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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062760 ID=TCONS_00062760|Name=TCONS_00062760|organism=Clytia hemisphaerica|type=transcript|length=1038bp
AGCACTGAGGGCACATTTTCTTGTTGAATCTGCTCTTGTTTGCAAATTGG
TGTCACCACTTGTTGGTTCTGATGATGAGGCTGTAGAAATCGAAGATCTG
ACAACCGATCTGAACGTGATTGCCAATGCTGTTGATCCCACCATTGATTT
GGACATGAGCAGATATCCAACACTGTCGAAACTTCTGGAACTTCTAGAAG
ATTACAAAGATGATCTGAAAACATGCTCACGTACCGCGAAATTATGGTTG
CAATATCTAGATTACAAGGAAGTTGTCAAGGATTTCATTAGATCAGAAAA
GACAGGAGATTGGAAGCTTTACCTTTTCTCGGATGATCGACCTGCTTGCA
GCAACCACTCACATCCACTACGCTAAGAACGCCAGGCTACACCTCCAAAA
TATACTCGAGCTCAAGACAACTCACCCTTGGGTTTACAAGCAGTTTTCAA
ATGGTTACCACACTGTGAGACAAAGCGATAAATTTTGGGCTGGTTTATGG
TCGGATTTGATCATCAAGCAGGTAATGATGCGATTCATCAAAAGCAACGG
AGGCCTCACTCATAGTAGGGGAATCTCCGCATCAACACGTCAACTTTGGA
TTGGAAGCATTCACTGATCTGCCGACATCCACAACGCTATGTCAAAACGA
GCGAGCAACATGTCAATCTTTCGTTGAGCAGAATGAAGCGTGACGATAAA
GATTTCGCTACCGTAAAAGATTGGTTTGACAACCACGAACCGTTCGAAAA
AACAGAGCCTGAATTGAAGAGTCTCTCGAGTGAACTGATCGCTGAGCCAG
AGATTAACTGTGATGTGGCCGAAGACGTTGGAAGAGGGATTCAAAAGAAG
CAAGACGACATTGTGTTCGAGGAGGCCAGGATTCGACAGAAGGAGAAAGC
AAAAACCTTCGAAGACATGCTTTCAGCGAGCAATCAAGATTGGAGACAGC
AAAAAGTCCAACAATATTGTTTAGTTGACTAACTGCTCTTGGCAACTTCA
CTGAGGATGTTGGTGAAAATTTCTGTCATGACCTAACC Run BLAST on NCBI protein sequence of TCONS_00062760-protein >TCONS_00062760-protein ID=TCONS_00062760-protein|Name=TCONS_00062760-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
ALRAHFLVESALVCKLVSPLVGSDDEAVEIEDLTTDLNVIANAVDPTIDL
DMSRYPTLSKLLELLEDYKDDLKTCSRTAKLWLQYLDYKEVVKDFIRSEK
TGDWKLYLFSDDRPACSNHSHPLR Run BLAST on NCBI transcript from alignment at scaffold_371:4454..5491 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062760 ID=TCONS_00062760|Name=TCONS_00062760|organism=Clytia hemisphaerica|type=transcript|length=1038bp|location=Sequence derived from alignment at scaffold_371:4454..5491 (Clytia hemisphaerica)
GGTTAGGTCATGACAGAAATTTTCACCAACATCCTCAGTGAAGTTGCCAA
GAGCAGTTAGTCAACTAAACAATATTGTTGGACTTTTTGCTGTCTCCAAT
CTTGATTGCTCGCTGAAAGCATGTCTTCGAAGGTTTTTGCTTTCTCCTTC
TGTCGAATCCTGGCCTCCTCGAACACAATGTCGTCTTGCTTCTTTTGAAT
CCCTCTTCCAACGTCTTCGGCCACATCACAGTTAATCTCTGGCTCAGCGA
TCAGTTCACTCGAGAGACTCTTCAATTCAGGCTCTGTTTTTTCGAACGGT
TCGTGGTTGTCAAACCAATCTTTTACGGTAGCGAAATCTTTATCGTCACG
CTTCATTCTGCTCAACGAAAGATTGACATGTTGCTCGCTCGTTTTGACAT
AGCGTTGTGGATGTCGGCAGATCAGTGAATGCTTCCAATCCAAAGTTGAC
GTGTTGATGCGGAGATTCCCCTACTATGAGTGAGGCCTCCGTTGCTTTTG
ATGAATCGCATCATTACCTGCTTGATGATCAAATCCGACCATAAACCAGC
CCAAAATTTATCGCTTTGTCTCACAGTGTGGTAACCATTTGAAAACTGCT
TGTAAACCCAAGGGTGAGTTGTCTTGAGCTCGAGTATATTTTGGAGGTGT
AGCCTGGCGTTCTTAGCGTAGTGGATGTGAGTGGTTGCTGCAAGCAGGTC
GATCATCCGAGAAAAGGTAAAGCTTCCAATCTCCTGTCTTTTCTGATCTA
ATGAAATCCTTGACAACTTCCTTGTAATCTAGATATTGCAACCATAATTT
CGCGGTACGTGAGCATGTTTTCAGATCATCTTTGTAATCTTCTAGAAGTT
CCAGAAGTTTCGACAGTGTTGGATATCTGCTCATGTCCAAATCAATGGTG
GGATCAACAGCATTGGCAATCACGTTCAGATCGGTTGTCAGATCTTCGAT
TTCTACAGCCTCATCATCAGAACCAACAAGTGGTGACACCAATTTGCAAA
CAAGAGCAGATTCAACAAGAAAATGTGCCCTCAGTGCT Coding sequence (CDS) from alignment at scaffold_371:4454..5491 >TCONS_00062760 ID=TCONS_00062760|Name=TCONS_00062760|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at scaffold_371:4454..5491 (Clytia hemisphaerica)
TTAGCGTAGTGGATGTGAGTGGTTGCTGCAAGCAGGTCGATCATCCGAGA
AAAGGTAAAGCTTCCAATCTCCTGTCTTTTCTGATCTAATGAAATCCTTG
ACAACTTCCTTGTAATCTAGATATTGCAACCATAATTTCGCGGTACGTGA
GCATGTTTTCAGATCATCTTTGTAATCTTCTAGAAGTTCCAGAAGTTTCG
ACAGTGTTGGATATCTGCTCATGTCCAAATCAATGGTGGGATCAACAGCA
TTGGCAATCACGTTCAGATCGGTTGTCAGATCTTCGATTTCTACAGCCTC
ATCATCAGAACCAACAAGTGGTGACACCAATTTGCAAACAAGAGCAGATT
CAACAAGAAAATGTGCCCTCAGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062760-exon-scaffold_371-1491911889:4454..5491 | TCONS_00062760-exon-scaffold_371-1491911889:4454..5491 | Clytia hemisphaerica | exon |
| TCONS_00062760-exon-scaffold_371-1510915933:4454..5491 | TCONS_00062760-exon-scaffold_371-1510915933:4454..5491 | Clytia hemisphaerica | exon |
| TCONS_00062760-exon-scaffold_371-1575043694:4454..5491 | TCONS_00062760-exon-scaffold_371-1575043694:4454..5491 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_371 | supercontig | scaffold_371:4454..5491 . |
Blast
The following BLAST results are available for this feature:
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