TCONS_00062775 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062775
Unique NameTCONS_00062775
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062775 ID=TCONS_00062775|Name=TCONS_00062775|organism=Clytia hemisphaerica|type=transcript|length=532bp
TTTTGCTTCAATGTTGTAAAGTAATCTGTGATGATTCTTTTGACCGTCTA
CTTTTCAGGACAAATTGGAGTCCTGGCAAAATGGTTCTTCCCACCACATT
TGAAGCATTCTTTGCCATTTGCTGGGTATCTCTCTGACTGATGGCTGGAG
TTGCGTCGGTTGCAGGATCCTTTGTGTCTGTTGCTATACTTTCCTACCTT
TTTGAGCTTCATTACTTTCAGGGTTTCAATCATCTCGTCTATCTCCTCTT
GTGTCATATTATCTTGATTCGTTTCGTTTCGAACACGTTTGACATGTGTT
GTCTTGTCCAGGCTGTGGGCGTCGTCTTGGCCTGCTTCTCGTGCTTGGCC
CCATCTGGAAAGTCTCTCTAGGTTTGGATCCTCCGCAAGCGTCTTCCCTC
TCAGGCTGACATCATTCATGCCGAATATGGCAGCATCCTTTATAGCTTCC
TCTGTGGTGTAAGGTTTCTTGTCAAAGTTCAGGGACTTGGCTTTCTTTTC
GAGATCTAGAAGGAAGTCACCCCACGTTCGTN
Run BLAST on NCBI

protein sequence of TCONS_00062775-protein

>TCONS_00062775-protein ID=TCONS_00062775-protein|Name=TCONS_00062775-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
RTWGDFLLDLEKKAKSLNFDKKPYTTEEAIKDAAIFGMNDVSLRGKTLAE
DPNLERLSRWGQAREAGQDDAHSLDKTTHVKRVRNETNQDNMTQEEIDEM
IETLKVMKLKKVGKYSNRHKGSCNRRNSSHQSERYPANGKECFKCGGKNH
FARTPICPEK
Run BLAST on NCBI

transcript from alignment at scaffold_371:332749..333280

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062775 ID=TCONS_00062775|Name=TCONS_00062775|organism=Clytia hemisphaerica|type=transcript|length=532bp|location=Sequence derived from alignment at scaffold_371:332749..333280 (Clytia hemisphaerica)
NACGAACGTGGGGTGACTTCCTTCTAGATCTCGAAAAGAAAGCCAAGTCC
CTGAACTTTGACAAGAAACCTTACACCACAGAGGAAGCTATAAAGGATGC
TGCCATATTCGGCATGAATGATGTCAGCCTGAGAGGGAAGACGCTTGCGG
AGGATCCAAACCTAGAGAGACTTTCCAGATGGGGCCAAGCACGAGAAGCA
GGCCAAGACGACGCCCACAGCCTGGACAAGACAACACATGTCAAACGTGT
TCGAAACGAAACGAATCAAGATAATATGACACAAGAGGAGATAGACGAGA
TGATTGAAACCCTGAAAGTAATGAAGCTCAAAAAGGTAGGAAAGTATAGC
AACAGACACAAAGGATCCTGCAACCGACGCAACTCCAGCCATCAGTCAGA
GAGATACCCAGCAAATGGCAAAGAATGCTTCAAATGTGGTGGGAAGAACC
ATTTTGCCAGGACTCCAATTTGTCCTGAAAAGTAGACGGTCAAAAGAATC
ATCACAGATTACTTTACAACATTGAAGCAAAA

Coding sequence (CDS) from alignment at scaffold_371:332749..333280

>TCONS_00062775 ID=TCONS_00062775|Name=TCONS_00062775|organism=Clytia hemisphaerica|type=CDS|length=483bp|location=Sequence derived from alignment at scaffold_371:332749..333280 (Clytia hemisphaerica)
CGAACGTGGGGTGACTTCCTTCTAGATCTCGAAAAGAAAGCCAAGTCCCT
GAACTTTGACAAGAAACCTTACACCACAGAGGAAGCTATAAAGGATGCTG
CCATATTCGGCATGAATGATGTCAGCCTGAGAGGGAAGACGCTTGCGGAG
GATCCAAACCTAGAGAGACTTTCCAGATGGGGCCAAGCACGAGAAGCAGG
CCAAGACGACGCCCACAGCCTGGACAAGACAACACATGTCAAACGTGTTC
GAAACGAAACGAATCAAGATAATATGACACAAGAGGAGATAGACGAGATG
ATTGAAACCCTGAAAGTAATGAAGCTCAAAAAGGTAGGAAAGTATAGCAA
CAGACACAAAGGATCCTGCAACCGACGCAACTCCAGCCATCAGTCAGAGA
GATACCCAGCAAATGGCAAAGAATGCTTCAAATGTGGTGGGAAGAACCAT
TTTGCCAGGACTCCAATTTGTCCTGAAAAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039325XLOC_039325Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062775-proteinTCONS_00062775-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062775-exon-scaffold_371-1491911889:332749..333280TCONS_00062775-exon-scaffold_371-1491911889:332749..333280Clytia hemisphaericaexon
TCONS_00062775-exon-scaffold_371-1510915933:332749..333280TCONS_00062775-exon-scaffold_371-1510915933:332749..333280Clytia hemisphaericaexon
TCONS_00062775-exon-scaffold_371-1575043694:332749..333280TCONS_00062775-exon-scaffold_371-1575043694:332749..333280Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_371supercontigscaffold_371:332749..333280 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.922496	0.124662	0.39698	0.608672	0.328611	0.702293	0.892057	0.609546	0.926746	0.526596	1.82299	1.63259	1.28279	0.72297	0.217077	0.373559	0.0935922	0.724355	0.366571	0.571655	1.49167	0.660705	0.251877	0.343489	0.619667	0.261685	0.641256	1.52942	0.594737	0.166298
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062775 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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