TCONS_00062659 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062659
Unique NameTCONS_00062659
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length331

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062659 ID=TCONS_00062659|Name=TCONS_00062659|organism=Clytia hemisphaerica|type=transcript|length=331bp
CACAAGGGCGCGAAGCACCTGAAATGTAGCCCAGATTACAAAAAAACCTA
GCATACCTGAAAAAGCAGAGGTCGATCATCAGGGCAATGTTCAATAACCA
GTTTCCTGTACTTTGGATCTCTGGAAAAGATACCAGCATGCCACATTGGT
GTGTAACAAAGATGCACACCCAATTCTCTTGACATTTTTCTGAACGGTAA
TTCTGATTGGTCAACCATTGGTGCTAAAACATGTTTAGGTGAACCGAGAA
CCtctttgtaaaatttgtatccTTCGTTTTCTTCAGCCATTTTAATGTTG
TGTGATTTATAATTGtatctttttgttgttt
Run BLAST on NCBI

transcript from alignment at scaffold_370:277978..278308

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062659 ID=TCONS_00062659|Name=TCONS_00062659|organism=Clytia hemisphaerica|type=transcript|length=331bp|location=Sequence derived from alignment at scaffold_370:277978..278308 (Clytia hemisphaerica)
aaacaacaaaaagataCAATTATAAATCACACAACATTAAAATGGCTGAA
GAAAACGAAggatacaaattttacaaagaGGTTCTCGGTTCACCTAAACA
TGTTTTAGCACCAATGGTTGACCAATCAGAATTACCGTTCAGAAAAATGT
CAAGAGAATTGGGTGTGCATCTTTGTTACACACCAATGTGGCATGCTGGT
ATCTTTTCCAGAGATCCAAAGTACAGGAAACTGGTTATTGAACATTGCCC
TGATGATCGACCTCTGCTTTTTCAGGTATGCTAGGTTTTTTTGTAATCTG
GGCTACATTTCAGGTGCTTCGCGCCCTTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039271XLOC_039271Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062659-exon-scaffold_370-1491911889:277978..278308TCONS_00062659-exon-scaffold_370-1491911889:277978..278308Clytia hemisphaericaexon
TCONS_00062659-exon-scaffold_370-1510915933:277978..278308TCONS_00062659-exon-scaffold_370-1510915933:277978..278308Clytia hemisphaericaexon
TCONS_00062659-exon-scaffold_370-1575043694:277978..278308TCONS_00062659-exon-scaffold_370-1575043694:277978..278308Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_370supercontigscaffold_370:277978..278308 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.7238	10.4921	7.57278	7.08666	9.80378	13.0151	17.5715	15.0502	20.8289	16.3906	26.8097	22.659	24.3681	18.0761	10.0724	18.7833	15.9357	18.7948	6.49152	9.38068	10.9651	13.9881	20.0051	18.4906	17.4839	11.1457	11.5633	8.51082	11.6193	15.1266
Blast
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BLAST of TCONS_00062659 vs. Swiss-Prot (Human)
Match: DUS1L (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS1L PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.364e-22
Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = -3 
Query:   51 EGYKFYKEVLGSPKHVLAPMVDQSELPFRKMSRELGVHLCYTPMWHAGIFSRDPKYRK--LVIEHCPDDRPLLFQVC 275
            +G++F+   L   +HV+APMVDQSEL +R +SR  G  LCYTPM HA +F RD  YRK  L  E CP+DRPL+ Q C
Sbjct:    5 QGFEFWSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPEDRPLIVQFC 81
The following BLAST results are available for this feature:
BLAST of TCONS_00062659 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DUS1L2.364e-2254.55tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-li... [more]
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