TCONS_00062715 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062715
Unique NameTCONS_00062715
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1143

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062715 ID=TCONS_00062715|Name=TCONS_00062715|organism=Clytia hemisphaerica|type=transcript|length=1143bp
acaggtctccgttttctcgagctaaaattttcattaatttttaaccctat
gatttttgcctgagaccgtcatatttgtccgaaaatcacaccaaagtgtc
cgaacaaaaattggaaacatagtaatttcgattcccctaccccttaggtt
tccaaaaatgtataacaagtgcttctaacaaaacagtcaagcgtttccaa
aaaatcgaacaaaattccccctactatattgACAAGGGGGTGTAGAGACC
TGTTTCGAAGGAGGTGGAACCTTCTTTTTACCATACCAAAAAGTGTATCA
TGATTCTCTGGGTTTTGGTGTATAGACGGTACGAAAAGTCATAGTTTTCA
ATCTAACTTCAAGAAGAAGAACTAGACAAAAGAATAAGAAACAATGATTT
CACAATATGGAAGAAATGTCAAAGTCAAGAGTTTGAACAGAATCTTCAGT
AAAACTAACAAACACTCACAAAAGAACAAACCCTAGATAAACAATCGACT
GTTGAATCAACATGATAAAAAAATGTATCAGGATAAAAGATCACAATTAT
TTCTTCACAACCGGAGATGAAACAAGTCATCGCTGTAATGTTTTTAACAC
TCTCGATTATCGCTACCAGCCTGATTTTGCAGTCCAACGCTCATGGCTTG
AGTTACAATTACTATGATGAAATTGCACAATCTTACTGCGCAAGTCGGTA
CAAACAACCAGCTTTTATTTTCGCTATCAGAAGAGATTGTGCTGGAGTGG
GACCCCCTTGTattgaaatttgcaaaaaagcaACTCCGGAAGCCATCAAA
ACGATCAATTACCAACAAAAAAACCTTGCTTGTTTCGATGCACTGAGcat
aaacaaaaaacacaatCATCTTGCTATCGACACCACTAGTCGACAACCAG
ATGCTGGGCGGGTTGCTATGACAACCTATGGTTACGGAATGGGTGGCTGT
GTATGGAAAGCAAATCATTGTGGACCCAACTATTGTTGTTGTAGGGCTTA
TTGATCGGAGCTTTCAAATATCacaatttgattaattttttcaatactTT
ATTCTGCTCTATCCTGAcagtttttgaaatgaaaaaattaaagccCAAAT
TATGACAAtactttgaatttatttttgatccTGCTTACTTTAG
Run BLAST on NCBI

transcript from alignment at scaffold_371:74876..76392-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062715 ID=TCONS_00062715|Name=TCONS_00062715|organism=Clytia hemisphaerica|type=transcript|length=1517bp|location=Sequence derived from alignment at scaffold_371:74876..76392- (Clytia hemisphaerica)
ACAGGTCTCCGTTTTCTCGAGCTAAAATTTTCATTAATTTTTAACCCTAT
GATTTTTGCCTGAGACCGTCATATTTGTCCGAAAATCACACCAAAGTGTC
CGAACAAAAATTGGAAACATAGTAATTTCGATTCCCCTACCCCTTAGGTT
TCCAAAAATGTATAACAAGTGCTTCTAACAAAACAGTCAAGCGTTTCCAA
AAAATCGAACAAAATTCCCCCTACTATATTGACAAGGGGGTGTAGAGACC
TGTTTCGAAGGAGGTGGAACCTTCTTTTTACCATACCAAAAAGTGTATCA
TGATTCTCTGGGTTTTGGTGTATAGACGGTACGAAAAGTCATAGTTTTCA
ATCTAACTTCAAGAAGAAGAACTAGACAAAAGAATAAGAAACAATGATTT
CACAATATGGAAGAAATGTCAAAGTCAAGAGTTTGAACAGAATCTTCAGT
AAAACTAACAAACACTCACAAAAGAACAAACCCTAGATAAACAATCGACT
GTTGAATCAACATGATAAAAAAATGTATCAGGATAAAAGATCACAATTAT
TTCTTCACAACCGGAGATGAAACAAGTCATCGCTGTAATGTTTTTAACAC
TCTCGATTATCGCTACCAGCCTGATTTTGCAGTCCAACGCTCATGGCTTG
AGTTACAATTACTATGATGAAATTGCACAATCTTACTGCGCAAGTCGGTA
CAAACAACCAGCTTTTATTTTCGCTATCAGAAGAGATTGTGCTGGAGTGG
GACCCCCTTGTATTGAAATTTGCAAAAAAGCAACTCCGGAAGCCATCAAA
ACGATCAATTACCAACAAAAAAAGTGAGTCCATGGGATTTGACGATATAT
ATTTTTTTAATGACCCTGAATAAAAGCATCTGCATCAATCGCCCCCTGAC
ACAGTACATTTTTATCAGAATTCTTTTAATAATACCCCTGGCCCATATAT
CTTCCACGTACCCTCTGAACGGTTTAATTATGGAAGAGCTCAATCTACTT
TTTGATCCCATGAAAATTTTCCATCTTAAGTATTCCCTGAAATTAGAGTA
CTGTTGCTATTGTTTTTAGAAAAGGCGCTTTAGTTTTAGATTAGCTAGAC
CGATAGAGGTTGAGGTTTCCCATGTTGAACTGGGCTGAATGTAATTCAAG
CTCGGAATTGGAACGTTAGTATTTCCACAAACTTCCTTCTATTTCAGCCT
TGCTTGTTTCGATGCACTGAGCATAAACAAAAAACACAATCATCTTGCTA
TCGACACCACTAGTCGACAACCAGATGCTGGGCGGGTTGCTATGACAACC
TATGGTTACGGAATGGGTGGCTGTGTATGGAAAGCAAATCATTGTGGACC
CAACTATTGTTGTTGTAGGGCTTATTGATCGGAGCTTTCAAATATCACAA
TTTGATTAATTTTTTCAATACTTTATTCTGCTCTATCCTGACAGTTTTTG
AAATGAAAAAATTAAAGCCCAAATTATGACAATACTTTGAATTTATTTTT
GATCCTGCTTACTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039295XLOC_039295Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062715-exon-scaffold_371-1575043694:75570..76392TCONS_00062715-exon-scaffold_371-1575043694:75570..76392Clytia hemisphaericaexon
TCONS_00062715-exon-scaffold_371-1575043694:74876..75195TCONS_00062715-exon-scaffold_371-1575043694:74876..75195Clytia hemisphaericaexon
TCONS_00062715-exon-scaffold_371-1510915933:75570..76392TCONS_00062715-exon-scaffold_371-1510915933:75570..76392Clytia hemisphaericaexon
TCONS_00062715-exon-scaffold_371-1510915933:74876..75195TCONS_00062715-exon-scaffold_371-1510915933:74876..75195Clytia hemisphaericaexon
TCONS_00062715-exon-scaffold_371-1491911889:75570..76392TCONS_00062715-exon-scaffold_371-1491911889:75570..76392Clytia hemisphaericaexon
TCONS_00062715-exon-scaffold_371-1491911889:74876..75195TCONS_00062715-exon-scaffold_371-1491911889:74876..75195Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_371supercontigscaffold_371:74876..76392 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.17231	1.06926	1.01889	1.02015	0.417447	0.305441	0.570253	0.70666	0.409694	0.611836	0.326637	0.100345	0.395854	0.345884	17.837	40.5832	7.6412	6.63889	4.87635	2.59392	0.66262	0.75666	35.5864	22.9583	6.49193	7.86053	1.52038	2.31915	132.228	186.169
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062715 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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