TCONS_00062677 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062677
Unique NameTCONS_00062677
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length711

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062677 ID=TCONS_00062677|Name=TCONS_00062677|organism=Clytia hemisphaerica|type=transcript|length=711bp
GTCACTGAAGGTTTGAGTATTCACTAcatgcaaaaagaaaaatttgagca
AGCTAAAGCTATCAATGGAAGTGGATGACCAAGAGTCACAATCAAGAGTG
ATTGCACGTGACGTTGTTGCTTCACCAAAGGATATAAGAAAGGGGTATGC
ACAATATTGGCAAAAAANAGATAACCAATCCATTTTGTTTGTTCCTCAAG
AAGTGTATGGTTGGGAAAAAGTGAACAAATGTGACCATCAGGACCCATCC
ccaaaacaatcaaatcaaatttagGGAATTCTTGACCGGTAAACACTGAT
TTCATTTGTGTTTCATAATTTGCAGCGTCTTTTGTTAGATCACCAGTTTT
GGTCAACGTAAAAACATTCTCAGCTTTGATAGCACTTTGTTTGTCAATCA
ATCCATCCTTGATTGCTTTGTAGTTGCTATCTGGATGCTCTAGCTCAACA
TAGCGttcatcagaaaaaaagattttccattttgaaaaatcagttGCTTG
AGAATACtcatctttttgaaaagctgCACAAATCTTAGTTGCAGCACTAC
CTCCAGAAAATGCAATAGAAAAATAACCATGATTTTGAACAGACTCTTTA
GCTACTTCTGTTACCAATTTCCCAATTCGATTAAGATATTGTCCATTATC
TTTGTCAGTGCTTATTTGAGCCATTTTCTCTTCTAAgttaaattttaaat
tgaaatcTTTA
Run BLAST on NCBI

protein sequence of TCONS_00062677-protein

>TCONS_00062677-protein ID=TCONS_00062677-protein|Name=TCONS_00062677-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
KDFNLKFNLEEKMAQISTDKDNGQYLNRIGKLVTEVAKESVQNHGYFSIA
FSGGSAATKICAAFQKDEYSQATDFSKWKIFFSDERYVELEHPDSNYKAI
KDGLIDKQSAIKAENVFTLTKTGDLTKDAANYETQMKSVFTGQEFPKFDL
IVLGMGPDGHICSLFPNHTLLEEQTKWIGYXFFANIVHTPFLYPLVKQQR
HVQSLLIVTLGHPLPLIALACSNFSFCM
Run BLAST on NCBI

transcript from alignment at scaffold_371:326782..327492+

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062677 ID=TCONS_00062677|Name=TCONS_00062677|organism=Clytia hemisphaerica|type=transcript|length=711bp|location=Sequence derived from alignment at scaffold_371:326782..327492+ (Clytia hemisphaerica)
GTCACTGAAGGTTTGAGTATTCACTAcatgcaaaaagaaaaatttgagca
AGCTAAAGCTATCAATGGAAGTGGATGACCAAGAGTCACAATCAAGAGTG
ATTGCACGTGACGTTGTTGCTTCACCAAAGGATATAAGAAAGGGGTATGC
ACAATATTGGCAAAAAANAGATAACCAATCCATTTTGTTTGTTCCTCAAG
AAGTGTATGGTTGGGAAAAAGTGAACAAATGTGACCATCAGGACCCATCC
ccaaaacaatcaaatcaaatttagGGAATTCTTGACCGGTAAACACTGAT
TTCATTTGTGTTTCATAATTTGCAGCGTCTTTTGTTAGATCACCAGTTTT
GGTCAACGTAAAAACATTCTCAGCTTTGATAGCACTTTGTTTGTCAATCA
ATCCATCCTTGATTGCTTTGTAGTTGCTATCTGGATGCTCTAGCTCAACA
TAGCGttcatcagaaaaaaagattttccattttgaaaaatcagttGCTTG
AGAATACtcatctttttgaaaagctgCACAAATCTTAGTTGCAGCACTAC
CTCCAGAAAATGCAATAGAAAAATAACCATGATTTTGAACAGACTCTTTA
GCTACTTCTGTTACCAATTTCCCAATTCGATTAAGATATTGTCCATTATC
TTTGTCAGTGCTTATTTGAGCCATTTTCTCTTCTAAgttaaattttaaat
tgaaatcTTTA

Coding sequence (CDS) from alignment at scaffold_371:326782..327492+

>TCONS_00062677 ID=TCONS_00062677|Name=TCONS_00062677|organism=Clytia hemisphaerica|type=CDS|length=687bp|location=Sequence derived from alignment at scaffold_371:326782..327492+ (Clytia hemisphaerica)
CTAcatgcaaaaagaaaaatttgagcaAGCTAAAGCTATCAATGGAAGTG
GATGACCAAGAGTCACAATCAAGAGTGATTGCACGTGACGTTGTTGCTTC
ACCAAAGGATATAAGAAAGGGGTATGCACAATATTGGCAAAAAANAGATA
ACCAATCCATTTTGTTTGTTCCTCAAGAAGTGTATGGTTGGGAAAAAGTG
AACAAATGTGACCATCAGGACCCATCCccaaaacaatcaaatcaaattta
gGGAATTCTTGACCGGTAAACACTGATTTCATTTGTGTTTCATAATTTGC
AGCGTCTTTTGTTAGATCACCAGTTTTGGTCAACGTAAAAACATTCTCAG
CTTTGATAGCACTTTGTTTGTCAATCAATCCATCCTTGATTGCTTTGTAG
TTGCTATCTGGATGCTCTAGCTCAACATAGCGttcatcagaaaaaaagat
tttccattttgaaaaatcagttGCTTGAGAATACtcatctttttgaaaag
ctgCACAAATCTTAGTTGCAGCACTACCTCCAGAAAATGCAATAGAAAAA
TAACCATGATTTTGAACAGACTCTTTAGCTACTTCTGTTACCAATTTCCC
AATTCGATTAAGATATTGTCCATTATCTTTGTCAGTGCTTATTTGAGCCA
TTTTCTCTTCTAAgttaaattttaaattgaaatcTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039285XLOC_039285Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062677-proteinTCONS_00062677-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062677-exon-scaffold_371-1491911889:326782..327492TCONS_00062677-exon-scaffold_371-1491911889:326782..327492Clytia hemisphaericaexon
TCONS_00062677-exon-scaffold_371-1510915933:326782..327492TCONS_00062677-exon-scaffold_371-1510915933:326782..327492Clytia hemisphaericaexon
TCONS_00062677-exon-scaffold_371-1575043694:326782..327492TCONS_00062677-exon-scaffold_371-1575043694:326782..327492Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_371supercontigscaffold_371:326782..327492 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
32.9163	30.1331	57.376	55.8172	19.4617	13.8404	15.472	15.1135	12.1556	13.0394	7.41207	5.20993	4.70078	3.39128	4.84628	4.57235	12.1757	11.7487	2.30236	5.82044	9.09582	7.67989	20.9279	21.4911	7.13636	8.08117	13.4825	10.7312	19.3368	22.9166
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR0059006-phosphogluconolactonase_DevB
IPR006148Glc/Gal-6P_isomerase
Vocabulary: Biological Process
TermDefinition
GO:0006098pentose-phosphate shunt
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:00170576-phosphogluconolactonase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0006098 pentose-phosphate shunt
molecular_function GO:0017057 6-phosphogluconolactonase activity
Blast
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BLAST of TCONS_00062677 vs. Swiss-Prot (Human)
Match: 6PGL (6-phosphogluconolactonase OS=Homo sapiens GN=PGLS PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 3.520e-22
Identity = 46/153 (30.07%), Postives = 76/153 (49.67%), Query Frame = -2 
Query:  174 IGKLVTEVAKESVQN-HGYFSIAFSGGSAATKICAAFQKDEYSQAT-DFSKWKIFFSDERYVELEHPDSNYKAIKDGLIDKQSAIKAENVFTLTKTGDLTKDAANYETQMKSVFTGQEFPKFDLIVLGMGPDGHICSLFPNHTLLEEQTKWIG 626
            + +LV + A   +      F++  SGGS  + +                ++W + F DER V  +H +S Y   +  L+ +   I    V T+     + + A +Y  +++  F G   P FDL++LG+GPDGH CSLFP+H LL+E+ K + 
Sbjct:   22 LAQLVAQRAACCLAGARARFALGLSGGSLVSMLARELPAAVAPAGPASLARWTLGFCDERLVPFDHAESTYGLYRTHLLSRLP-IPESQVITINPELPVEEAAEDYAKKLRQAFQGDSIPVFDLLILGVGPDGHTCSLFPDHPLLQEREKIVA 173
The following BLAST results are available for this feature:
BLAST of TCONS_00062677 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
6PGL3.520e-2230.076-phosphogluconolactonase OS=Homo sapiens GN=PGLS ... [more]
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