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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062567 ID=TCONS_00062567|Name=TCONS_00062567|organism=Clytia hemisphaerica|type=transcript|length=1390bp
CGTACTTTTAGTATTAAAGAAaggatttttggattttaaactTCTGGATC
TATTTAATTATTTGATGGTTTCTATCTCTTTAATTATAATATGTCTAAGC
AACAAATCTGTTTATTTCAGTTCATGGCAAGTGGTCGAAATGGGGCTCTT
GGGGAAAGTGCAGTCGATCTTGTGGCACTGGTCGGAAAACTAGAACAAGA
ACATGTACTAATCCTGTACCTCAGCATGGTGGATTGGATTGTGCAGACTC
TGATACTGCTGTTCAGAATTGCAATACAAAGCCTTGTCCGGTTCATGGCA
ACTGGGCAGATTGGAGCTCATGGGGAAAGTGTAGTGCATCATGTGGCACT
GGCCAGCAAACTAGAACAAGAACATGTACTAATCCTCCACCTCAGCATGG
TGGATTGAATTGTGCAGACTCTGATACTGCTGTTCGGAATTGCAATACAT
ATAAGCCTTGTCCGGGTAAGGAATACAAATTTTAATTCTTATCCTCGACT
ATGATTCTTCGTAGGATGGCTAAACTTCCTCAAGTCCGGGGAAACTTTCC
TTTTGCCGCTTCATAGCGGAGAAAGACCAAGACATTCGGTAAgttaaaaa
agaccaagacTTTCGGTAGGTACAAAAGTAATATTAACTTGCTAGATGGG
TTAACTCAAGGCTGTTTTGTGTCATCTACGCATTAGTACGCAGAGAAAAA
CTGGTAGGTATACCAGGAGAAAACGGTGGAAAGATACGCTATAAATATTT
TCCTCGGGGATGAGAAATTTTAGCCATCCGACAGTAATTCATCACAACAA
GAGTGTGTTGTCATTTGGGAATTTTCGTTAAACAAACGAAAGTCTTTCGC
AACACTATTCAATGCAATCATACTATAGCACAATACTATTGTACTCACAC
GTGAAGTCTTAAaataaattcttcatttttccacgaaggaaaagtttttt
tgaaaaaagaaatttctcgGAAGTTCTTAATAAAATAgtcaacttttttg
atttttaaaccgGGAACAATTTTGTTAAGGATAATTTAAATAAAtaacaa
gagccacaaagatgtggttaaatatttcctccaatagctcagagcataga
ttgtagtcgcagtcgaaccccacagattatcctaAAGCCCCAACTTAGTA
ACTTAGATTTATTAAAGCCTTTATATTAAGCAATATCTGATGCAAAACAA
ATTataaccatagtataagaaagccgcggctggaatatgtaccgcattgt
cttttcagttaattgctgttctatctctgtctccgagctttataagaaca
tcaNACATCAAGattgtcagtttattattggtagatagtttttgaaattt
ttctcttattttccttcacaagaagattttttatttctag Run BLAST on NCBI transcript from alignment at scaffold_369:347244..350104+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062567 ID=TCONS_00062567|Name=TCONS_00062567|organism=Clytia hemisphaerica|type=transcript|length=2861bp|location=Sequence derived from alignment at scaffold_369:347244..350104+ (Clytia hemisphaerica)
CGTACTTTTAGTATTAAAGAAaggatttttggattttaaactTCTGGATC
TATTTAATTATTTGATGGTTTCTATCTCTTTAATTATAATATGTCTAAGC
AACAAATCTGTTTATTTCAGTTCATGGCAAGTGGTCGAAATGGGGCTCTT
GGGGAAAGTGCAGTCGATCTTGTGGCACTGGTCGGAAAACTAGAACAAGA
ACATGTACTAATCCTGTACCTCAGCATGGTGGATTGGATTGTGCAGACTC
TGATACTGCTGTTCAGAATTGCAATACAAAGCCTTGTCCGGGTAAGAAGT
GTGAATTATAGTTTGATCTTttcatcattaaaaaaaatagcaCAGAGCTG
CATTCGAGAACGACCCTAAGGCTTCAAATcgaatttttggcaaaatatct
ACCCCTCTGTATAATATAATACTCATGTACAGAAAAATTTGTAATcgaaa
aatttaatatttccTGAGTTTTGAAAggggtattttacagaccaatcCGA
AATAAGTACCAATGATTTAGTTTAAAAGCTTAACATGTTCACTACCGAGT
CTTTacagaaatcgaaaaattgacaCATTCGAATTTTatcgaaagtttga
ctttcagaggGTCCTGCAGCCTCAGCTTTCCTTTAAATGCCTTCAAATTG
TATACCAATGGACGTTGAATTTCATGTAGATTTcgaaaatgcaataaaaa
agcaaattaaagtctgtctaaaGTTATAGCCCTTTGAAGTACTACTGGTA
TTTTGACCCCTCtactcattgagtttcaagcccgaagggctagaggcgag
actcctgagggaaatgaaaccacttatttcccatccagaacgcccgcgca
tagtttttacacaaacaccgGGTTGAAGTAATATCTATATCTCTcggttt
caaaaaatgtagtcctccaaaacaaaggaattgctagatacAATCGGTTG
TCATTATTACGGCGTGTTATATGCGTGTtttatgcgcgttttggatggga
aatgagtAGCTTcgatttctcttgcctgagaagggttaaagtttcgcctc
tagcccttcgggcttaaaaTTCAATGCCTCTACTACCAGTATACTCGTAT
TCGCCAAGTTagccttttctttttcacagagaaaattcataaaatattAC
TAACCCAAAAGACGACCTAACCCATTCAGTTTCAAGACGAAAGCTACGGG
CAAATTTTCAACCTTACCAAAGTaaggaaaaataaaaccttaacaTGTAC
GCCACATATGTATTGGATAGtggatagactggagtcgtttataatgcgtg
taatactaataataccaatactactaataataatacgggatttagtttgt
ataaaactgttccattcattaccttttgctttatttctactatgtataaa
ttagtcgtctagcttgctagactagatAGTGGATTAAATCTACCGAGTTG
TTCATTTTGTCGAGTTCTTGCGGTACATGTTACTTCCAATCCTGCGTTTG
TATTAAATCAACGCGGGCCGCATAATATTATATAGGAATTAactggcttc
aaatcctacataGGTTGTTTCAACTTCAGTTATCCCTTGTGACTATCCTA
TCATTTTTAAAGGTCACCTAAAAAAACTCTTACACCGTTGGTAAGTTTAT
CGCCTCTGCTTGAGACCTATTTTTAATTGAATCGTCAGCATTGTACGTGC
GCTTATCTAAGGGTTAATTATCTTGAATAGActtaatgtttttatttcat
ataAACTTACAGTTCATGGCAACTGGGCAGATTGGAGCTCATGGGGAAAG
TGTAGTGCATCATGTGGCACTGGCCAGCAAACTAGAACAAGAACATGTAC
TAATCCTCCACCTCAGCATGGTGGATTGAATTGTGCAGACTCTGATACTG
CTGTTCGGAATTGCAATACATATAAGCCTTGTCCGGGTAAGGAATACAAA
TTTTAATTCTTATCCTCGACTATGATTCTTCGTAGGATGGCTAAACTTCC
TCAAGTCCGGGGAAACTTTCCTTTTGCCGCTTCATAGCGGAGAAAGACCA
AGACATTCGGTAAgttaaaaaagaccaagacTTTCGGTAGGTACAAAAGT
AATATTAACTTGCTAGATGGGTTAACTCAAGGCTGTTTTGTGTCATCTAC
GCATTAGTACGCAGAGAAAAACTGGTAGGTATACCAGGAGAAAACGGTGG
AAAGATACGCTATAAATATTTTCCTCGGGGATGAGAAATTTTAGCCATCC
GACAGTAATTCATCACAACAAGAGTGTGTTGTCATTTGGGAATTTTCGTT
AAACAAACGAAAGTCTTTCGCAACACTATTCAATGCAATCATACTATAGC
ACAATACTATTGTACTCACACGTGAAGTCTTAAaataaattcttcatttt
tccacgaaggaaaagtttttttgaaaaaagaaatttctcgGAAGTTCTTA
ATAAAATAgtcaacttttttgatttttaaaccgGGAACAATTTTGTTAAG
GATAATTTAAATAAAtaacaagagccacaaagatgtggttaaatatttcc
tccaatagctcagagcatagattgtagtcgcagtcgaaccccacagatta
tcctaAAGCCCCAACTTAGTAACTTAGATTTATTAAAGCCTTTATATTAA
GCAATATCTGATGCAAAACAAATTataaccatagtataagaaagccgcgg
ctggaatatgtaccgcattgtcttttcagttaattgctgttctatctctg
tctccgagctttataagaacatcaNACATCAAGattgtcagtttattatt
ggtagatagtttttgaaatttttctcttattttccttcacaagaagattt
tttatttctag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062567-exon-scaffold_369-1491911889:347244..347534 | TCONS_00062567-exon-scaffold_369-1491911889:347244..347534 | Clytia hemisphaerica | exon |
| TCONS_00062567-exon-scaffold_369-1510915933:347244..347534 | TCONS_00062567-exon-scaffold_369-1510915933:347244..347534 | Clytia hemisphaerica | exon |
| TCONS_00062567-exon-scaffold_369-1575043694:347244..347534 | TCONS_00062567-exon-scaffold_369-1575043694:347244..347534 | Clytia hemisphaerica | exon |
| TCONS_00062567-exon-scaffold_369-1491911889:349006..350104 | TCONS_00062567-exon-scaffold_369-1491911889:349006..350104 | Clytia hemisphaerica | exon |
| TCONS_00062567-exon-scaffold_369-1510915933:349006..350104 | TCONS_00062567-exon-scaffold_369-1510915933:349006..350104 | Clytia hemisphaerica | exon |
| TCONS_00062567-exon-scaffold_369-1575043694:349006..350104 | TCONS_00062567-exon-scaffold_369-1575043694:349006..350104 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_369 | supercontig | scaffold_369:347244..350104 + |
Blast
BLAST of TCONS_00062567 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 7.859e-18 Identity = 59/110 (53.64%), Postives = 72/110 (65.45%), Query Frame = 3
Query: 120 VHGKWSKWGSWGKCXXXXXXXXXXXXXXXXNPVPQHGGLDCADSDTAVQNCNTKPCPVHGNWADWSSWGKCSASXXXXXXXXXXXXXNPPPQHGGLNCADSDTAVRNCNT 449
+HGKW+ W SW CS SCG G + RTR C++PVPQ+GG C SD CN+ PCP HGNW+ WS WG CS +C GQ R RTC NPPP +GG C D+ ++ CNT
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNT 4808
The following BLAST results are available for this feature:
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