TCONS_00062773 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062773
Unique NameTCONS_00062773
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1175

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062773 ID=TCONS_00062773|Name=TCONS_00062773|organism=Clytia hemisphaerica|type=transcript|length=1175bp
ATTATAGTTTAAAgatttcaatttaaaatttaacTTAGAAGAGAAAATGG
CTCAAATAAGCACTGACAAAGATAATGGACAATATCTTAATCGAATTGGG
AAATTGGTAACAGAAGTAGCTAAAGAGTCTGTTCAAAATCATGGTTATTT
TTCTATTGCATTTTCTGGAGGTAGTGCTGCAACTAAGATTTGTGcagctt
ttcaaaaagatgaGTATTCTCAAGCaactgatttttcaaaatggaaaatc
tttttttctgatgaaCGCTATGTTGAGCTAGAGCATCCAGATAGCAATTA
CAAAGCAATCAAGGATGGATTGATTGACAAACAAAGCGCTATCAAAGCTG
AGAATGTTTTTACGTTGACCAAAACTGATGATCTAACAAAAGACGCTGCA
AATTATGAAACACAAATGAAATCAGTGTTTACCGGTCAAGAATTCCctaa
atttgatttgattgttttggGGATGGGTCCTGATGGTCACATTTGTTCAC
TTTTTCCCAACCATACACTTCTTGAGGAACAAACAAAATGGATTGGTTAT
CTCCaagattcaccaaaaccaccaccAGAGAGAATCACTTTCACAATGAA
TGTTGTCAACAATGCTGCAAATGTTGTTTTCATTGCAACTGGTGaagcaa
aagctgaaaatgtACGTAGGGCTGTTAAAGAAGAGCCAACTAAAGAGATC
CCAGCATCTTTGGTTAAGCCTAAAAAAGGAACTTTATATTGGTTCCTGGA
TGCAGGTTCTTCCagtaaattataaaaaagttgtGAAAGGTAGAAATGCA
CAAAGGGATGCacatatttttgtatttttgtagtaTTGACTTTTACAGCA
TTTTAATATTATTAGGGTATTTTTTAATAACATAATTTGAATAGAAAAAT
TGATAGCACAAAAATAGATTTCTAAAATGATAAATAATCTTGATACAGTG
TATCCGGTCAAATGAATTGCATTAATGACTTTGCTCTGTAATTGTTTTTC
TCAGCTAATTAGTTATTACTTAATAGAGTAATTATTTGAAAAGGTttcat
aaaatgtttttcattcaaatgaaCTATGTTTAATGATTTTTACATGACTG
ATTTGTCTAGTTCGGTTCTTTATTAACGCttcttgtttatttatttattg
tattaaaattgattctagataggag
Run BLAST on NCBI

protein sequence of TCONS_00062773-protein

>TCONS_00062773-protein ID=TCONS_00062773-protein|Name=TCONS_00062773-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MAQISTDKDNGQYLNRIGKLVTEVAKESVQNHGYFSIAFSGGSAATKICA
AFQKDEYSQATDFSKWKIFFSDERYVELEHPDSNYKAIKDGLIDKQSAIK
AENVFTLTKTDDLTKDAANYETQMKSVFTGQEFPKFDLIVLGMGPDGHIC
SLFPNHTLLEEQTKWIGYLQDSPKPPPERITFTMNVVNNAANVVFIATGE
AKAENVRRAVKEEPTKEIPASLVKPKKGTLYWFLDAGSSSKL
Run BLAST on NCBI

transcript from alignment at scaffold_371:324624..325798

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062773 ID=TCONS_00062773|Name=TCONS_00062773|organism=Clytia hemisphaerica|type=transcript|length=1175bp|location=Sequence derived from alignment at scaffold_371:324624..325798 (Clytia hemisphaerica)
ctcctatctagaatcaattttaatacaataaataaataaacaagaaGCGT
TAATAAAGAACCGAACTAGACAAATCAGTCATGTAAAAATCATTAAACAT
AGttcatttgaatgaaaaacattttatgaaACCTTTTCAAATAATTACTC
TATTAAGTAATAACTAATTAGCTGAGAAAAACAATTACAGAGCAAAGTCA
TTAATGCAATTCATTTGACCGGATACACTGTATCAAGATTATTTATCATT
TTAGAAATCTATTTTTGTGCTATCAATTTTTCTATTCAAATTATGTTATT
AAAAAATACCCTAATAATATTAAAATGCTGTAAAAGTCAAtactacaaaa
atacaaaaatatgtGCATCCCTTTGTGCATTTCTACCTTTCacaactttt
ttataatttactGGAAGAACCTGCATCCAGGAACCAATATAAAGTTCCTT
TTTTAGGCTTAACCAAAGATGCTGGGATCTCTTTAGTTGGCTCTTCTTTA
ACAGCCCTACGTacattttcagcttttgcttCACCAGTTGCAATGAAAAC
AACATTTGCAGCATTGTTGACAACATTCATTGTGAAAGTGATTCTCTCTg
gtggtggttttggtgaatcttGGAGATAACCAATCCATTTTGTTTGTTCC
TCAAGAAGTGTATGGTTGGGAAAAAGTGAACAAATGTGACCATCAGGACC
CATCCccaaaacaatcaaatcaaatttagGGAATTCTTGACCGGTAAACA
CTGATTTCATTTGTGTTTCATAATTTGCAGCGTCTTTTGTTAGATCATCA
GTTTTGGTCAACGTAAAAACATTCTCAGCTTTGATAGCGCTTTGTTTGTC
AATCAATCCATCCTTGATTGCTTTGTAATTGCTATCTGGATGCTCTAGCT
CAACATAGCGttcatcagaaaaaaagattttccattttgaaaaatcagtt
GCTTGAGAATACtcatctttttgaaaagctgCACAAATCTTAGTTGCAGC
ACTACCTCCAGAAAATGCAATAGAAAAATAACCATGATTTTGAACAGACT
CTTTAGCTACTTCTGTTACCAATTTCCCAATTCGATTAAGATATTGTCCA
TTATCTTTGTCAGTGCTTATTTGAGCCATTTTCTCTTCTAAgttaaattt
taaattgaaatcTTTAAACTATAAT

Coding sequence (CDS) from alignment at scaffold_371:324624..325798

>TCONS_00062773 ID=TCONS_00062773|Name=TCONS_00062773|organism=Clytia hemisphaerica|type=CDS|length=729bp|location=Sequence derived from alignment at scaffold_371:324624..325798 (Clytia hemisphaerica)
ttataatttactGGAAGAACCTGCATCCAGGAACCAATATAAAGTTCCTT
TTTTAGGCTTAACCAAAGATGCTGGGATCTCTTTAGTTGGCTCTTCTTTA
ACAGCCCTACGTacattttcagcttttgcttCACCAGTTGCAATGAAAAC
AACATTTGCAGCATTGTTGACAACATTCATTGTGAAAGTGATTCTCTCTg
gtggtggttttggtgaatcttGGAGATAACCAATCCATTTTGTTTGTTCC
TCAAGAAGTGTATGGTTGGGAAAAAGTGAACAAATGTGACCATCAGGACC
CATCCccaaaacaatcaaatcaaatttagGGAATTCTTGACCGGTAAACA
CTGATTTCATTTGTGTTTCATAATTTGCAGCGTCTTTTGTTAGATCATCA
GTTTTGGTCAACGTAAAAACATTCTCAGCTTTGATAGCGCTTTGTTTGTC
AATCAATCCATCCTTGATTGCTTTGTAATTGCTATCTGGATGCTCTAGCT
CAACATAGCGttcatcagaaaaaaagattttccattttgaaaaatcagtt
GCTTGAGAATACtcatctttttgaaaagctgCACAAATCTTAGTTGCAGC
ACTACCTCCAGAAAATGCAATAGAAAAATAACCATGATTTTGAACAGACT
CTTTAGCTACTTCTGTTACCAATTTCCCAATTCGATTAAGATATTGTCCA
TTATCTTTGTCAGTGCTTATTTGAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039323XLOC_039323Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062773-proteinTCONS_00062773-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062773-exon-scaffold_371-1491911889:324624..325798TCONS_00062773-exon-scaffold_371-1491911889:324624..325798Clytia hemisphaericaexon
TCONS_00062773-exon-scaffold_371-1510915933:324624..325798TCONS_00062773-exon-scaffold_371-1510915933:324624..325798Clytia hemisphaericaexon
TCONS_00062773-exon-scaffold_371-1575043694:324624..325798TCONS_00062773-exon-scaffold_371-1575043694:324624..325798Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_371supercontigscaffold_371:324624..325798 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
33.8821	28.6651	63.9718	69.5548	23.9444	18.2315	19.0022	19.206	12.4112	13.979	10.4658	7.3638	8.02121	5.15702	8.14161	8.34617	20.7689	20.1067	5.09767	8.80592	13.4875	12.4526	26.6462	26.7683	13.0295	14.6663	19.0327	10.9866	19.4019	18.9494
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006148Glc/Gal-6P_isomerase
IPR0059006-phosphogluconolactonase_DevB
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO:0006098pentose-phosphate shunt
Vocabulary: Molecular Function
TermDefinition
GO:00170576-phosphogluconolactonase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0006098 pentose-phosphate shunt
molecular_function GO:0017057 6-phosphogluconolactonase activity
Blast
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BLAST of TCONS_00062773 vs. Swiss-Prot (Human)
Match: 6PGL (6-phosphogluconolactonase OS=Homo sapiens GN=PGLS PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 2.766e-43
Identity = 80/228 (35.09%), Postives = 128/228 (56.14%), Query Frame = 2 
Query:   95 IGKLVTEVAKESVQN-HGYFSIAFSGGSAATKICAAFQKDEYSQAT-DFSKWKIFFSDERYVELEHPDSNYKAIKDGLIDKQSAIKAENVFXXXXXXXXXXXAANYETQMKSVFTGQEFPKFDLIVLGMGPDGHICSLFPNHTLLEEQTKWIGYLQDSPKPPPERITFTMXXXXXXXXXXFIATGEAKAENVRRAVKEEPTKEIPASLVKPKKGTLYWFLDAGSSSKL 772
            + +LV + A   +      F++  SGGS  + +                ++W + F DER V  +H +S Y   +  L+ +   I    V T+     + + A +Y  +++  F G   P FDL++LG+GPDGH CSLFP+H LL+E+ K +  + DSPKPPP+R+T T+ V+N A  V+F+ATGE KA  ++R ++++    +PA+LV+P  G L WFLD  ++  L
Sbjct:   22 LAQLVAQRAACCLAGARARFALGLSGGSLVSMLARELPAAVAPAGPASLARWTLGFCDERLVPFDHAESTYGLYRTHLLSRLP-IPESQVITINPELPVEEAAEDYAKKLRQAFQGDSIPVFDLLILGVGPDGHTCSLFPDHPLLQEREKIVAPISDSPKPPPQRVTLTLPVLNAARTVIFVATGEGKAAVLKRILEDQEENPLPAALVQPHTGKLCWFLDEAAARLL 248
The following BLAST results are available for this feature:
BLAST of TCONS_00062773 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
6PGL2.766e-4335.096-phosphogluconolactonase OS=Homo sapiens GN=PGLS ... [more]
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