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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062730 ID=TCONS_00062730|Name=TCONS_00062730|organism=Clytia hemisphaerica|type=transcript|length=1643bpRun BLAST on NCBI protein sequence of TCONS_00062730-protein >TCONS_00062730-protein ID=TCONS_00062730-protein|Name=TCONS_00062730-protein|organism=Clytia hemisphaerica|type=polypeptide|length=435bp MKRLKRALSLTKSAPRIEESIAEIDEHSIKDSFLDPLNESPNGGIQFKTPRun BLAST on NCBI transcript from alignment at scaffold_371:289801..311373- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062730 ID=TCONS_00062730|Name=TCONS_00062730|organism=Clytia hemisphaerica|type=transcript|length=21573bp|location=Sequence derived from alignment at scaffold_371:289801..311373- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_371:289801..311373- >TCONS_00062730 ID=TCONS_00062730|Name=TCONS_00062730|organism=Clytia hemisphaerica|type=CDS|length=13050bp|location=Sequence derived from alignment at scaffold_371:289801..311373- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062730 vs. Swiss-Prot (Human)
Match: CDK17 (Cyclin-dependent kinase 17 OS=Homo sapiens GN=CDK17 PE=1 SV=2) HSP 1 Score: 465.692 bits (1197), Expect = 4.408e-158 Identity = 260/463 (56.16%), Postives = 329/463 (71.06%), Query Frame = 2
Query: 338 MKRLKRALSLT-KSAPRIEESIAE------IDEHSIKDSFLDPLNESPNGGIQFKTPTXXXXXXXXXXXXXXXXDKSATRTHSV----------------------------ASNDSGHGSGNELDNHKTSPVKYRQRKPFDKQTFEMRKKRMSLPANLNFMPEMLERQGQNPTSPF-AGMXXXXXXXXXXXXGYGKMSSYTKLDKLGEGTYATVFKGKSRLTDAIVALKEIRLEHEEGAPCTAIREVSLLKDLKHNNIVTLHDIIHTPKSLTLVFEYLERDLKSYMDDCGGIISLNNVKIFLFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYRACIDMWGVGCIFFEMVSGRPMFPGSTAENELTLIFKMLGTPSERNWPGINQNQSFIEGNYPNYRPEKLHNHVPRIEIDGLDLLKKFV 1618
MK+ KR LSLT + + I+ES++E I+E+S KD+ +P+ + NG + PTS + ++ T + R HSV + +S SG D ++ + + + + E KR+SLPA++ LE+ N + PF MSRR RR SLSE+G+GKM +Y KL+KLGEGTYATV+KG+S+LT+ +VALKEIRLEHEEGAPCTAIREVSLLKDLKH NIVTLHDI+HT KSLTLVFEYL++DLK YMDDCG I+S++NVK+FL+Q+LRGL+YCH+RK+LHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGS+EY IDMWGVGCIFFEM SGRP+FPGST E+EL LIF++LGTPS+ WPGI+ N+ F N+P Y+P+ L NH PR++ +G++L+ KF+
Sbjct: 1 MKKFKRRLSLTLRGSQTIDESLSELAEQMTIEENSSKDN--EPIVK--NG----RPPTSHSMHSFLHQYTGSFKKPPLRRPHSVIGGSLGSFMAMPRNGSRLDIVHENLKMGSDGESDQASGTSSDEVQSPTGVCLRNRIHRRISMEDLNKRLSLPADIRIPDGYLEKLQIN-SPPFDQPMSRRSRRASLSEIGFGKMETYIKLEKLGEGTYATVYKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEYLDKDLKQYMDDCGNIMSMHNVKLFLYQILRGLAYCHRRKVLHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDELHLIFRLLGTPSQETWPGISSNEEFKNYNFPKYKPQPLINHAPRLDSEGIELITKFL 454 The following BLAST results are available for this feature:
BLAST of TCONS_00062730 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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