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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062720 ID=TCONS_00062720|Name=TCONS_00062720|organism=Clytia hemisphaerica|type=transcript|length=1735bp
aaaaatgtgatttaTAATATCAATATAAGGAAAATACTGTATTGGTGGAG
GTAAAAGGGCTTTGAAGTCGTGATATTTTGATGGGATATGTGATTGGATA
GCTTTGAAATGGAAGATATGAAGCTATTCCCCTACTACTGAAAGACACGA
ACAGTCAAGCgaacaacaaaaccaaaaccaaaaatgCCAGCAATAACACC
TTCAACATTTGTGACCAATTTCAAATCCGTATTCGCTGGAAATGGAAACG
CACAATCTAATCCATCAATTAGACAAACAGAATACGTGAACAAGAAAATC
ATTtcagagactttattacaagaGTTAGAATTCCAAATCACTGAAAACGA
AAATTATgctaaagatttagaaaaacagaaaaataacgCATCTGGCCGTC
CTGATTATACATGGCTGATGGATAAACCGAAAACATATCGACTGCCTCCG
CTAACAAGATTGGAATTAGAGGAAATGTCAAAATATCTACACGTGGATGA
TGTGAGTTTGATTATACAGGAGTTTCGAGACGCTATAGACTACGATGTAG
CTGTAGATAAATTAGCAAATTACCTGAAGTTTATCATGAATCATCATATT
CACGAAAAGCGGAAGACTAAAAACAGCGACGAATATCAACGTTTACAATT
AACAACAACAAATTCGGCACCCGTTCGAAGTCAATCAAGTGCCATTatga
aacaaatcaaaatgaacACCTTATCACGCCCTTCGTCGGCGCCCTTAACA
AACACGTGGAAAAAACGGGTTAGGGTGCACCCTATGAACGCCCGCGAAAT
ATCAAATGATAAGTCAGATGCTGTTTATATTGACTTATCAGGACATACAC
AAAATGATaattttacagacccgaataacaattttacagaccagaatgat
GGTGATTCGATTGAGTATACAGAAGTTGTTGATATAGCTAATTCGTATGT
TTAACTTACAACTTTTACTTGTGCGGGATGGTTTATAgaagagtctccat
aactcaaacataCAAGGGGAATTGAAATTcaattcgagttatggaaaatt
TGAGTTTTGGAGACattagaaaagtttttttaactgaagggactaTAGTA
GGGGACCAATCCTTAGaatccgtgacatcttttatgcgacgcaacCACAT
GTAGCTAGTTCGAAAGTAGGaaggtttttttcaaattcgacttttgaaaa
acgtcaattttttactAACTTTTTTCCCTTACAGTTTTGTCTGTAAACGT
CAGTTTTTTagtcataaaaacttttgccggGCCTAATTCGCGggccccct
ctcaaaaaagtcttaaaaccCTTCCTACTTTCGAACTAGCTACATGCGgt
tgcgtcgcataaaagatgtcacggatccTAAGGATTGGTCCCCTTCGAGT
TGAGGAAACAACATATGAGTTATAAAGATTCGAGATGTAGTGACCCCGCC
TGTAATTCAATAAAGAATTCCAACTCAACCTGAATTCAATAAATCTTTTG
TCCCAAAACAATACCAAACAATAGACAAATCAAGCATACGAGTAGAATTC
CCTGTCTGGGAGTCATTTCATGTACATTTTTAATTTatgtatatttttgt
tttataaagaaaaatgaaattttaagagAAAACGAATCAGAAAAATGAGA
ATAatctaaaaatcttaaaatgctgtaaaaaaataacaatttttggatat
ttgctTTTATTTTAGTAGAATTTCACTGCGACAAT Run BLAST on NCBI protein sequence of TCONS_00062720-protein >TCONS_00062720-protein ID=TCONS_00062720-protein|Name=TCONS_00062720-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
MPAITPSTFVTNFKSVFAGNGNAQSNPSIRQTEYVNKKIISETLLQELEF
QITENENYAKDLEKQKNNASGRPDYTWLMDKPKTYRLPPLTRLELEEMSK
YLHVDDVSLIIQEFRDAIDYDVAVDKLANYLKFIMNHHIHEKRKTKNSDE
YQRLQLTTTNSAPVRSQSSAIMKQIKMNTLSRPSSAPLTNTWKKRVRVHP
MNAREISNDKSDAVYIDLSGHTQNDNFTDPNNNFTDQNDGDSIEYTEVVD
IANSYV Run BLAST on NCBI transcript from alignment at scaffold_371:142464..153839- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062720 ID=TCONS_00062720|Name=TCONS_00062720|organism=Clytia hemisphaerica|type=transcript|length=11376bp|location=Sequence derived from alignment at scaffold_371:142464..153839- (Clytia hemisphaerica)
AAAAATGTGATTTATAATATCAATATAAGGAAAATACTGTATTGGTGGAG
GTAAAAGGGCTTTGAAGTCGTGATATTTTGATGGGATATGTGATTGGATA
GCTTTGAAATGGAAGATATGAAGCTATTCCCCTACTACTGAAAGGTATGT
AGTTTTTCGTATTCCTTAACGAAATTTTAATTTTCCTTTTTTCACAATAT
TTTATATTTGATTTTGCACATTAGTCTGTTTACGTCAAGTTTCAGACGAA
AAGTCGAAAATGGCAATTGTCATCCTAAGGCTCTCATTTTATTTTTCAAA
TTCTTTGAATCTACTCAAAATTATCTTTCTACCGATGTCTTAATTACTTC
CAATGATAATATTTTTCACCCAAAAACAATTTCATAATTAATCAGCTGGC
AATTTTTTTCTGAACAAACATAGATGTAAGATTGCCTGATTCTGCCCAGG
AGGGAGGGGGGGGACTCGATTAAAAAATGACCGTACGTGGGGTCAAGAGA
AGGCCTTTGAACCCTTACAGTTACAGTTTAGAAAGAAAAAAAAGTAAAAT
TGAAACAGAAACAGAAATTTCATGAAGGAATCAGGAGTTATATTTTGGTT
GTTTTTGAAATATTTCGAGAAAAAAGAACTTAATCGGTCTTGTTGACCCA
CGCTTTGTATTGTGACGAGGTTGGTCCAAACCCTCTTATATTTTTCAATT
TTTAGTACTTACTTTTTTTGAGATGTAACACACCTCCGTTTTCACTGTTA
CGAGTTTCTGCTTATGTTGGTTTTCAGACTGGGCGTTTTTTACAGTATAA
TTATAGTTGATTTTGAGAGGGTATTAAGGTATTATATAGTGATAAGAAAC
CTTGACTTTCGGAGGCTTACGTGGGCTGAGTTACCTATCTGTGATATAAA
CTGCATTTAAATGGTATATTTACTTTTTTGGTGAGAAGAATTAGAGTTTA
GTTAAATTTTATATTTATTGGGTCTATTTTAGCTTGGAGTTCTTGCTAAG
AAACAAGATTATACGATTTTACACGTTTCTTTTTCCAGAAGAACAATTCA
GTTTTATAAGAACTTGAAACTTCATTTCGCCCAAAACCTAAGAACAAATT
AAGAAGCATTCCAGCTTTAAATTGAGAAACGACTTAAGCCCTTTTAAGCC
AAATAAGTGAACAAAATAAGTAAGAACAAATTAAGGACATTACAGACTAG
CATCAGAAAAAAATTACTGGTTCTAATAAAAAGTGTGCTAAGCATTATTT
TAAAAATATGGAAGATCTTCGACTTAACCTTGCAAAAGAAACAGCCAAAA
CAAATTAATTTGTNAAGATCTTCGACTTAACCTTGCAAAAGAAACAGCCA
AAACAAATTAATTTGTGTTTTTTTCCAAGAAGAGAGAAATGTACTTTTCG
TTTAAAAGTTATTTGCAGGAAAAAACGAGGAAGGAACAGCGGAGAAAAAA
ATGAGATTGGATGACTAGCTTCCTATCTATTTACAACAGAAAAATTGTTT
TTCTCTGATTACTCAGGCGAAAAGAAAATTTATTACAATTTTTTTTTCGA
TTAAAAGGAAATTGAATTTTCCGATTAACTTTTAAAGGCTGTGTTTTTGA
AATGAAGTGAGTCAAACTTCAGAATTATCTTTTTGTTTGAGAATTTGTGC
TGAGTTGCTGATTTATGATTTTGATGGTAAATTTTTTAAGGTATTTGAAT
TTTTTTTTAAATTTCTTTTCTAAGTTTTTAGATTTTCTTCACATTCCTGT
CTCAGTGACTTGCTGAGAACTTTCCAAATACCAATAATATGAAAAAGCGC
CTGATTTTAATGGGTCTGAATTTCAAGTTGAGCTGTCCACACAACACATT
TCTTTCATGACTTTCACAGTTGGGATAAGAATTAGAAAAAACTTTCTTCT
GGGCCAGATTATTAAAAAAAAATTAAAGACGATGAACAAAATTTTGTTCA
TTCTTGACGTTTCGATACTTCTTGTATCATGATCACAAGCAAATAGTTTG
CTTGCAAGCAGCAAGCAACACGCAGCTTTCAGCACGTTTTTTTCTAGGTT
CTGCTCAGCTATGTTGGATGTTTCCATCGGGAATCGGAAAGTTTAGCCCC
GTTAATACCGTAGCATATTACAAATACAAAAACATGCTTATCACGAATAA
GGAAGAGCAAGGAGGAGAAAAAAGGGGAAATTGTCTTCCTAGCTATCAAT
AATTAATCACAAACATTTTCGTGTTTGATATGAAAGTTGTGATACTTTTA
AAACATGCTATAATATTTGACTTTTTTTATCTCAAGAACAGTGTATCGTT
TTGCTCTGTTAAGTTTGGGCCTATTATCGAATATTTATTTTCAGTTTTAT
GAATTCAATATAATTTGTTTCCTACTACTACATGGAGTCAGTTATGGCCA
GTGTAATACAGTAATATATGTGTTTTATGTTAATACGATAAATTTTTACG
GGATAATATAAGTTTGCATTTAAACCATAATTTATACCTTCCATATCATG
TTTTATTTAATTTCTACTATGGCTTTTATTATGCTAGACTAATTCCTGTT
TACAAAATAATTTAATGGCTTTCTGTATTGATTTCTAGTTTCTAGTATGA
CCGCACCCTAAGATTAAGTGATTTAGTCCCGCTGCTGAGATCGAAAAAAG
TGGCTAGAAAACAATTTTCGTGACACACATCTTAGAACTAACTTTTTTTG
GTGGAAACTCACGAATTAGTATATGTATATTCCAAAATCAAAAAGTTTCC
ACGATATTATAAAAAATAAAAATATAAAAAAAAAAAATTAGACGTCAAAT
ATTTTTCTCGAGTTCAGACGTTCTTTTTGGAGCTCTGAGTTTTTTCAACA
GAATTTTTGAAATTTTTTCTCAAAAATTTAGAATTTTTGACCAATCTTTC
GAAAATTCTTTCACCATCAACCAAGATGAAGAAGATTCTTCGCAGTAGCC
GAGTCAGTCCACCATCACCATCACCCTCTGCATCNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACTCCATACTTTGGAGTACG
TCGAACAAAAAATGGACGCGAACATGGAGAAGTTCAAAGAGGATGTAGAA
ACACTGATCAAAACTGAGCTAAAATCCATTTTAATTAAGTCGTACGCTGA
CGCTACTAAGATCTCGGGAACATCCGAATCAAAACAAACAACAATGAAGG
AAGCATGGCGAGAGGAGGACGCGGAAGAGAACGATAAATTCAAAAGGTCT
TCCAACATCATTGTTCACGGATTAACTGAGCAAGAAACTAATGACGACCN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTAAATTATCGACTC
GAACACGTCCGAACAGGAGACACAAAGATGAGCTGATACCAAATTTTGGT
AAAGATGGATTCCGAGGCGCACAAACCAACTCGTTCTTCTACAGGAGTAT
ACCAAACTGGAATAGATTACCAAGATACGTTGTAGAGGCAAAGACTGTCA
AAACCTTTAAAGAAAGACTCAACGAAGCTTGGAAAAAACATCCGAAAAGA
TTCGAGACAAGACAATTGTAATCAAGATCCGGTTCTCAGAGGCCCTCGTG
TGCCTTGAACTTGTATACATTATTATTATTATTATTATTATTATTATCGT
GCAAGTAACGAGTAATTGGCGATTTTTTGGGGGTCTTCAAATTTAAAAAA
TACCTATATCACATGATAGAGCTCTTCAAACTGAGCAAAAAAGTGTATTA
CACCAAAGTCCCAACTTCTCTAGATCAAAAGTTATGGGCCTATTTGTGGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATAAATTTTGATCTA
GAGAAGTTGGGACTTTGGTGTAATACACTTTTTTGCTCAGTTTGAAGAGC
TCTATCATGTGATATAGGTCTTTTTTTAATTTGAAGACCCCCCAAATATC
ATTTCCAGGCCTAGCAATTTTGCCTGGAAACGTAAAAAATCGCCAATTAC
TCGTTACTTGCACGATAATATCGTGGAAACTTTTTGATTTTGGAATCTAC
ATATACTAATTCGCGAGTTTCCACCAAAAAAAGTTAGTTCTAAGATGTGT
GTCACGAAATGAAACATTGATCGACCTCAGCAGCGGGACTAATTAAGGCA
AGGAGTCTAATTTCTAAATAGGATCTACGCCTCTTCTAGTCTGAATAGCA
GACCTCTACAAAACCCCAGGTAGTACGCCTCTTCGAGGTCTCGTCTAATC
ATTCTTTCTTTACTTTGTAGAAGTTATATCTGATAAAATCAAAATTATTA
TATACGGTTAACCCTCTCTAAAATCCCTTAGGTGCTCGACTTAGACACCC
CCTTCTCACAGACCCGGTGGGATTTTTTCAGCCAGTGGGAACAAAAATAA
CAGAAAAAAGCTCGATGGGGATTGATATTTCCATATTTTTTATGGCTGGG
GATTTCAATTCTTTTCTTTTTTCAAGTAAGAAAATTCAGTGGGGATGGGG
AAAAATAGTAAATATTTTGCAGTAAGGATTAGTTTATTTGATGACTTTCA
GTGGGAACAAAAATTTGTGGATAATTTTCCACCGGGGACGATATTTTGGC
CAATTTTTCCAGTGGGTTTGTGAGAAGGGGGTGTACTTAGCTATAAAACC
GTATAAAATACTTTACGTAATCCGAATTTTTCTATAATTCGAAAAAATGT
TTTGAGCCCTTGAAATTCGAATTAGAGAGGGTCAACTGTGTATATTGTAT
GATACATTTACTTCATTATTTCATTCTGTCTTTAGACACGAACAGTCAAG
CGAACAACAAAACCAAAACCAAAAATGCCAGCAATAACACCTTCAACATT
TGTGACCAATTTCAAATCCGTATTCGCTGGAAATGGAAACGCACAATCTA
ATCCATCAATTAGACAAACAGAATACGTGAACAAGAAAATCATTTCAGAG
ACTTTATTACAAGAGTTAGAATTCCAAATCACTGAAAACGAAAATTATGC
TAAAGATTTAGAAAAACAGAAAAATAACGCATCTGGCCGTCCTGATTATA
CATGGCTGATGGATAAACCGAAAACATATCGACTGCCTCCGCTAACAAGA
TTGGAATTAGAGGAAATGTCAAAATATCTACACGTGGATGATGTGAGTTT
GATTATACAGGAGTTTCGAGACGCTATAGACTACGATGTAGCTGTAGATA
AATTAGCAAATTACCTGAAGTTTATCATGAATCATCATATTCACGAAAAG
CGGAAGACTAAAAACAGCGACGAATATCAACGTTTACAATTAACAACAAC
AAATTCGGCACCCGTTCGAAGTCAATCAAGTGCCATTATGAAACAAATCA
AAATGAACACCTTATCACGCCCTTCGTCGGCGCCCTTAACAAACACGTGG
AAAAAACGGGTTAGGGTGCACCCTATGAACGCCCGCGAAATATCAAATGA
TAAGTCAGATGCTGTTTATATTGACTTATCAGGACATACACAAAATGATA
ATTTTACAGACCCGAATAACAATTTTACAGACCAGAATGATGGTGATTCG
ATTGAGTATACAGAAGTTGTTGATATAGCTAATTCGTATGTTTAACTTAC
AACTTTTACTTGTGCGGGATGGTTTATAGAAGAGTCTCCATAACTCAAAC
ATACAAGGGGAATTGAAATTCAATTCGAGTTATGGAAAATTTGAGTTTTG
GAGACATTAGAAAAGTTTTTTTAACTGAAGGGACTATAGTAGGGGACCAA
TCCTTAGAATCCGTGACATCTTTTATGCGACGCAACCACATGTAGCTAGT
TCGAAAGTAGGAAGGTTTTTTTCAAATTCGACTTTTGAAAAACGTCAATT
TTTTACTAACTTTTTTCCCTTACAGTTTTGTCTGTAAACGTCAGTTTTTT
AGTCATAAAAACTTTTGCCGGGCCTAATTCGCGGGCCCCCTCTCAAAAAA
GTCTTAAAACCCTTCCTACTTTCGAACTAGCTACATGCGGTTGCGTCGCA
TAAAAGATGTCACGGATCCTAAGGATTGGTCCCCTTCGAGTTGAGGAAAC
AACATATGAGTTATAAAGATTCGAGATGTAGTGACCCCGCCTGTAATTCA
ATAAAGAATTCCAACTCAACCTGAATTCAATAAATCTTTTGTCCCAAAAC
AATACCAAACAATAGACAAATCAAGCATACGAGTAGAATTCCCTGTCTGG
GAGTCATTTCATGTACATTTTTAATTTATGTATATTTTTGTTTTATAAAG
AAAAATGAAATTTTAAGAGAAAACGAATCAGAAAAATGAGAATAATCTAA
AAATCTTAAAATGCTGTAAAAAAATAACAATTTTTGGATATTTGCTTTTA
TTTTAGTAGAATTTCACTGCGACAAT Coding sequence (CDS) from alignment at scaffold_371:142464..153839- >TCONS_00062720 ID=TCONS_00062720|Name=TCONS_00062720|organism=Clytia hemisphaerica|type=CDS|length=771bp|location=Sequence derived from alignment at scaffold_371:142464..153839- (Clytia hemisphaerica)
ATGCCAGCAATAACACCTTCAACATTTGTGACCAATTTCAAATCCGTATT
CGCTGGAAATGGAAACGCACAATCTAATCCATCAATTAGACAAACAGAAT
ACGTGAACAAGAAAATCATTTCAGAGACTTTATTACAAGAGTTAGAATTC
CAAATCACTGAAAACGAAAATTATGCTAAAGATTTAGAAAAACAGAAAAA
TAACGCATCTGGCCGTCCTGATTATACATGGCTGATGGATAAACCGAAAA
CATATCGACTGCCTCCGCTAACAAGATTGGAATTAGAGGAAATGTCAAAA
TATCTACACGTGGATGATGTGAGTTTGATTATACAGGAGTTTCGAGACGC
TATAGACTACGATGTAGCTGTAGATAAATTAGCAAATTACCTGAAGTTTA
TCATGAATCATCATATTCACGAAAAGCGGAAGACTAAAAACAGCGACGAA
TATCAACGTTTACAATTAACAACAACAAATTCGGCACCCGTTCGAAGTCA
ATCAAGTGCCATTATGAAACAAATCAAAATGAACACCTTATCACGCCCTT
CGTCGGCGCCCTTAACAAACACGTGGAAAAAACGGGTTAGGGTGCACCCT
ATGAACGCCCGCGAAATATCAAATGATAAGTCAGATGCTGTTTATATTGA
CTTATCAGGACATACACAAAATGATAATTTTACAGACCCGAATAACAATT
TTACAGACCAGAATGATGGTGATTCGATTGAGTATACAGAAGTTGTTGAT
ATAGCTAATTCGTATGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062720-exon-scaffold_371-1575043694:153696..153839 | TCONS_00062720-exon-scaffold_371-1575043694:153696..153839 | Clytia hemisphaerica | exon |
| TCONS_00062720-exon-scaffold_371-1575043694:142464..144054 | TCONS_00062720-exon-scaffold_371-1575043694:142464..144054 | Clytia hemisphaerica | exon |
| TCONS_00062720-exon-scaffold_371-1510915933:153696..153839 | TCONS_00062720-exon-scaffold_371-1510915933:153696..153839 | Clytia hemisphaerica | exon |
| TCONS_00062720-exon-scaffold_371-1510915933:142464..144054 | TCONS_00062720-exon-scaffold_371-1510915933:142464..144054 | Clytia hemisphaerica | exon |
| TCONS_00062720-exon-scaffold_371-1491911889:153696..153839 | TCONS_00062720-exon-scaffold_371-1491911889:153696..153839 | Clytia hemisphaerica | exon |
| TCONS_00062720-exon-scaffold_371-1491911889:142464..144054 | TCONS_00062720-exon-scaffold_371-1491911889:142464..144054 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_371 | supercontig | scaffold_371:142464..153839 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR028092 | RD3 |
Blast
The following BLAST results are available for this feature:
|
