTCTAGTTCCTCAGCTAGATctcaatatttg
tcaaaatactTATAATATGTTGCAATGAGTTGGACGTATCCTACTTTGTT
ttttgttaaaggttttgtttctcatcaattttaatttacaagcttttcac
attgaattgacacaaatgtggagcaagattgatcagaaagaggaaaagaa
aaacacttttttgtttatatcagcataatataacaataggaagacactgt
ccaGATAtcaaacatgtgtctgatatgaaacagggaacacttatgtaaaa
ctaaaacctttaaCGTGCGGTAATAATACTTTCAACCAAGCTTTGGATCG
CTTCTTTAAAACGTTTGAAAGACCAagttggaaaatattttcttttgctt
gttttttcttctattaagccttctttattttcaatacTTTCTTCCCGTTC
TATGAGTAACTAGGAGAGGGCGTGTAATAGAACTCCAGGAAGCCTGAAAC
CTAATGACTTTTTTCTTTGGCTATCATTCGATTTGATTTTTACGGGTAAA
GGGTTTTACATAGCTAGATGGACTTTCTCGATCTTATCCGAGCACTAGAC
TTATATAAATGTGATTAAAGGATTATTGCCAAAAGGAAAAGAAGTTCTGA
GATATTTTTTCATGGAACGTCGAAGCGAATGGACTGTTGTTTTATGATAA
CATAATTAACATGTTCTAAAATCGGCTAGTTccaaacgcaggtcacaggt
catagaCACAGGTAACAGGccgtacaaactacagaccagaaaCAGTAACG
CACTCGTAATATGTAATTCATAACATGTTTCTCTAAATATTATATGCAAT
GGAAATCGTTGTATACAAAATATTACTATTTAGAAGATTTCAatgacaaa
tcatcaaccccaaatattgacaaagtgacacttaaataaatattaaaaaa
tataaaataccttcagtatgatatttttgacaataaaaaaatgtttttct
gttGACATGTGACCTGTTGAcatgtgacctgtgacctgcgttttcaacta
cacgttttttttttatataagaaacacgtttataaggaacttgaggctga
aaatggtctgGGAAagaaggaattgttaaggaactgctcaggctgagaat
aaaatATCAAGTTAAAGAACAGCAAAAGTTCAATTTGAAATTGCACACAT
TTACAACAACCTAAATAAAAAGACGGTAAATATTGCTGAAACGCCTTTCA
ATAtgtcaaaaagacaaaaaatactGATAAAGAAGCTACACACTTAGCAA
ATCCAAACTTCACAGCTACTAAGTAactaaggaactcgataaggaacttt
gaagctgaaactctctggcaaaataaggaactccaggctcggagccaagt
taaggttccttataaaaaaaacgtgtacccatTCTAAAATCTATTCCTAA
AGAAAAAGCagtcattttcaatcttcattttcgttttttgagaatctttt
CTTTAAATTCGTTCACTGAAAATTACCTTTCCAACAAGGTATTACTTTTA
TAGAGCAGACTTTTTCATTACATTTTAAGAGCATTATAGTCTGAAAACAA
AACACAACAACATTTATTCTCGTAAAAAAGGGTATAAACTTTTTTACATG
TTTGTttccttttccaaaaaaaacttctctttTCTGCAAGGCATAACTTT
CTTGAATCATTTATGGCTGTACGTTTGTGAGGGTGAATTTCCGAAGGCTC
GATCACGAAGAATTAATcataataaatttgatttgataaaatttgatttt
tttatcaacaACAATAGGCttaattttgagaaattaaTTTACACGTTTTA
TGAAGTATTAAAtatcatgttttgaaaattcaatcAGTTAAACTCTAGTC
TTCGTGAATAAAAGTGAAGAAAAGACGTGAGTTTGGGTTCgatgttttaa
ttttctaaaaagtttgGTTACTTTGATTTTACTTTGAGAAAACTGAGCTT
GGATTGGGCTTTTCTTGGGGGAGGgccaaaattcaaaaaggtTTATGTCG
AAAATTCCGGAAATTTTGACCATAATTACCAAAATCCGTAATCTCGCCCA
ATTCTGGCTAAATTCCTATCCAGTTGTCCGTCTTCGAGAAGGGACTAAAT
TTCCGAAATTCATTTTGTTCGAAATCCGCTACTACTACGGGATGTTATTT
AAAGTCTTATTACCACATGAGACAAAAAACTtagctttgaaaaaaaaata
cataataCTCATTCACTCTCAATGATGGCATCAGCAGCAATCACGCAAAT
TATTCGTACCGTGAGTCGTGATTCGACAGGTTCAAGTGGTTCCCGGAACT
CAATGAACTTCTCTGGACGTTTTCAAAACCTCGTCACTCTGATGGCACAT
CGTAAGTGTTTGAGATTCAAAGTACAGTTGTTCAAAGACAGTGGTATATT
AGCTCTTCACGATATGTTTAAGTCATTTTCTTTAACGGAAACACCGGAAA
AAACCGGGACTTGATCACTGGCTGTTATTAAAATAGAAACATAGCATGCA
AAGTCCGGCTTTATCAGGGTGctttcgttggaaagatattaccTCATTTT
GACTTACGAATGTCATAGTTTACTAGTTTCTTCTTGAGAAGTGTTAATTA
TCAGTGATAGGTCATAAAGTTACTAGGCTATGTTGAGAATTTTACAGTGT
GtggaattttgaatgaaaaaaaaacaattttgaggGAGAGATctcgattt
tttttaattgtttgtaATATTCTCATCACCCTTGTAGATGCTTTACGACC
ACTCCCTTACCTCGCTATTAAGTTTAGATTTATATAAAGTTTATACAGTA
CAGACAAGAAATTGACCTCTTGAAAGCTTCGATTTACTTGACATAAAAAA
GTCCCGAAAAAGTTCGAGTTGTTTGTGACACAGGAGTGTTATTATGCCCA
GACcctaaagaatttttttcgaaattgagAAAGCTTGTCGCTATGAAGTA
CAGCTGAAGTTAGAAACCAAAAATCCTCTTTACCTAAATCTGTTTAATTT
TTTCTCCGGAACCCTTAAACCTTTGTTTAGGcccttttggaaattttttt
ccagaaatttGGGGTTTGAAAAACCTTTTGGAAACAGGATTCGACACCGT
AAGGTGCTTTGAtaagatgaaaaagaaacacTGCAAATCTGGAaaggatt
tttgaaatattatggtttgaaaaatatttcgagtgaaaaatgttgaaagt
cGCCTTAATCTCCTGTTGTTTTGTAGCATATTGCTGTTATGAAATATTCA
CTTAAATCCTCCACAAAACTTATTAgtttattttcaaagtttttccaCAT
TCCTCTTGGACACAAAGGGAATGATTACAGTTTTCTAATGTTCCTTGTTA
TTCCGACGAAGGACCTCGTTAGTGTTGTAGTCTGTCTGCAGACTTTTTCT
CAAGTGTTGTTAATAGACTTGATATGGCCTGTTTTTCAGCTTTCGCGTTG
AAGTATGCTGGTTCTGAAGATGACAACCATTCGTTATCGACAATCGGACG
AGAATATAAAGGTAAGATATTTTGATACTACACCCtcttctcatagaccc
actgggaccccttccctctgaaaaaattggccaacATATCGTCCCCGCTG
AAAACTATACTCCAATTTTTTGTCGCCACTGAAATAATCAAatgaaccaa
tcctcactgcaaatttcttttgctttttatccatcccactgaattttctg
acttgataaaacaatggaatttaaatccccagccataaaaatatgttaat
aTAAATCCCTATCATGTTTCAGTCCgaaaaaaattccaccggggccGTAA
GAAGGGGATAGGATACTATATTTCGTTCTACCCATTGCGTTTTAAACGAC
TGTTCATTCATATGTTGTTAAACCTTAGATCAATGCTACTAAAGTGTATT
TGCTAAGGGTGCAATATTATTGTTAAAATATGGAAATcggaattcgaatt
tttttgataatggAGCAAGTTGGATTCTCTAACCATGCCCCATTCTATTT
TTCTTAAACgcttcgaaaaaaaagtttagaaattacaCGAAGGGGCGGAA
CCTCGTGCGTTCTTCCgttattttcatctttattttcttgAGATGCCCAA
AATTGAATCCGGCATGACTGTTTTACgttataaattttttgatttgatta
gtTTCCATTCCCCTTTCTTGATGCTTCAGATGATGACAGAGTACCATTGC
ACACTTATCTCGATCTTGNCTTTCTTGACGCTTCAGATGATGACAGAGTA
CCGTTGCACACTTATCTCGATCTTGGTCTCGATGGATTAATAAGAGAGAC
AAATTTCACTCGTGAAGAAATACAGAGAATGTATCGTGGCTTCAAGCAGG
TAGActtattaaataataaagtttcTCTCAAAACTGAGTATAGTAGTCTT
TTATTCCGATATGCATGTTTTATTGGTAGTCGAAGCATTTGTTGAAAGAa
tggaggttcgagttaaagagacttcaCTGTATTTGATCTTAAAGCCGAAC
TGAGAGCTCTCTGAAAAATTTAGTTTGATTaccgataattttttttttct
caggaaTGCCCAAGAGGTCTTCTGGACGAGGAGACATTTCTGGCCATTTT
GAACATGCTTTTCCCGGGAGGTGATCCAACGTTATATTGTAGTCGAATAT
TCAACACTTTCGACCGAAGAAAGACTGGAAAGCTAACTTTTGAGGTAAGC
CACCGTCATTACGTATATACAGTgggcgctctctaattcgacgttctact
attcgataagctcccgttttcgatcaaattgaaagtcaccATCAAATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062552-exon-scaffold_369-1491911889:94993..95282 | TCONS_00062552-exon-scaffold_369-1491911889:94993..95282 | Clytia hemisphaerica | exon |
| TCONS_00062552-exon-scaffold_369-1510915933:94993..95282 | TCONS_00062552-exon-scaffold_369-1510915933:94993..95282 | Clytia hemisphaerica | exon |
| TCONS_00062552-exon-scaffold_369-1575043694:94993..95282 | TCONS_00062552-exon-scaffold_369-1575043694:94993..95282 | Clytia hemisphaerica | exon |
| TCONS_00062552-exon-scaffold_369-1491911889:100482..100553 | TCONS_00062552-exon-scaffold_369-1491911889:100482..100553 | Clytia hemisphaerica | exon |
| TCONS_00062552-exon-scaffold_369-1510915933:100482..100553 | TCONS_00062552-exon-scaffold_369-1510915933:100482..100553 | Clytia hemisphaerica | exon |
| TCONS_00062552-exon-scaffold_369-1575043694:100482..100553 | TCONS_00062552-exon-scaffold_369-1575043694:100482..100553 | Clytia hemisphaerica | exon |
| TCONS_00062552-exon-scaffold_369-1491911889:101279..101391 | TCONS_00062552-exon-scaffold_369-1491911889:101279..101391 | Clytia hemisphaerica | exon |
| TCONS_00062552-exon-scaffold_369-1510915933:101279..101391 | TCONS_00062552-exon-scaffold_369-1510915933:101279..101391 | Clytia hemisphaerica | exon |
| TCONS_00062552-exon-scaffold_369-1575043694:101279..101391 | TCONS_00062552-exon-scaffold_369-1575043694:101279..101391 | Clytia hemisphaerica | exon |
| TCONS_00062552-exon-scaffold_369-1491911889:101596..101842 | TCONS_00062552-exon-scaffold_369-1491911889:101596..101842 | Clytia hemisphaerica | exon |
| TCONS_00062552-exon-scaffold_369-1510915933:101596..101842 | TCONS_00062552-exon-scaffold_369-1510915933:101596..101842 | Clytia hemisphaerica | exon |
| TCONS_00062552-exon-scaffold_369-1575043694:101596..101842 | TCONS_00062552-exon-scaffold_369-1575043694:101596..101842 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_369 | supercontig | scaffold_369:94993..101842 + |
Blast
BLAST of TCONS_00062552 vs. Swiss-Prot (Human)
Match: KCIP1 (Kv channel-interacting protein 1 OS=Homo sapiens GN=KCNIP1 PE=1 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 2.761e-18 Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 2
Query: 401 GLDGLIRETNFTREEIQRMYRGFKQECPRGLLDEETFLAILNMLFPGGDPTLYCSRIFNTFDRRKTGKLTFE 616
GL+ L +TNFT+ E+Q +YRGFK ECP G+++E+TF I FP GD + Y +FN FD +TG + FE
Sbjct: 49 GLEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEDTFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFE 120
The following BLAST results are available for this feature:
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