TCONS_00062641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062641
Unique NameTCONS_00062641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length600

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062641 ID=TCONS_00062641|Name=TCONS_00062641|organism=Clytia hemisphaerica|type=transcript|length=600bp
GTCAGAATTTTTGACTAGACGTTACATCTAGAGAAAGGGACCGCTTAATC
GTTCTTTCAAATATGGTTTGCAGAAACCACAGTTTCTCTAGGTGTTGCAC
TACCACTTTGCAGTTTGATAACGTTATCAACACCAAGCAGAGGGTTTGAG
GAGACTTCAGCTAGCGTcttcaaatcatcaaaaatttgaTCAGGTTGACT
TTCAGGTAAACTTAACAAGGATTGTACGACTTCTTTCTCAGCACTGAAAT
TCTcgtttaaaaattgataaatatcTTGATCGGTAATCATTGGAGGGGAT
TTCGGCGATGATGTATTTGTCGGGTGAATTGCCGGCTTCTCGTCGGGAAC
GATCGGAAATTTGTCGGGTGTTGTCGGTAAAGCATAATCATGCTCGCTTG
ATGTATTTGGTAAATCGGTAACTGAGTAGAGAATGGGTTCGGTGGTTGAA
TCATTGTTGGTCGTGTTTGGTGGATTGTCTGAGATGTGTAAATTTTCGGT
TGTAGGATCTGCTACCATTGGTTGATGAGTTTGTTGTGGTGAAGAAGTGC
GAGGTACAGGTGGCGAACTTTTGACGTTTTGCTCAATAATCTGGCTGAAA
Run BLAST on NCBI

transcript from alignment at scaffold_370:328840..329499-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062641 ID=TCONS_00062641|Name=TCONS_00062641|organism=Clytia hemisphaerica|type=transcript|length=660bp|location=Sequence derived from alignment at scaffold_370:328840..329499- (Clytia hemisphaerica)
GTCAGAATTTTTGACTAGACGTTACATCTAGAGAAAGGGACCGCTTAATC
GTTCTTTCAAATATGGTTTGCAGAAACCACAGTTTCTCTAGGTGTTGCAC
TACANTAATCGTTCTTTCAAATATGGTTTACAGAAACCACAGTTTCTCTA
GGTGTTGCATTACCACTTTGCAGTTTGATAACGTTATCAACACCAAGCAG
AGGGTTTGAGGAGACTTCAGCTAGCGTCTTCAAATCATCAAAAATTTGAT
CAGGTTGACTTTCAGGTAAACTTAACAAGGATTGTACGACTTCTTTCTCA
GCACTGAAATTCTCGTTTAAAAATTGATAAATATCTTGATCGGTAATCAT
TGGAGGGGATTTCGGCGATGATGTATTTGTCGGGTGAATTGCCGGCTTCT
CGTCGGGAACGATCGGAAATTTGTCGGGTGTTGTCGGTAAAGCATAATCA
TGCTCGCTTGATGTATTTGGTAAATCGGTAACTGAGTAGAGAATGGGTTC
GGTGGTTGAATCATTGTTGGTCGTGTTTGGTGGATTGTCTGAGATGTGTA
AATTTTCGGTTGTAGGATCTGCTACCATTGGTTGATGAGTTTGTTGTGGT
GAAGAAGTGCGAGGTACAGGTGGCGAACTTTTGACGTTTTGCTCAATAAT
CTGGCTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039256XLOC_039256Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062641-exon-scaffold_370-1575043694:329397..329499TCONS_00062641-exon-scaffold_370-1575043694:329397..329499Clytia hemisphaericaexon
TCONS_00062641-exon-scaffold_370-1575043694:328840..329336TCONS_00062641-exon-scaffold_370-1575043694:328840..329336Clytia hemisphaericaexon
TCONS_00062641-exon-scaffold_370-1510915933:329397..329499TCONS_00062641-exon-scaffold_370-1510915933:329397..329499Clytia hemisphaericaexon
TCONS_00062641-exon-scaffold_370-1510915933:328840..329336TCONS_00062641-exon-scaffold_370-1510915933:328840..329336Clytia hemisphaericaexon
TCONS_00062641-exon-scaffold_370-1491911889:329397..329499TCONS_00062641-exon-scaffold_370-1491911889:329397..329499Clytia hemisphaericaexon
TCONS_00062641-exon-scaffold_370-1491911889:328840..329336TCONS_00062641-exon-scaffold_370-1491911889:328840..329336Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_370supercontigscaffold_370:328840..329499 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.118939	0.0528523	0	0	0.623464	1.11594	0.768907	0.979046	0.276384	0.727272	0.149075	0.619003	0.224974	0.427476	0.0976289	0.82576	0.265728	0.180018	0	0	0	0.86099	0.00218149	0.126284	17.5355	10.1807	0.207816	0	0.168217	0.276488
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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