|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062716 ID=TCONS_00062716|Name=TCONS_00062716|organism=Clytia hemisphaerica|type=transcript|length=1592bpRun BLAST on NCBI transcript from alignment at scaffold_371:74876..102872- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062716 ID=TCONS_00062716|Name=TCONS_00062716|organism=Clytia hemisphaerica|type=transcript|length=27997bp|location=Sequence derived from alignment at scaffold_371:74876..102872- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00062716 vs. Swiss-Prot (Human)
Match: HFM1 (Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1 PE=1 SV=2) HSP 1 Score: 402.905 bits (1034), Expect = 1.512e-125 Identity = 189/341 (55.43%), Postives = 247/341 (72.43%), Query Frame = 3
Query: 255 RLIRILFLQKSHFFL*VHLLGDDVRGATMEAVVSRMKTIQVAINSEKEDSNSPAMRFLAISATIPNVNDIGSWLDTGLLPAVTFSLGDDYRPVQLRKIVLGYPCSAKQSDFKFDLALNYKLSNIIQTYSENKPTLIFGNTRKGVSQAAGILVKDARFVMNAQHKQTLTRYANIIHDSKLQELVIQGVGFHHAGLDNDDRKNVEELFLNGHLPVLFCTSTLAMGVNLPAHLVIIKGTMYYGMGGFIEYSEAQIFQMIGRAGRPQFDTSATAVIMTKQQNKEKYQNLISGTQQIESSLHLHLTEHINAEIVLGTITDSNIAQEWLKSTFLYVRMCENPKFYAL 1277
+L+R+ + + VH++ D+ RG T+E VVSRMKT+Q + K S + MRF+A+SATIPN DI WL G PAV + + +RPV+L+K+VLG+PCS+ Q++FKFDL LNYK++++IQ YS+ KPTL+F TRKGV QAA +LVKDA+F+M + KQ L +YA + DSKL++++ G +HHAG++ DRK VE F G LPVLF TSTLAMGVNLPAHLV+IK TM+Y G F EYSE I QMIGRAGRPQFDT+ATAVIMT+ ++KY +++ +ESSLH HL EH+NAEIVL TITD NIA EW++ST LY+R +NP Y
Sbjct: 403 QLVRLFLIDE------VHIVKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTAIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVVLGFPCSSNQTEFKFDLTLNYKIASVIQMYSDQKPTLVFCATRKGVQQAASVLVKDAKFIMTVEQKQRLQKYAYSVRDSKLRDILKDGAAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGLFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTRDKYIQMLACRDTVESSLHRHLIEHLNAEIVLHTITDVNIAVEWIRSTLLYIRALKNPSHYGF 737 The following BLAST results are available for this feature:
BLAST of TCONS_00062716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.