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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062698 ID=TCONS_00062698|Name=TCONS_00062698|organism=Clytia hemisphaerica|type=transcript|length=5198bpRun BLAST on NCBI transcript from alignment at scaffold_371:477784..509932+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062698 ID=TCONS_00062698|Name=TCONS_00062698|organism=Clytia hemisphaerica|type=transcript|length=32149bp|location=Sequence derived from alignment at scaffold_371:477784..509932+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00062698 vs. Swiss-Prot (Human)
Match: CAPS1 (Calcium-dependent secretion activator 1 OS=Homo sapiens GN=CADPS PE=1 SV=3) HSP 1 Score: 1222.61 bits (3162), Expect = 0.000e+0 Identity = 630/1247 (50.52%), Postives = 839/1247 (67.28%), Query Frame = 1
Query: 379 EDSEHKRRLQLYVFVSRCIAYPFNAKQPTDMARRQSKVTKQNLASIKDRFLSFLNGKTSIVADEAFKNAVQSYYDTFLCCDRVHKMVNSGGYSSNDFREIFKANIEKRVRILPDIEGLSKETVLSSWMAKFDAIYRGDDDQKRTPGGRLAATAASELILSKEQLYEMFQTILGVKHYEHQILFNACQLDNADEQSAFIRRELHSRQKILTQLSKE-NMPRFIHKNMEEIYVEEQKTMIKQLMSIHLEAFPVTKGGLDAKSALYKMKRAQNNQISIMDVNDDNDAILNKALSGLTYELKVTVVEASGLKVLPHNRIVFVVMELDGGEKLSTDQAEAGRPLWETQGEWATNQPLCLLKLRLMAEQTGMLHISDDKELASVTLTPFCGM-SENKWYKMTPNKGWNNNEEIKLKLSLSMDKPTNVKKSGFLYAKGLTFWKTWKRRFFMLIQVSQYKFVLCSYRVKKQSPKEVMVVEGYTADFADKIPELEGGRFFFNMVKAGDEVMFAAEEDHDQMNWIYKLYTATGQSYRPALPTKMGGSSGIVGTDPSIQKVKGDM--DRALKHGLGGIVQADPFELNQAADTFSTLQRLTLLHRLNDSYTCLGWFSPGQVFVLDEYCARYGVRGCHRHLCYLTDLLERAEAGIMIDPTLLHYSYAFCSSHVVGNRPDGVNTVTVDEKERFEEIKDRLRAYLSNQITHFRYCFPFGRPEGALKSTLTLFERVLSKDTTMPSADPEDSDDVKEAIRTCLRKAALVNYTRLSNYAKVPDMFHDT-------SPKEKLEIILQLAELCIELIQQNEEHHA-------EALAWYNELMMEHTEIFWSLFAVDMDDSLDVQPRDTWDSFALFQMLNNYLRMESPLRGGKFHEHLTEKFAPLVVRYIDLMESSIARSVDKGFQRENYHPV-------------------------------------------------GHGCATSEDIFWKLRSLQTFIHDLHWPDEVFADHMMNRLKLMAADMTTACLDRILIDMGRAL-IGGVNLDYIVPPSVCVMINVIDYADEQSTILCTSEQNGTEEYKYHGNINEVVENAKQASIKMVVDKLSVCLNDLLKKLSRYDQGTI-----------SSKFFNLLGPREETANDFVQFICNNIDQFHDESTGINEMPYINSLEKALWERMCEPLCQWLVERPEMAVYQYTVLSTIIELVRT---ELEKEGLTTDDLENANYKAAYNKLQVEEAMLNIESSSSI 3873
E+ E K+RLQLYVFV RCIAYPFNAKQPTDMARRQ K++KQ L ++KDRF +FLNG+T I+ADEAF NAVQSYY+ FL DRV +MV SGG S+ND RE+FK +IEKRVR LP+I+GLSKETVLSSWMAKFDAIYRG++D R R+ A+AASELILSKEQLYEMFQ ILG+K +EHQ+L+NACQLDN DEQ+A IRREL R ++ Q+++E P+F+ K ME +Y+EE K+ + LM+ +LE+ PV+KGG + L K+KR+ N SI+D+ ++++ L+K+ L++ L+V ++E GLK L NRIV+ ME++GGEKL TDQAEA +P W TQG+++T L +K++L E TG+L + +DKEL V L P +++W+KMT +K + +++K+KL++ MDKP N+K SG+L+A G WK WK+RFF+L+QVSQY F +CSYR KK P+E++ ++GYT D+ D P LEGGR FFN VK GD V+FA++++ D++ W+ +Y ATGQS++P PT++ + G P + DRA KHG+ + ++P + A+ F +QRLTL HRLNDSY+CLGWFSPGQVFVLDEYCAR GVRGCHRHLCYL DLLERAE G MIDPTLLHYS+AFC+SHV GNRPDG+ TVTV+EKERFEEIK+RLR L NQITHFRYCFPFGRPEGALK+TL+L ERVL KD P E VK IR CL +AALVNY+RLS YAK+ + D +P +KLE ++LAEL IE++QQNEEHHA EA AW+++LM+EH E F SLFAVDMD +L+VQP DTWDSF LFQ+LN++LR + L GKFH+HL + FAPLVVRY+DLMESSIA+S+ +GF+RE++ PV +G TSED+FWKL +LQTFI DLHWP+E F H+ RLKLMA+DM +C+ R I L + D+ VP S+C M NV+ A QST LC+ E +E++YH I+E++E + I ++V K L +L KLSRYD+GT+ +SK+ ++ P + A+ +V F+ ++ D D+ +NE YI L + +C WL +R ++ ++ Y L T+I +V+ + +G+ L + Y+ N+L VEEA ++ +
Sbjct: 111 EEEERKKRLQLYVFVMRCIAYPFNAKQPTDMARRQQKISKQQLQTVKDRFQAFLNGETQIMADEAFMNAVQSYYEVFLKSDRVARMVQSGGCSANDSREVFKKHIEKRVRSLPEIDGLSKETVLSSWMAKFDAIYRGEED-PRKQQARMTASAASELILSKEQLYEMFQNILGIKKFEHQLLYNACQLDNPDEQAAQIRRELDGRLQMADQIARERKFPKFVSKEMENMYIEELKSSVNLLMA-NLESMPVSKGG---EFKLQKLKRSHN--ASIIDMGEESENQLSKSDVVLSFSLEVVIMEVQGLKSLAPNRIVYCTMEVEGGEKLQTDQAEASKPTWGTQGDFSTTHALPAVKVKLFTESTGVLAL-EDKELGRVILHPTPNSPKQSEWHKMTVSKNCPD-QDLKIKLAVRMDKPQNMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQSHKPVPPTQVQKLNAKGGNVPQLDAPISQFYADRAQKHGMDEFISSNPCNFDHAS-LFEMVQRLTLDHRLNDSYSCLGWFSPGQVFVLDEYCARNGVRGCHRHLCYLRDLLERAENGAMIDPTLLHYSFAFCASHVHGNRPDGIGTVTVEEKERFEEIKERLRVLLENQITHFRYCFPFGRPEGALKATLSLLERVLMKDIVTPVPQEE----VKTVIRKCLEQAALVNYSRLSEYAKIEENQKDAENVGRLITPAKKLEDTIRLAELVIEVLQQNEEHHAEPHVDKGEAFAWWSDLMVEHAETFLSLFAVDMDAALEVQPPDTWDSFPLFQLLNDFLRTDYNLCNGKFHKHLQDLFAPLVVRYVDLMESSIAQSIHRGFERESWEPVKSLTSNLPNVNLPNVNLPKVPNLPVNIPLGIPQMPTFSAPSWMAAIYDADNGSGTSEDLFWKLDALQTFIRDLHWPEEEFGKHLEQRLKLMASDMIESCVKRTRIAFEVKLQKTSRSTDFRVPQSICTMFNVMVDAKAQSTKLCSMEMG--QEHQYHSKIDELIEETVKEMITLLVAKFVTILEGVLAKLSRYDEGTLFSSFLSFTVKAASKYVDVPKPGMDVADAYVTFVRHSQDVLRDK---VNEEMYIERLFDQWYNSSMNVICTWLTDRMDLQLHIYQ-LKTLIRMVKKTYRDFRLQGVLDSTLNSKTYETIRNRLTVEEATASVSEGGGL 1337 The following BLAST results are available for this feature:
BLAST of TCONS_00062698 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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