TCONS_00062733 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062733
Unique NameTCONS_00062733
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length301

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062733 ID=TCONS_00062733|Name=TCONS_00062733|organism=Clytia hemisphaerica|type=transcript|length=301bp
AAAGCAAACAATGTCATCTAAACTGTTGTTCCTTCAAGAAAATGTGAGAT
GGGGACAGTTGGAGATCTGAAGAAAGAAATCGACCGATTGACTTTTGATC
TGCAACAGGCCTGTCTTGAGAAAGTACAAGCTGCTGAGTATGGTTTGGCA
GTTTTGGAAGAAAAGCAGCAGATCCAAGACAAGTATGAAGAGCTTGAAAA
AACATATgagaacaaaaacaaagaattaaGCCAAGCTGTTGAGGTATACC
CATAAGTTTAGACATTTTATAttgtaatcaaaacaaaaaaggacACAGAC
G
Run BLAST on NCBI

transcript from alignment at scaffold_371:350741..358254-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062733 ID=TCONS_00062733|Name=TCONS_00062733|organism=Clytia hemisphaerica|type=transcript|length=7514bp|location=Sequence derived from alignment at scaffold_371:350741..358254- (Clytia hemisphaerica)
AAAGCAAACAATGTCATCTAAACTGTTGTTCCTTCAAGGTAAATCCATTA
TATTATGAAGAAAAAGTAACCTTCTTTACCAAAGGCCTTCTCGAGAGTAT
TAGCCTTATTAATTTGTTATTCAGCTCTAGAGTTATCTTAAAAGTGGGTT
AATTTTGGTGTTTTAATTTGGCGAAGGATCAATTTTTGGAAATTGGCAGG
GATTTAAATTGGAGAATGGGAAGGTTTTAGGCCCTGGTAAACTGAAAAGT
ACGTTGTGTTTTACTAAACAATGCATATTGTCCATAGAATTTCTATCTTT
AAAAGATTTTGTTAAATTTTGCGGGAATTTAAATTGACGAATGACCGATT
CTTCTCAGCTTTAGCGGGAATTTAATTTGACGATTTTTGCCAATTCACAA
AGTTTAATTCATGCCAAAATTAATCCACTTCCCTTGACAATGGATGGTTT
AGTAGTCTTTCATTCTTACAGGAATAAGTTTGGTCCCTTTGAGACGGTTT
GGGGCTGTTTTTCCGCTGGGTTTGAGGCTTCTTAGTAGTGTGTCCGGCAA
AAACGTTCAGTTGATTACAATCTTGTACCCAGAGCCAATTGCACCACATT
TTGATTGACGTACTACAACCTTTCATGAGCGCTATCAGTAGCGAAAAAAA
AGAGCTTTTCATATGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNACCTCCTGGAATGTTAAAAGACTGTGCCACCGAGATATCCAAAC
CACTCGCTTATGTCATCAACATGTCCATCACTTCAGGAGAAGTTCCAACA
CTTTGGAAACAAGCTCTTGTCTCACCTATCCACAAATCCGGGATCAAAAA
ACCAGAAAATTTTAGGCCCATATCGATCTTGCCAACGTTTTCAAAAATAT
TGGAGAAAGCTGTTTGAAGCCAACTTTCTGACTTCCTCGAAAATAATAAC
CTACTGACCGATCGTCAATTTGGATACAGAAAAAACCGATCAACCAAAAT
TGCTAGTGCCCTACTGTTTGATGACATTAGATCTTCGATCGACAAAGGAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCTGTTTTTCCGCTGGGTT
TGAGGCTTCTTAGTAGTGTGTCCGGCAAAAACGTTCAGTTGATTACAATC
TTGTACCCAGAGCCAATTGCACCACATTTTGATTGACGTACTACAACCTT
TCATGAGCGCTATCAGTAGCGAAAAAAAAGAGCTTTTCATATGGTATTTA
AAATCAAAAGTTGAGTTGAACTCATTCCCTAGAGAGATAGCTCGCAATTG
TATCACTAAATTGTATCAATAAATTAAAAAGTAAGATTTAAGGGAAAAGA
TTTATATAAAGTTTTATTTTTATTCAGTGTGAAACTAGGCATAAAGAATG
TTTGGCTGACACTTCCAAAGACGAGGAATCGTGCAACGCAACATTGGACT
ACTGTAAAAATGACTGCAAACTCTAAGGTCCAAACCTACAACTATTTGTA
ATTTTGATTGAAAGAAAATGATATACAACCTATTTTGTCTGTTTTATTTT
GCATTAAATATTCCATTCTCTGTCTGAGATGAACTTCGATTATGTGCCGT
GTGCGTGCTGCATTTCCGAAAGGGGGGACAAAAAACATCTCGGTCAAAGT
TAGACAATTGACATCTTGAAAGAAAGACACAATTTTGAAAAAGTTTTGTT
CAAAAAAAATCAAAAAAAGGGGGGGGGAGCAAAAGGAAAAATGGGAAGGG
GTGGATTTCAAAAAGGTGCAACAAAATTTTTCTGGGGGAGAAAGTCTTCT
GTCACCTTTTTAGTTTTTTTACATATGCATATTTTTTCTTCCTCAAATCA
CATGGCAGGCAGATGTTCTCTTTCTTGATACATTTTAGTGTGCAATACAC
CCCTGTCTCACTGCCCAGGTGGAGCATTTTTCTTCAGTGGGGATAAAAAT
CCCTATTGAAATCCCAATGAGGATAGTTATAAGCGCACCTATTTTATAAG
AATCAAATCAATAACTCTTGATAAACAGCCATATATCTTTCGGTAATTAG
CTCTTACAAAGTAAACAAGGTACAGTGCACAATATGGAGCATGTTTATTG
TTCTTATAAACATCTACTTTATAAGAATCAAATTAATAACTCTTGATAAC
GGAGACATCAGTTATTTTACTCTTTGCGCCAAGCTGTACACCTTTTTTCT
TTTTTGTCAGCTAATCAGAGAGAAGAAAAACATTTGGCTTTGGTGTTTTC
TTCTTGTGTAAAAATATTTTCGATAATGTGCTGCTCACAATGGTTTCAAA
GGAACGAGACAAGCGCTCAGCGAACAGAAATTTCTAGCTGTGCGCTTATT
TGATGGCGATCCAATAAAACGATCTAGTGGAATGCAGCTTTCAAACGTTC
ATTCTCGATTATGAATGCGTTCGCGGGGCATTCATAGCGACAACTACTTG
CTAGTACTGTATATTCTCTTTGGATGAAATCAGGGTAAATCCGACGTGGA
CGAAAATTTTGACAAATTTTCCAGTGGGACTGGGGTCCCAGCGGGTCTGT
GACACAGGGTTGTTGTAATGTAAATGTCAAACTCAAAGACAAAGGCGCAT
AAAAATTCGAGGGGTAAATAACTCGAAAAATTATCGTACACCTCTACAAA
AAGTCAAAAAAAAGTCAAAAAGTCAAAGAAAAAGTCAAAAAGTCAAAAAT
AAAGTCAAAAAGTCAAAGAAAAAGTCAAAAATTCTTAGAAAAAAGTCAAA
AAGTTAAATAAAAGTCAAAAAAAAGTCTTGAAAAAGTCAAAATATTTCTT
GAATGGGCGGATGGGTGGAGCAAAATTTATGGGCGGTTTGGCGTTTTTGG
ACAGATTTGGGCGGAAAATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGT
GGGCGTTTTTGTCGGAAAAAGTCAAAATGAAAGTTTGAAAAAAGTCAAAA
AAAAGTCAAAAAAAAGTCAAAAAGTCAAATAAAAGTCAAAAAAAAGTCAA
AAAGTCAAATGAAAATTCAAAAAGTCAAACAGTATCGTACACCTTTTTTC
AAGTGATTTACCCCTCGTAAAAATTAATAATCTGAATTAATCAACACCCG
GGGGGGGCACTGACCTTGACGACCGACGGGGACGTGCCGCTGGAGTTTCA
AAAGTCGATCCTGTCAGAAATGAAATTTGATGAAAAATAGACCCTGTCAG
AAGAAAAATTCGATGAAAAACCTACCCTGTCAGATTCTACTGTGAAAAAC
CTACCCTGTCAGATTCTACCCTGAAAAACCTACCCTGTCAGATTCTATGT
TAAAAACCTACACGTTTTTCGCGTTTTTCGTAAAGTTCAACGCGATATCA
ACATTTCCAGGCTAAAAAACTACAGAATTGCATAAACATTAAACCTCAAT
ACCTGGAAAACCGACCAAAAGAATCGACGACGAGAGTTATGAAATTACAA
AGTAAACATATCTTTAACATTATTCAAAATCATCACTCTCTACTTCCACA
AAATGTGTTTCAAAGCTAGAGAGGTCATACAATATTATAGTTGTACAAGA
ACAAATAGAACGCTAAAGTTTCAAAAAACGTAATAATGAACGTAGATAAA
TTTCAGATATCCGTTTCCAGGATTACCGTAGGATCACATAAGATTCCGAT
TCCCGCTCTAGCATTACTGGGATCATTTCGCTAGTTTTCCCGGTCATACC
GGCAGAAAAAAGTGAATTAGTCCAAGCTGGCAAATCATAAAACGCAAAAA
AGAAGTAATGTTTTGATTATTTTTATAATCGGCCAACTTGTTTCATTGTT
TTCAACTAGTCGGAACTGACTATCATCTGTTTTCAAGTGGCAAGTGGAAT
GTTATAGCAGGAATCGGAATCTTATGTGATCCTACGGTAAGGTTCTCAAA
ATCAGAACTGACGAGGTCTAGGTTTGAAAGGACTATTTTGCAAGTATAAG
CTTTAAAACGACGCTTTTACAAAGAGGACAAGAGGATGTCAATGAAGAGT
CGAGAGTATTGTTCTGTTCTACAGCTGTTCTAAGCCTACAGCGGAATGTC
TCAACGATATGGGAAGAAACATAACAGTTGAAATAAAAAATCTGAATCAA
AATCTGGAATCTGTTGTTAGTACCACTATTCAGCTGAACATTTATTCTAA
ATAGTTCAATAGAGGTATCTTTGAAATTAGCCTCGATCCTTTTAAGAGGG
CGCAATGGCGGGCGTGTGGTGCGAGACAACAGCAGCAAAGCGCCTGTGTT
GGCCTAGACGAGACTGGCAACTCTACCGACTGTTAACTCTTTTCGGCAAA
AAAAACCGTTTGCGAATTTTCTTCGGCTTTGGGCTTTTTTCTTAGATAGT
GATTCGTCTTAGACTATAACATAGTCTAGTGTTGGCCGTGCGATAAGTAT
TTGCAAAAAGCTGTTTGCCCCTCGGGTGTGCTCACCGCCGCGTCAAAACG
ATTAGCAAAAACGGCAAAAACAGACCCTGTCAGACACACATCATGAAATT
GCGCCCCTGTCAGATCAGGATTTTGCAATTTTAGATACCCTGTCAGTAAT
TCTGCGACACTGAAAAAGGTACCCTGACCAGCGGCACGTCCCCGTACCTA
TTTTTGCCTAAGTGCCCCCCCCCCGGGAATCAACATTTCTTTTCTGGGAA
GGGAAAACACTATAAAATGGTTGAGAAAAGGATTTTTTCATTTTCAGCAC
CCCCACTTTTTTGCAAAGTAAAAAGTTTTGCTTGGCGCCTCCTTAGACTC
TATATTCATTGCCCCCCCCCCAAAAAAAAAAAACTTTCAATTTCATGGCG
TGAGAAAAAAATTTGCTGCATGATAAAAGATCAAATAGCCTCCGTTCGTA
AAATTTTCTCGGGAAATCAGAACGCGGGTAAGTAGGCTAGTTTGTTTTGA
AGACGAACTCTTTTTGACCTCAAAAAGAAAAAGCTTCTCAATGGTTTTGG
ACGGTTTTGGGGTAATATATTTTGCAGATTGATGGTAAATTTGTTTGAAA
AACTATTTTCAGAGTCTACATGTTTAATATTATACATTTGTAATCATCAA
GAAAATGTGAGATGGGGACAGTTGGAGATCTGAAGAAAGAAATCGACCGA
TTGACTTTTGATCTGCAACAGGCCTGTCTTGAGAAAGTACAAGCTGCTGA
GTATGGTTTGGCAGTTTTGGAAGAAAAGCAGCAGATCCAAGACAAGTATG
AAGAGCTTGAAAAAACATATGAGAACAAAAACAAAGAATTAAGCCAAGCT
GTTGAGGTATACCCATAAGTTTAGACATTTTATATTGTAATCAAAACAAA
AAAGGACACAGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039306XLOC_039306Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062733-exon-scaffold_371-1575043694:358217..358254TCONS_00062733-exon-scaffold_371-1575043694:358217..358254Clytia hemisphaericaexon
TCONS_00062733-exon-scaffold_371-1575043694:350741..351003TCONS_00062733-exon-scaffold_371-1575043694:350741..351003Clytia hemisphaericaexon
TCONS_00062733-exon-scaffold_371-1510915933:358217..358254TCONS_00062733-exon-scaffold_371-1510915933:358217..358254Clytia hemisphaericaexon
TCONS_00062733-exon-scaffold_371-1510915933:350741..351003TCONS_00062733-exon-scaffold_371-1510915933:350741..351003Clytia hemisphaericaexon
TCONS_00062733-exon-scaffold_371-1491911889:358217..358254TCONS_00062733-exon-scaffold_371-1491911889:358217..358254Clytia hemisphaericaexon
TCONS_00062733-exon-scaffold_371-1491911889:350741..351003TCONS_00062733-exon-scaffold_371-1491911889:350741..351003Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_371supercontigscaffold_371:350741..358254 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.385149	0.375581	0.436085	0.853283	34.2801	32.8346	34.1667	27.3507	13.956	16.8847	18.73	14.8774	13.3198	11.9707	9.84151	16.6636	29.4912	10.3722	6.55075	11.5676	8.56483	11.4431	7.50727	8.43113	28.5327	32.1077	10.0342	7.32705	10.2596	8.71079
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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