|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062722 ID=TCONS_00062722|Name=TCONS_00062722|organism=Clytia hemisphaerica|type=transcript|length=5167bpRun BLAST on NCBI transcript from alignment at scaffold_371:155083..183375- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062722 ID=TCONS_00062722|Name=TCONS_00062722|organism=Clytia hemisphaerica|type=transcript|length=28293bp|location=Sequence derived from alignment at scaffold_371:155083..183375- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00062722 vs. Swiss-Prot (Human)
Match: ARIP4 (Helicase ARIP4 OS=Homo sapiens GN=RAD54L2 PE=1 SV=4) HSP 1 Score: 568.54 bits (1464), Expect = 1.372e-173 Identity = 315/631 (49.92%), Postives = 413/631 (65.45%), Query Frame = 2
Query: 2078 RDFDVYLI-DAQKTWPDRINTIDSWVENGGVLLIGYEMYRMLASGIKFP-----KLKGRKGKILL----EDKR-DLKKAMKEAICDPGPDLVVCDEGHRIRNYQSGISQSLKSINTSKRLVLTGYPLQNNLIEYWCMVDFVRPDYLGTRQEFANMFERPILNGQCVDSTTADKRLMRERAHVLFSLLQGFVQRRGHKVFKSILPDKYEHVIMVRMSPAQKALYQRLVELTREAYSD---SLNPIKTFHLCCKIWNHPDILYKAMQAASNGTAMXXXXXXXXXXXXXXXXXXXXXXXGKPPSKRKKMHHSNSPSXXXXXXXXXXXXXXXXXXEIGFNPFGGPDPRQILMDITQWAPEVFQNCGYKPGDVNNSGKFLILSQLIREAVAEDDKMLIFSQSLFTLNTIEEMLKKSAV---VESEPSGS-TWKKGEHYFRIDGSTTSYERERYINAFNEETNRKAKLFLLSTRAGCLGINLVGANRVVVFDVSWNPCHDAQAVCRVYRYGQVKPCYIYRLVASNTMEKKIYYRQISKQGISNRVVDEMNQTENFSKNEIQSLIAEDWVE-EPRPDFSHFVTSHCDRILSSIVLECSDWITQVPFKHESLLINDEETDKLTGSEKRAAKRAYEQQKQ 3913
R F V+++ D KT R + WV GGVLL+GYEMYR+L F K K R +++ ED++ + ++ ++A+C PGPD+V+CDEGHRI+N Q+ SQ+LK+I + +R+VLTGYPLQNNLIEYWCMVDFVRPD+LGTRQEF+NMFERPILNGQC+DST D RLMR R+HVL SLL+GFVQRRGH V K LP K E+VI+VR+S Q+ LY + ++ R+ S LNP+K F +CCKIWNHPD+LY+A+Q S D+ +E + PP K ++ L + +GFNPF R + +WA ++ N Y+ G + NS K ++L LI E+V DK+L+FSQSL TL IEE L K V +E G+ W + YFR+DGST ++ERER IN FN+ +N LFLLSTRAGCLG+NL+GANRVVVFD SWNPCHDAQAVCRVYRYGQ KPCYIYRLVA T+EKKIY RQISKQG+S+RVVD++N NF++ E+++L+ +VE EP P S V + +L L+ IT+ PF+HESLL+N ++ KLT +EK+AAK++YE+ K+
Sbjct: 369 RFFKVHILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLLTLKKSFATGRPKKTKKRSHPVIIDLDEEDRQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDRFRDCGSSGWLGLNPLKAFCVCCKIWNHPDVLYEALQKESLANEQDLDVEELGSAGTSARC---------PPQGTKGKGEDST-----LASSMGEATNSKFLQGVGFNPF---QERGNNIVTYEWAKDLLTN--YQTGVLENSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLNPMLNFTRKEVENLL--HFVEKEPAPQVSLNVKGIKESVLQLACLKYPHLITKEPFEHESLLLNRKD-HKLTKAEKKAAKKSYEEDKR 977 HSP 2 Score: 155.992 bits (393), Expect = 6.869e-38 Identity = 66/121 (54.55%), Postives = 90/121 (74.38%), Query Frame = 2
Query: 968 GLHTRDTFNKPEADGRVWINLNKKEFEEKVFLSKHISQILKPHQIGGLRFMFDNLIESVNEFRPNRGNGCILAHAMGLGKTIQTITFINLFLKCTPADRVLCVVPVNTIQNWSHEFNKWIP 1330
G H D N+ +A GRV +NLN EE VFL+ +++ +KPHQIGG+RF++DNL+ES+ F+ + G GCILAH+MGLGKT+Q I+FI++ + TPA VL +VPVNT+QNW EFN W+P
Sbjct: 232 GTHVNDVLNQRDALGRVLVNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVLFRHTPAKTVLAIVPVNTLQNWLAEFNMWLP 352 The following BLAST results are available for this feature:
BLAST of TCONS_00062722 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.