|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062736 ID=TCONS_00062736|Name=TCONS_00062736|organism=Clytia hemisphaerica|type=transcript|length=5556bpRun BLAST on NCBI transcript from alignment at scaffold_371:361305..380746- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062736 ID=TCONS_00062736|Name=TCONS_00062736|organism=Clytia hemisphaerica|type=transcript|length=19442bp|location=Sequence derived from alignment at scaffold_371:361305..380746- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00062736 vs. Swiss-Prot (Human)
Match: KDM5A (Lysine-specific demethylase 5A OS=Homo sapiens GN=KDM5A PE=1 SV=3) HSP 1 Score: 914.064 bits (2361), Expect = 0.000e+0 Identity = 459/970 (47.32%), Postives = 639/970 (65.88%), Query Frame = 2
Query: 2 GFEDVTRLRRWTRVAALMNYT-APATSGILRRHYEKILYPYDIFMSG-AMIGGDTPTEKSTTSMSKQEMKQMKNDPEYKPNGDDDVMETSSIHTRLSRNKQLEDEGIEEDCKIDYTKNPELRKLQFSAPGPKITG------------RRNKKVSDKYNAKDYETNLQKGGKNVNRFNFHSFIDDYKCRVCENGDDEDCMLLCDQCDASYHTFCLIPPLAGIPPGDWRCPKCVAKECNKPLETYGFEQAKKIYTLEDFSEMADKFKEDYFSMPPTEVPVRVVEKEFWKLVSSIDHDISVEYAADLHTADHGSGFPT-EKNSGVFSDTSEYIXXXXXXXXXXXXEKSVLKYITQDISGMKVPWIYVGMCFSSFCWHTEDHWSYSINFHHWGEPKTWYGVPQSEAERLESCVKEIAPELFERNPDLFHHLVTLCSPMTLMKHGVPVFRTNQYPGEFVVTFPRAYHAGFNTGYNCAEAVNFCPAEWLPSGQECVKHYQKMRRVTVFSHDELLFKMASIPDALELDLAKKLYDCMRDVVDAEIDARHRMSRLGIMDKQREAYELINDDERQCDYCKTTIFLSGVACACDKKRLTCLNHWDKPCGCGSSKKYIRFRYTLRELPKILADLKKRADSFDNWEIAVHKVLSKTDATKIEFTALKDYITEAEESQFPECELLDQLRVYVSEAEQCSQVANQLLTKKHKTRKT-STGPTPSSPRLTLNELRDFVNQIDNLPCIIKEAAAIDKLMAQVESFRYDAKLVLNSDDYNEKKVLELLEHAETMDVDLPEINDLRLDLKASKWLESIDEILNQEDPISLDVIRSCVDQGIGLRKKQASEKPLSRLKELLYAADRWEEKAKLCLQAKPRHMVGTLEVIVQEASKVKIILPNVSALKDALFKAKDWTSKVERVHNDQYYPYYDILEALVVKGRPIPVRLEQLPQMESQVAAARAWKDRTSRTFVKKASNKLLMELLQPR 2863
GFE VT+ ++W++V + + Y T +L+ HYE+ILYPY++F SG +++G P + K E + + D + P + + + R R K + G D ++N EL+KLQ GPK+ G R +KV+++ +A + + +KG +VN F+D Y C C G++ED +LLCD CD SYHTFCLIPPL +P GDWRCPKCVA+EC+KP E +GFEQA + YTL+ F EMAD FK DYF+MP VP +VEKEFW+LVSSI+ D+ VEY AD+ + D GSGFP + + + EY S WNLNN P E+SVL +I DISGMKVPW+YVGMCFSSFCWH EDHWSYSIN+ HWGEPKTWYGVP AE+LE ++E+APELFE PDL H LVT+ +P LM+HGVPV+RTNQ GEFVVTFPRAYH+GFN GYN AEAVNFC A+WLP G++CV HY+++RR VFSH+EL+FKMA+ P+ L++ LA + + + + E R + ++G++ + E +EL+ DDERQC C+TT FLS + C+C+ +RL CL H C C KK +R+RY L +LP +L +K RA S+D W V + LS K + L+ + +AE+ ++PE +L +LR V EAE C+ VA LL+KK K R++ +G T + +LT+ EL+ FV Q+ +LPC+I +A + L+ VE F A+ + + + K+ L++ ++ V+LPE+ L+ +L+ ++WL+ + L+ ++LDV++ +D G+GL A EK ++ L+ELL ++RWEEKAK+CLQA+PRH V +LE IV EA + LPNV +LK+AL KA++WT+KVE + + Y Y + LE+L KGRPIPVRLE LPQ+ESQVAAARAW++RT RTF+KK S+ L+++L PR
Sbjct: 129 GFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYPYELFQSGVSLMGVQMP---NLDLKEKVEPEVLSTDTQTSPEPGTRM---NILPKRTRRVKTQSESG-------DVSRNTELKKLQIFGAGPKVVGLAMGTKDKEDEVTRRRKVTNRSDAFNMQMRQRKGTLSVN------FVDLYVCMFCGRGNNEDKLLLCDGCDDSYHTFCLIPPLPDVPKGDWRCPKCVAEECSKPREAFGFEQAVREYTLQSFGEMADNFKSDYFNMPVHMVPTELVEKEFWRLVSSIEEDVIVEYGADISSKDFGSGFPVKDGRRKILPEEEEYALSGWNLNNMPVLEQSVLAHINVDISGMKVPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPSHAAEQLEEVMRELAPELFESQPDLLHQLVTIMNPNVLMEHGVPVYRTNQCAGEFVVTFPRAYHSGFNQGYNFAEAVNFCTADWLPIGRQCVNHYRRLRRHCVFSHEELIFKMAADPECLDVGLAAMVCKELTLMTEEETRLRESVVQMGVLMSEEEVFELVPDDERQCSACRTTCFLSALTCSCNPERLVCLYHPTDLCPCPMQKKCLRYRYPLEDLPSLLYGVKVRAQSYDTWVSRVTEALSANFNHKKDLIELRVMLEDAEDRKYPENDLFRKLRDAVKEAETCASVAQLLLSKKQKHRQSPDSGRTRT--KLTVEELKAFVQQLFSLPCVISQARQVKNLLDDVEEFHERAQEAMMDETPDSSKLQMLIDMGSSLYVELPELPRLKQELQQARWLDEVRLTLSDPQQVTLDVMKKLIDSGVGLAPHHAVEKAMAELQELLTVSERWEEKAKVCLQARPRHSVASLESIVNEAKNIPAFLPNVLSLKEALQKAREWTAKVEAIQSGSNYAYLEQLESLSAKGRPIPVRLEALPQVESQVAAARAWRERTGRTFLKKNSSHTLLQVLSPR 1077 HSP 2 Score: 149.058 bits (375), Expect = 1.056e-35 Identity = 87/195 (44.62%), Postives = 119/195 (61.03%), Query Frame = 2
Query: 3170 DPLTVAQNLKDDEVIELAAMKELREKN--KQKLVEENIEGPYCLCRKGIDGFMIRCNLCFNWYHTSCICPPKTVYGKPIGKGYNSWTATREVHYLCTQCCRSRRPRLDNILQLLMSLQKLPVRVPEGEALQFLTERAMNWQDRAKQALSNPEISRIITE------------AKAQVEKILAEKQLLSSANTNHNG 3712
D V K+ E E+ AM LR N K +V+ E +C+CRK GFM++C LC +W+H SC+ PK+ K +SW A +EV +LC C RSRRPRL+ IL LL+SLQKLPVR+PEGEALQ LTERAM+WQDRA+QAL+ E+S + + A+ + EKI++ + ++AN + G
Sbjct: 1122 DTAMVVAVFKEREQKEIEAMHSLRAANLAKMTMVDRIEEVKFCICRKTASGFMLQCELCKDWFHNSCVPLPKSSSQK----KGSSWQA-KEVKFLCPLCMRSRRPRLETILSLLVSLQKLPVRLPEGEALQCLTERAMSWQDRARQALATDELSSALAKLSVLSQRMVEQAAREKTEKIISAELQKAAANPDLQG 1311 The following BLAST results are available for this feature:
BLAST of TCONS_00062736 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.