|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062776 ID=TCONS_00062776|Name=TCONS_00062776|organism=Clytia hemisphaerica|type=transcript|length=1742bp
CAAGAATCGGCTGTATGACCTTGTCCATCAATGGGAACCACTGCATGTAT
CGTTTCATCATGGTTTCTTCTGGGTGTCCCTCGTGTGCTATGTCAATGAG
ATTCAATCGGAGGTTGCATTGTCCTGGTTGCACGGGTGTGTCTGGAACAT
AGATTTGACCCCCTCTCATGATGTTATTTTCGACCGATAGTTCTTTGTAG
ATTCTGCTGTTGACTTCTGATCCAGATGGCGGCTCTGGTCTGCCTTTTGA
GATGTCTTCCATGAGTTGTTGGTAGTGTGGATCACTTTGAGTAGCATGTC
TGATGGTGTCGATGTCAATCGCCGGTGTTGTGTTGTTGAGGTTGATTTTC
CGTACTAGAATGGTTGTTCCAATATTGAAGCCTAGATCGTCTTGATCGGG
TTCGGGTGTCTGCTACCATAGTCACATGGCATTTCTTTCCCCTTCAGGTA
GCGGAGATTAAATTGGAGATCTTGAACCCGGTCTCTGTGGTTGCTGATTT
TGCGGGATGCCAGTTGCTGTCGATTGTTGTAGATTGAAATGAGAGGTTCA
TGGTCTGTCCATGCTGTGAATTGGCTGCCGACAACGTAGTAGCGAAACTG
CTCCATTGTGAAACAGAGACCAAGACTTTCTCTTTCAATTGGACTGTACC
GTTGTTCAATATCGGTTAGAGCTCTGTTGTTTTGGTCTATCGGAACCCAC
ATACCTTCTCCCCTCTCCTGGTAGATGCATGCTTGGATTCCTACCTCTGA
TGAGTCCGACACCATGTGAGTCTTTTCATTGGGATCGTACGCTTGTAGAG
TCGCTGGATCGTCCAGGATTTGCATCAGTGTCTGGTATGCAGTTTCCTCT
TCTTCCTGCCAGCGGAATTTCTCCCCCTTCTTCAACAATTTGCGAAGCAG
TGCGGTAGTGTCTTCATATCTTGTGTGTAGTTTGTTGTTGAATGTGAACT
TCGCATTGTACTGGCAAGCCATCAACAAAGAGGGAACATCCTCTGTGTTT
TCAGGTCTGCCACCGTCTTTGATGTTTTGAATCTTCTTTGGGTCCGCTGT
CACGCCATTGGAATGGAACGTCCGACCAAATCATTTGATTCTTGTCTGTC
CCAACGTTGATTTGGACGGTTTGAGGATTGTGCCATTCTCTTTACAACGA
TCCAGGAATGCTGCAAGGTTTCTGTAATGTTCCTTATAGTCTCTTCCGTA
GACTAGGATGTTGTCGTGCAATGTAGTGACGCCTTGGAGGCCAGCAAATG
CTTTCCATATCTTGTTGTGGAAGACGCCGCTTGAAGCTGTGGGTCCAAAA
TACAGCCTCTCCATTCTGTGGAGGCCCTCATGTGTTTGAAAGATGCTCTT
GTGTTNTCTCTTGATTGCACTTGTGTCTTGTGTTCGGGGGCTCTTTCCTT
CCTTGTTGAAGGTGATGAATCCCAGGTGTTCTGCGTCGTTGTCTCCGAGT
AGCGGTTCTGGTTGAAAACTGTCCACAACGTTTACTTTGCTATTGATCTT
GCTTCCTTTGGCGTTCTCGATCACAGTGTGAACCATTCCGGTGATGTTGA
GATTGTTTGAAGATCCCCATGCCCTGAGTATGATGTCCGGCTCATCCAGG
GGTCCCATGGCGCTGCTGTAGTGTTCAGGTGTGATGATGGTGTGCTGGCT
ACCTGTGTCTGCGAAGAGGGTGTGTTTTATGCCGCCTATCTTGACGTCGA
CCCATTTGTCTGCTGGCTTAGTCACCTTCTTTATGGCAGTGA Run BLAST on NCBI protein sequence of TCONS_00062776-protein >TCONS_00062776-protein ID=TCONS_00062776-protein|Name=TCONS_00062776-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
TAIKKVTKPADKWVDVKIGGIKHTLFADTGSQHTIITPEHYSSAMGPLDE
PDIILRAWGSSNNLNITGMVHTVIENAKGSKINSKVNVVDSFQPEPLLGD
NDAEHLGFITFNKEGKSPRTQDTSAIKRXHKSIFQTHEGLHRMERLYFGP
TASSGVFHNKIWKAFAGLQGVTTLHDNILVYGRDYKEHYRNLAAFLDRCK
ENGTILKPSKSTLGQTRIK Run BLAST on NCBI transcript from alignment at scaffold_371:333386..335127 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062776 ID=TCONS_00062776|Name=TCONS_00062776|organism=Clytia hemisphaerica|type=transcript|length=1742bp|location=Sequence derived from alignment at scaffold_371:333386..335127 (Clytia hemisphaerica)
TCACTGCCATAAAGAAGGTGACTAAGCCAGCAGACAAATGGGTCGACGTC
AAGATAGGCGGCATAAAACACACCCTCTTCGCAGACACAGGTAGCCAGCA
CACCATCATCACACCTGAACACTACAGCAGCGCCATGGGACCCCTGGATG
AGCCGGACATCATACTCAGGGCATGGGGATCTTCAAACAATCTCAACATC
ACCGGAATGGTTCACACTGTGATCGAGAACGCCAAAGGAAGCAAGATCAA
TAGCAAAGTAAACGTTGTGGACAGTTTTCAACCAGAACCGCTACTCGGAG
ACAACGACGCAGAACACCTGGGATTCATCACCTTCAACAAGGAAGGAAAG
AGCCCCCGAACACAAGACACAAGTGCAATCAAGAGANAACACAAGAGCAT
CTTTCAAACACATGAGGGCCTCCACAGAATGGAGAGGCTGTATTTTGGAC
CCACAGCTTCAAGCGGCGTCTTCCACAACAAGATATGGAAAGCATTTGCT
GGCCTCCAAGGCGTCACTACATTGCACGACAACATCCTAGTCTACGGAAG
AGACTATAAGGAACATTACAGAAACCTTGCAGCATTCCTGGATCGTTGTA
AAGAGAATGGCACAATCCTCAAACCGTCCAAATCAACGTTGGGACAGACA
AGAATCAAATGATTTGGTCGGACGTTCCATTCCAATGGCGTGACAGCGGA
CCCAAAGAAGATTCAAAACATCAAAGACGGTGGCAGACCTGAAAACACAG
AGGATGTTCCCTCTTTGTTGATGGCTTGCCAGTACAATGCGAAGTTCACA
TTCAACAACAAACTACACACAAGATATGAAGACACTACCGCACTGCTTCG
CAAATTGTTGAAGAAGGGGGAGAAATTCCGCTGGCAGGAAGAAGAGGAAA
CTGCATACCAGACACTGATGCAAATCCTGGACGATCCAGCGACTCTACAA
GCGTACGATCCCAATGAAAAGACTCACATGGTGTCGGACTCATCAGAGGT
AGGAATCCAAGCATGCATCTACCAGGAGAGGGGAGAAGGTATGTGGGTTC
CGATAGACCAAAACAACAGAGCTCTAACCGATATTGAACAACGGTACAGT
CCAATTGAAAGAGAAAGTCTTGGTCTCTGTTTCACAATGGAGCAGTTTCG
CTACTACGTTGTCGGCAGCCAATTCACAGCATGGACAGACCATGAACCTC
TCATTTCAATCTACAACAATCGACAGCAACTGGCATCCCGCAAAATCAGC
AACCACAGAGACCGGGTTCAAGATCTCCAATTTAATCTCCGCTACCTGAA
GGGGAAAGAAATGCCATGTGACTATGGTAGCAGACACCCGAACCCGATCA
AGACGATCTAGGCTTCAATATTGGAACAACCATTCTAGTACGGAAAATCA
ACCTCAACAACACAACACCGGCGATTGACATCGACACCATCAGACATGCT
ACTCAAAGTGATCCACACTACCAACAACTCATGGAAGACATCTCAAAAGG
CAGACCAGAGCCGCCATCTGGATCAGAAGTCAACAGCAGAATCTACAAAG
AACTATCGGTCGAAAATAACATCATGAGAGGGGGTCAAATCTATGTTCCA
GACACACCCGTGCAACCAGGACAATGCAACCTCCGATTGAATCTCATTGA
CATAGCACACGAGGGACACCCAGAAGAAACCATGATGAAACGATACATGC
AGTGGTTCCCATTGATGGACAAGGTCATACAGCCGATTCTTG Coding sequence (CDS) from alignment at scaffold_371:333386..335127 >TCONS_00062776 ID=TCONS_00062776|Name=TCONS_00062776|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at scaffold_371:333386..335127 (Clytia hemisphaerica)
ACTGCCATAAAGAAGGTGACTAAGCCAGCAGACAAATGGGTCGACGTCAA
GATAGGCGGCATAAAACACACCCTCTTCGCAGACACAGGTAGCCAGCACA
CCATCATCACACCTGAACACTACAGCAGCGCCATGGGACCCCTGGATGAG
CCGGACATCATACTCAGGGCATGGGGATCTTCAAACAATCTCAACATCAC
CGGAATGGTTCACACTGTGATCGAGAACGCCAAAGGAAGCAAGATCAATA
GCAAAGTAAACGTTGTGGACAGTTTTCAACCAGAACCGCTACTCGGAGAC
AACGACGCAGAACACCTGGGATTCATCACCTTCAACAAGGAAGGAAAGAG
CCCCCGAACACAAGACACAAGTGCAATCAAGAGANAACACAAGAGCATCT
TTCAAACACATGAGGGCCTCCACAGAATGGAGAGGCTGTATTTTGGACCC
ACAGCTTCAAGCGGCGTCTTCCACAACAAGATATGGAAAGCATTTGCTGG
CCTCCAAGGCGTCACTACATTGCACGACAACATCCTAGTCTACGGAAGAG
ACTATAAGGAACATTACAGAAACCTTGCAGCATTCCTGGATCGTTGTAAA
GAGAATGGCACAATCCTCAAACCGTCCAAATCAACGTTGGGACAGACAAG
AATCAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062776-exon-scaffold_371-1491911889:333386..335127 | TCONS_00062776-exon-scaffold_371-1491911889:333386..335127 | Clytia hemisphaerica | exon |
| TCONS_00062776-exon-scaffold_371-1510915933:333386..335127 | TCONS_00062776-exon-scaffold_371-1510915933:333386..335127 | Clytia hemisphaerica | exon |
| TCONS_00062776-exon-scaffold_371-1575043694:333386..335127 | TCONS_00062776-exon-scaffold_371-1575043694:333386..335127 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_371 | supercontig | scaffold_371:333386..335127 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021109 | Peptidase_aspartic_dom |
Blast
The following BLAST results are available for this feature:
|
