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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062718 ID=TCONS_00062718|Name=TCONS_00062718|organism=Clytia hemisphaerica|type=transcript|length=1823bpRun BLAST on NCBI protein sequence of TCONS_00062718-protein >TCONS_00062718-protein ID=TCONS_00062718-protein|Name=TCONS_00062718-protein|organism=Clytia hemisphaerica|type=polypeptide|length=507bp FLNKTVPPETPANLQLQVGNDDDGSHNLKSIHEIPEKYRSIFPFAYFNALRun BLAST on NCBI transcript from alignment at scaffold_371:74876..106390- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062718 ID=TCONS_00062718|Name=TCONS_00062718|organism=Clytia hemisphaerica|type=transcript|length=31515bp|location=Sequence derived from alignment at scaffold_371:74876..106390- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_371:74876..106390- >TCONS_00062718 ID=TCONS_00062718|Name=TCONS_00062718|organism=Clytia hemisphaerica|type=CDS|length=27432bp|location=Sequence derived from alignment at scaffold_371:74876..106390- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062718 vs. Swiss-Prot (Human)
Match: HFM1 (Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1 PE=1 SV=2) HSP 1 Score: 606.675 bits (1563), Expect = 0.000e+0 Identity = 286/484 (59.09%), Postives = 360/484 (74.38%), Query Frame = 3
Query: 66 DDGSHNLKSIHEIPEKYRSIFP-FAYFNALQSKVFDEVMYSDNPMVICAPTGSGKTAIFEMSIIRLLFSTTN--FTYKIVYLAPIKALCSERYQDWTSKFGPFGLKCTELTGDTDIDDFQELHKAHIVFTTPEKWDSMTRRWRDQKSLVQTVRLFLIDEVHLLGDDVRGATMEAVVSRMKTIQVAINSEKEDSNSPAMRFLAISATIPNVNDIGSWLDTGLLPAVTFSLGDDYRPVQLRKIVLGYPCSAKQSDFKFDLALNYKLSNIIQTYSENKPTLIFGNTRKGVSQAAGILVKDARFVMNAQHKQTLTRYANIIHDSKLQELVIQGVGFHHAGLDNDDRKNVEELFLNGHLPVLFCTSTLAMGVNLPAHLVIIKGTMYYGMGGFIEYSEAQIFQMIGRAGRPQFDTSATAVIMTKQQNKEKYQNLISGTQQIESSLHLHLTEHINAEIVLGTITDSNIAQEWLKSTFLYVRMCENPKFYAL 1508
++G +LK++ EIP K+RSIF F YFN +QSK FD+++Y+D VICAPTGSGKT +FE++I RLL KIVY+APIKALCS+R+ DW KFGP GL C ELTGDT +DD E+ AHI+ TTPEKWDSMTR+WRD SLVQ VRLFLIDEVH++ D+ RG T+E VVSRMKT+Q + K S + MRF+A+SATIPN DI WL G PAV + + +RPV+L+K+VLG+PCS+ Q++FKFDL LNYK++++IQ YS+ KPTL+F TRKGV QAA +LVKDA+F+M + KQ L +YA + DSKL++++ G +HHAG++ DRK VE F G LPVLF TSTLAMGVNLPAHLV+IK TM+Y G F EYSE I QMIGRAGRPQFDT+ATAVIMT+ ++KY +++ +ESSLH HL EH+NAEIVL TITD NIA EW++ST LY+R +NP Y
Sbjct: 255 ENGLGSLKAVTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNIKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDN-SLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTAIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVVLGFPCSSNQTEFKFDLTLNYKIASVIQMYSDQKPTLVFCATRKGVQQAASVLVKDAKFIMTVEQKQRLQKYAYSVRDSKLRDILKDGAAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGLFEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTRDKYIQMLACRDTVESSLHRHLIEHLNAEIVLHTITDVNIAVEWIRSTLLYIRALKNPSHYGF 737 The following BLAST results are available for this feature:
BLAST of TCONS_00062718 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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