TCONS_00062594 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062594
Unique NameTCONS_00062594
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length619

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062594 ID=TCONS_00062594|Name=TCONS_00062594|organism=Clytia hemisphaerica|type=transcript|length=619bp
TTGCTTCTTTTCGATTAAGATGTTCTCGATCTTTGTTTCTATCTTTTTCT
CGAGTATGCTCATCTTTGTTTCCaggctttctttgatttcttttgtaaga
aaGTTTACATCATTTGATTTCAGTTgggaaatttcttcattttgtacttt
catgatgttttcacatgctttaatttccttttgaaatccgattttggtgt
ttttgcatgTTTCAACTCGTTCGATCAGCTCTGGCGAGATCTTAATGCAA
CTTTGGCATTGAAAACTTCGAGATTTAAACGTTAAGCAAATCTGTATTTG
GTAGATTGGTAGCTCAGAACAATCATAATGAACATCTCGGTGGCACTTCC
TGCAGGTCAGAATGTCTTTTGGTGTTGTTCCTTCTCTAATAATGCATTTT
TCTGGGGTGCAAACCTCATTTTTAAGCGGCAAttcttggtcattttcatc
gatttttccCTCCCTTTTCCTTGCGAGATTCGCCAGCTTAAAAAAAGACG
CCTTGATGCGAAAAAGTATTTGACGTAATATATTCAACGACAGAAAGAAT
TATAgtttgttttaaaattaaaatcaagcTTTCATACCcgtataataaaa
gccgacaaaAATAAGAAGG
Run BLAST on NCBI

transcript from alignment at scaffold_369:432938..433556

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062594 ID=TCONS_00062594|Name=TCONS_00062594|organism=Clytia hemisphaerica|type=transcript|length=619bp|location=Sequence derived from alignment at scaffold_369:432938..433556 (Clytia hemisphaerica)
CCTTCTTATTtttgtcggcttttattatacgGGTATGAAAgcttgatttt
aattttaaaacaaacTATAATTCTTTCTGTCGTTGAATATATTACGTCAA
ATACTTTTTCGCATCAAGGCGTCTTTTTTTAAGCTGGCGAATCTCGCAAG
GAAAAGGGAGggaaaaatcgatgaaaatgaccaagaaTTGCCGCTTAAAA
ATGAGGTTTGCACCCCAGAAAAATGCATTATTAGAGAAGGAACAACACCA
AAAGACATTCTGACCTGCAGGAAGTGCCACCGAGATGTTCATTATGATTG
TTCTGAGCTACCAATCTACCAAATACAGATTTGCTTAACGTTTAAATCTC
GAAGTTTTCAATGCCAAAGTTGCATTAAGATCTCGCCAGAGCTGATCGAA
CGAGTTGAAAcatgcaaaaacaccaaaatcggatttcaaaaggaaattaa
agcatgtgaaaacatcatgaaagtacaaaatgaagaaatttcccAACTGA
AATCAAATGATGTAAACtttcttacaaaagaaatcaaagaaagcctGGAA
ACAAAGATGAGCATACTCGAGAAAAAGATAGAAACAAAGATCGAGAACAT
CTTAATCGAAAAGAAGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039223XLOC_039223Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062594-exon-scaffold_369-1491911889:432938..433556TCONS_00062594-exon-scaffold_369-1491911889:432938..433556Clytia hemisphaericaexon
TCONS_00062594-exon-scaffold_369-1510915933:432938..433556TCONS_00062594-exon-scaffold_369-1510915933:432938..433556Clytia hemisphaericaexon
TCONS_00062594-exon-scaffold_369-1575043694:432938..433556TCONS_00062594-exon-scaffold_369-1575043694:432938..433556Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_369supercontigscaffold_369:432938..433556 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.866664	1.2342	1.66025	1.76555	1.01517	0.498618	1.13914	1.26427	0.507792	0.944716	0.126008	0.610398	0.15061	0.833111	0	0.339683	0.55622	0.449756	0.11923	0.187795	0.141604	1.111	0	0.130589	0.94239	1.08117	0.118651	0.0273832	0.144258	0.320136
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062594 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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