TCONS_00062627 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062627
Unique NameTCONS_00062627
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length399

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062627 ID=TCONS_00062627|Name=TCONS_00062627|organism=Clytia hemisphaerica|type=transcript|length=399bp
CAAGAAATGTGAACACAATTTATGTAAAGCTTGTTGTAAAGATATGACCG
CTATCAAAGTACTCGATTGTTCAGGTCACAAATTCAAATTCTTATTCAAC
AAACTGAGAcgtgaaaaagaagatgaagaagaagcagaaaagcagaaaca
aaaagctgaaaatgcACCGTGCCAAGACAAATATATAAAAGCTGGTGTCA
ATGTAGACGAAAACCGGAACGGCGGAGAAAAAAACAGTGATAATGATGCC
AAAGATCCGAATTCGATCATTGCCACTTGATGAAAGCATCGGAAAGGTTA
ATTTTTACATCTACCAAAGTGAAGTACCTTCTATTTTGGAATGCATAGTT
CCTTTGGAAGTTTGATTGGGTTTGTTTTCAATCACTGCGAACTTTTCAT
Run BLAST on NCBI

transcript from alignment at scaffold_370:234325..235163+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062627 ID=TCONS_00062627|Name=TCONS_00062627|organism=Clytia hemisphaerica|type=transcript|length=839bp|location=Sequence derived from alignment at scaffold_370:234325..235163+ (Clytia hemisphaerica)
CAAGAAATGTGAACACAATTTATGTAAAGCTTGTTGTAAAGATATGACCG
CTATCAAAGTACTCGATTGTTCAGGtacgttttcatttttttgtttactt
cataCTGGTTTATTGTAGTTTCTAGACGATCTATTCAAGAGGGAAATGGA
TCTAAAAATCAGGGTTTTACTCCGCCAAATGACAAAACATAGTATAGCTC
CAGTGGAGTTGAGATTCTAAACTGGCAGATCTTTAGCAATGTAATGCTGT
TATGACCATCGGTTGGCAAATGAAACTTCTAGACCAGTGATTTTATTTAA
ACATGTTTGCCGTTCGCTGAGCCTTAAAAAACAACTTGAAAACTTATAAC
TAGCGTCTTTGTTGTTTATTTGGGCTCTACTCCACTCGCCTTTATTCTAG
ATattattaataaaaaaaaaagccatTAGAGGGGATTGGCCTTAAATTTC
ATCTTGCTTTCTACAAGACCTATTATATGTCATCCTTTATTTATCGTTTT
CGTTATTTTTGAAGGTCACAAATTCAAATTCTTATTCAACAAACTGAGAc
gtgaaaaagaagatgaagaagaagcagaaaagcagaaacaaaaagctgaa
aatgcACCGTGCCAAGACAAATATATAAAAGCTGGTGTCAATGTAGACGA
AAACCGGAACGGCGGAGAAAAAAACAGTGATAATGATGCCAAAGATCCGA
ATTCGATCATTGCCACTTGATGAAAGCATCGGAAAGGTTAATTTTTACAT
CTACCAAAGTGAAGTACCTTCTATTTTGGAATGCATAGTTCCTTTGGAAG
TTTGATTGGGTTTGTTTTCAATCACTGCGAACTTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039247XLOC_039247Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062627-exon-scaffold_370-1491911889:234325..234398TCONS_00062627-exon-scaffold_370-1491911889:234325..234398Clytia hemisphaericaexon
TCONS_00062627-exon-scaffold_370-1510915933:234325..234398TCONS_00062627-exon-scaffold_370-1510915933:234325..234398Clytia hemisphaericaexon
TCONS_00062627-exon-scaffold_370-1575043694:234325..234398TCONS_00062627-exon-scaffold_370-1575043694:234325..234398Clytia hemisphaericaexon
TCONS_00062627-exon-scaffold_370-1491911889:234839..235163TCONS_00062627-exon-scaffold_370-1491911889:234839..235163Clytia hemisphaericaexon
TCONS_00062627-exon-scaffold_370-1510915933:234839..235163TCONS_00062627-exon-scaffold_370-1510915933:234839..235163Clytia hemisphaericaexon
TCONS_00062627-exon-scaffold_370-1575043694:234839..235163TCONS_00062627-exon-scaffold_370-1575043694:234839..235163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_370supercontigscaffold_370:234325..235163 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.3965	0.000121005	0.25426	2.06484	3.40188	2.82209	5.4119	2.53604	5.58562	5.2132	3.16596	3.74865	5.08648	4.19113	0.445778	0.0611916	0.14326	0	0.0968835	0	1.04665	0.675128	1.44725	0.901666	6.9026	8.42913	1.42198	0.863433	1.94159	1.75966
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062627 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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