TCONS_00062597 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062597
Unique NameTCONS_00062597
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1246

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062597 ID=TCONS_00062597|Name=TCONS_00062597|organism=Clytia hemisphaerica|type=transcript|length=1246bp
GTGACTTTCTTTGTACAGCCTCAACTTTAGATGTCAATGTTTCAATTCCT
GGAGTGGTCCATACACAAGATGCATATTCAACAAGTGGACGTATGTATGT
TTTATAGCATGCTAATCGTGTTTCAGAATCAGTCATTGACAACTTTCTCT
GTAGAAAAATACGAGTGGAGTTTGCTTTTGATGTGATAATAGCAACATGA
GGTTTCCAGGATAAGTTTTTTGAGATGGTAACACCCAGATATTTAGCTTT
GTCAACTATTTTCAGTTCTTGATCATGAATCTTATACTTATGATCAATAA
TTTTACGTTTGTTCGTTACTCTCAGCACATAACATTTATCCGGATGAAAC
TCCATCGACCATTTCTTCTCCCACAAGACAAGTTGGTCAAGATCAGATTG
CAGTGAATGTACATCATTTAGGCAATCAATTACTTTATATAGGTATGCAT
CATCTGCAAAAAGGGCAATGTTGGATTCACTTGAAGGGGCATATCATAGA
TGTAGACCAAGAATAACAATGGCCCTAGAACTGAGCCCTGGGGAACGCCT
GAAGTGACTGCTATCCGTTTAGATAAAGTTCCACGCAGTGCGATCCGATT
CCGAGTGCGATCTCTCAAAAAGTCTGATATCCACAACAGTAGTTTACCAC
GAATACCATAGTGTTCTAATTTGATAAGAAGCTTCCTGTGGCAAACCTTG
TCAAAGGCTTTACTGAAATCCAACAATATCGAGTCTGTTTGTTTTCTATT
ATTCAGGGATTTTGAAAGTGTGTTGATTGTTTGAATCAGTTGTGTCTCAC
AAGAACGAAATTTTCTAAACCCATGCTGTGTTTCAGATAAAGTTCTATCG
TTGTCAAAATGTTTCATGATGTGACTGTGAACAATGTGCTCCATAAGTTT
ACAAGTGACGGACGTTAAACTGATTGGTCTGTAGTTTACAGCTTTGGATC
GATCTTTATTTCCACCTTTATATAAAGGAGTAACCAAAGCATGTCGCCAT
TCATTTGGAATTGTTCCTTGCTTTAGGGATGCAGAGAAGAGAAGTACCAA
TGCATCAGGAACAATTTCAGCACATTCATAAAGTATTCTGGCAGAGACAT
TATCGGGACCACAAGCTTTCTTGGGGTTGATGTCGGATAGCAATTTTTGG
ATATCATTTCGAGTAAAAAGATAAACCTGTACGGGAGATCAAGGCTCGAT
TCTCACCCACGGCAGCTAGCTTCGCAAGTGAgcaaaccttcgcccg
Run BLAST on NCBI

protein sequence of TCONS_00062597-protein

>TCONS_00062597-protein ID=TCONS_00062597-protein|Name=TCONS_00062597-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MEHIVHSHIMKHFDNDRTLSETQHGFRKFRSCETQLIQTINTLSKSLNNR
KQTDSILLDFSKAFDKVCHRKLLIKLEHYGIRGKLLLWISDFLRDRTRNR
IALRGTLSKRIAVTSGVPQGSVLGPLLFLVYIYDMPLQVNPTLPFLQMMH
TYIK
Run BLAST on NCBI

transcript from alignment at scaffold_369:445523..446768

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062597 ID=TCONS_00062597|Name=TCONS_00062597|organism=Clytia hemisphaerica|type=transcript|length=1246bp|location=Sequence derived from alignment at scaffold_369:445523..446768 (Clytia hemisphaerica)
cgggcgaaggtttgcTCACTTGCGAAGCTAGCTGCCGTGGGTGAGAATCG
AGCCTTGATCTCCCGTACAGGTTTATCTTTTTACTCGAAATGATATCCAA
AAATTGCTATCCGACATCAACCCCAAGAAAGCTTGTGGTCCCGATAATGT
CTCTGCCAGAATACTTTATGAATGTGCTGAAATTGTTCCTGATGCATTGG
TACTTCTCTTCTCTGCATCCCTAAAGCAAGGAACAATTCCAAATGAATGG
CGACATGCTTTGGTTACTCCTTTATATAAAGGTGGAAATAAAGATCGATC
CAAAGCTGTAAACTACAGACCAATCAGTTTAACGTCCGTCACTTGTAAAC
TTATGGAGCACATTGTTCACAGTCACATCATGAAACATTTTGACAACGAT
AGAACTTTATCTGAAACACAGCATGGGTTTAGAAAATTTCGTTCTTGTGA
GACACAACTGATTCAAACAATCAACACACTTTCAAAATCCCTGAATAATA
GAAAACAAACAGACTCGATATTGTTGGATTTCAGTAAAGCCTTTGACAAG
GTTTGCCACAGGAAGCTTCTTATCAAATTAGAACACTATGGTATTCGTGG
TAAACTACTGTTGTGGATATCAGACTTTTTGAGAGATCGCACTCGGAATC
GGATCGCACTGCGTGGAACTTTATCTAAACGGATAGCAGTCACTTCAGGC
GTTCCCCAGGGCTCAGTTCTAGGGCCATTGTTATTCTTGGTCTACATCTA
TGATATGCCCCTTCAAGTGAATCCAACATTGCCCTTTTTGCAGATGATGC
ATACCTATATAAAGTAATTGATTGCCTAAATGATGTACATTCACTGCAAT
CTGATCTTGACCAACTTGTCTTGTGGGAGAAGAAATGGTCGATGGAGTTT
CATCCGGATAAATGTTATGTGCTGAGAGTAACGAACAAACGTAAAATTAT
TGATCATAAGTATAAGATTCATGATCAAGAACTGAAAATAGTTGACAAAG
CTAAATATCTGGGTGTTACCATCTCAAAAAACTTATCCTGGAAACCTCAT
GTTGCTATTATCACATCAAAAGCAAACTCCACTCGTATTTTTCTACAGAG
AAAGTTGTCAATGACTGATTCTGAAACACGATTAGCATGCTATAAAACAT
ACATACGTCCACTTGTTGAATATGCATCTTGTGTATGGACCACTCCAGGA
ATTGAAACATTGACATCTAAAGTTGAGGCTGTACAAAGAAAGTCAC

Coding sequence (CDS) from alignment at scaffold_369:445523..446768

>TCONS_00062597 ID=TCONS_00062597|Name=TCONS_00062597|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_369:445523..446768 (Clytia hemisphaerica)
ATGGAGCACATTGTTCACAGTCACATCATGAAACATTTTGACAACGATAG
AACTTTATCTGAAACACAGCATGGGTTTAGAAAATTTCGTTCTTGTGAGA
CACAACTGATTCAAACAATCAACACACTTTCAAAATCCCTGAATAATAGA
AAACAAACAGACTCGATATTGTTGGATTTCAGTAAAGCCTTTGACAAGGT
TTGCCACAGGAAGCTTCTTATCAAATTAGAACACTATGGTATTCGTGGTA
AACTACTGTTGTGGATATCAGACTTTTTGAGAGATCGCACTCGGAATCGG
ATCGCACTGCGTGGAACTTTATCTAAACGGATAGCAGTCACTTCAGGCGT
TCCCCAGGGCTCAGTTCTAGGGCCATTGTTATTCTTGGTCTACATCTATG
ATATGCCCCTTCAAGTGAATCCAACATTGCCCTTTTTGCAGATGATGCAT
ACCTATATAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039226XLOC_039226Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062597-proteinTCONS_00062597-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062597-exon-scaffold_369-1491911889:445523..446768TCONS_00062597-exon-scaffold_369-1491911889:445523..446768Clytia hemisphaericaexon
TCONS_00062597-exon-scaffold_369-1510915933:445523..446768TCONS_00062597-exon-scaffold_369-1510915933:445523..446768Clytia hemisphaericaexon
TCONS_00062597-exon-scaffold_369-1575043694:445523..446768TCONS_00062597-exon-scaffold_369-1575043694:445523..446768Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_369supercontigscaffold_369:445523..446768 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.11361	0.856141	1.16144	1.47284	1.16752	0.963981	0.704116	1.07848	0.85181	1.07626	1.03515	0.836002	1.06814	0.687982	0.528455	1.05716	0.93938	1.1303	0.93124	1.10961	1.0957	0.782767	0.683587	0.583695	0.869882	1.07749	0.754906	0.502538	0.342388	0.51606
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
[Close]
BLAST of TCONS_00062597 vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.942e-16
Identity = 63/220 (28.64%), Postives = 109/220 (49.55%), Query Frame = -2 
Query:  511 TRNDIQKLLSDINPKKACGPDNVSARILYECAEIVPDALVLLFSASLKQGTIPNEWRHALVTPLYKGGNKDRSKAVNYRPISLTSVTCKLMEHIVHSHIMKHFDNDRTLSETQHGFRKFRSCETQLIQTINTLSKSLNNRKQTDSIL--LDFSKAFDKVCHRKLLIKLEHYGIRGKLLLWISDFLRDRTRNRIALRGTLSKRIAVTSGVPQGSVLGPLLF 1164
            T ++I  +++ +  KK+ GPD  +A       E +   L+ LF +  K+G +PN +  A +  + K G +D +K  N+RPISL ++  K++  I+ + I +H    + +   Q GF         + ++IN + + +N  K  + ++  +D  KAFDK+    +L  L   GI G + L I   + D+    I L G   +   + +G  QG  L PLLF
Sbjct:  454 TGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPG-RDTTKKENFRPISLMNIDAKILNKILANRIQQHI--KKLIHHDQVGFIPGMQGWFNIRKSINVI-QHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDG-MYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLF 668
The following BLAST results are available for this feature:
BLAST of TCONS_00062597 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LORF21.942e-1628.64LINE-1 retrotransposable element ORF2 protein OS=H... [more]
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