TCONS_00062593 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062593
Unique NameTCONS_00062593
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length750

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062593 ID=TCONS_00062593|Name=TCONS_00062593|organism=Clytia hemisphaerica|type=transcript|length=750bp
TTCCTTAGTTTTATAAATAGTAGGGTTCctataaatcataaaaatgcACC
ACTTAGTTTTCCTGAGATTGATTTCAAAGGGAATGACCTCCAAACCTTTG
GGAAAAACAAAAGATGTTAGCTGATGGATTAAAATGTCAGATCTTGGATA
GACTAAAAGACCACCACTGGTGTCAGTATAATCTAGCCTCAGAGGTGTCT
TGTAACCAGGAAGAAGTAAAGTACTGGTTGTGTAAGATTCATCAAGCTTA
GTTTCAGAAATTGCTAAAACATCTATGTTTTGTCCCAAAAAACTATGGAG
ATCTTTTAACTTATGTCGTGCAGAATTTATATTAATATACCCTATTGTTA
GGTTTAAAGGAAATTTCAACTTTTGCTGTTTGAGATTATCAATACAGTCA
GAATCGTCCTCCGATTCACTACTTAAACTTGGAGAAAACACGAATCAACA
TTTAgccaaaaaagatttaaaattcagAGCTAAGGTTTTCAGACCCTTCG
GATTCATGTGCAGCTTCTTTCTTGCTAAGCATGAATGATCGACATTACCA
TTTTCCACTAGACCAATGTTTCGTTCCGAGCAAAACTTTctcaattcttt
atttttctcacCAACTTTAGTGAATCTGCCACCAACATCAGTTCTCAAAC
AAAGCTCAGagaaacaaatttgtgtttccgGACTAATTTCTCGAACTGTT
TCAATAATGGTTTGAAGGTTATCCGTTGTGTCATTAATTCCTTTGGTTAA
Run BLAST on NCBI

protein sequence of TCONS_00062593-protein

>TCONS_00062593-protein ID=TCONS_00062593-protein|Name=TCONS_00062593-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
LTKGINDTTDNLQTIIETVREISPETQICFSELCLRTDVGGRFTKVGEKN
KELRKFCSERNIGLVENGNVDHSCLARKKLHMNPKGLKTLALNFKSFLAK
C
Run BLAST on NCBI

transcript from alignment at scaffold_369:429998..430747

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062593 ID=TCONS_00062593|Name=TCONS_00062593|organism=Clytia hemisphaerica|type=transcript|length=750bp|location=Sequence derived from alignment at scaffold_369:429998..430747 (Clytia hemisphaerica)
TTAACCAAAGGAATTAATGACACAACGGATAACCTTCAAACCATTATTGA
AACAGTTCGAGAAATTAGTCcggaaacacaaatttgtttctCTGAGCTTT
GTTTGAGAACTGATGTTGGTGGCAGATTCACTAAAGTTGgtgagaaaaat
aaagaattgagAAAGTTTTGCTCGGAACGAAACATTGGTCTAGTGGAAAA
TGGTAATGTCGATCATTCATGCTTAGCAAGAAAGAAGCTGCACATGAATC
CGAAGGGTCTGAAAACCTTAGCTctgaattttaaatcttttttggcTAAA
TGTTGATTCGTGTTTTCTCCAAGTTTAAGTAGTGAATCGGAGGACGATTC
TGACTGTATTGATAATCTCAAACAGCAAAAGTTGAAATTTCCTTTAAACC
TAACAATAGGGTATATTAATATAAATTCTGCACGACATAAGTTAAAAGAT
CTCCATAGTTTTTTGGGACAAAACATAGATGTTTTAGCAATTTCTGAAAC
TAAGCTTGATGAATCTTACACAACCAGTACTTTACTTCTTCCTGGTTACA
AGACACCTCTGAGGCTAGATTATACTGACACCAGTGGTGGTCTTTTAGTC
TATCCAAGATCTGACATTTTAATCCATCAGCTAACATCTTTTGTTTTTCC
CAAAGGTTTGGAGGTCATTCCCTTTGAAATCAATCTCAGGAAAACTAAGT
GGTgcatttttatgatttatagGAACCCTACTATTTATAAAACTAAGGAA

Coding sequence (CDS) from alignment at scaffold_369:429998..430747

>TCONS_00062593 ID=TCONS_00062593|Name=TCONS_00062593|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_369:429998..430747 (Clytia hemisphaerica)
TTAACCAAAGGAATTAATGACACAACGGATAACCTTCAAACCATTATTGA
AACAGTTCGAGAAATTAGTCcggaaacacaaatttgtttctCTGAGCTTT
GTTTGAGAACTGATGTTGGTGGCAGATTCACTAAAGTTGgtgagaaaaat
aaagaattgagAAAGTTTTGCTCGGAACGAAACATTGGTCTAGTGGAAAA
TGGTAATGTCGATCATTCATGCTTAGCAAGAAAGAAGCTGCACATGAATC
CGAAGGGTCTGAAAACCTTAGCTctgaattttaaatcttttttggcTAAA
TGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039222XLOC_039222Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062593-exon-scaffold_369-1491911889:429998..430747TCONS_00062593-exon-scaffold_369-1491911889:429998..430747Clytia hemisphaericaexon
TCONS_00062593-exon-scaffold_369-1510915933:429998..430747TCONS_00062593-exon-scaffold_369-1510915933:429998..430747Clytia hemisphaericaexon
TCONS_00062593-exon-scaffold_369-1575043694:429998..430747TCONS_00062593-exon-scaffold_369-1575043694:429998..430747Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062593-proteinTCONS_00062593-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_369supercontigscaffold_369:429998..430747 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.74635	1.62924	1.75241	1.34269	33.937	22.6608	17.7221	20.0571	6.23364	7.06437	4.47485	4.65313	2.9668	1.95691	2.17055	2.09904	2.58631	3.21425	3.70549	3.21833	3.50859	2.7945	2.71845	4.92954	1.57453	2.9511	23.5273	18.9632	3.72257	3.27725
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013830SGNH_hydro
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062593 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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