TCONS_00062779 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062779
Unique NameTCONS_00062779
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length621

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062779 ID=TCONS_00062779|Name=TCONS_00062779|organism=Clytia hemisphaerica|type=transcript|length=621bp
TTTACAAAGTTCCTCTGTTGAAACAGTTGTAATGCGTTCCCCAGAACCGA
GATTGAAGAAAGCACTATAAGTCACGTTTAACTTTTTCTTGATCTTGTTA
AATTCTTGATGCATTTGGACGCCAAAGCCAGCTTCGAAACTGTATATTGC
ACGGGGATCTTCGATATAAGCTGCTGGATACATGGGACGATCAGTTATAC
TAATAAGCATGATTAAATCTTGTGGCAGAAGTAGAGCACTTAAAAGCCTG
GTCAAATCAAAGGATAAATAAGTCAGAATTAAAAGTCGTTTCTTAGAAAT
GTCCAGATCCCATGAGCCGTTTCGATTTTCACATTTAACTTGGTAGGTAT
CTCTCTCATCTGTGGTAAGCGGGAAAACGGTATTGACAAGCGTCCTGGTG
TTATTTCCAATATCCTTAAAACATAGTTGAACGTCAAACCAGAATTGCTG
GTGTTGATGAACTAGTAGCATTGTTTCTTGATTAATCTTTGCATTATGAC
AATCGAATTCATTCTCCTTGGTACAATTCGTTGTGGTAAATAGACCAAGA
AATTGAAGTCCTAGTTTTCCATCAATAACACCAAAGCTCATGTAAAAACA
AAGCAGTATCAATATAACTGT
Run BLAST on NCBI

protein sequence of TCONS_00062779-protein

>TCONS_00062779-protein ID=TCONS_00062779-protein|Name=TCONS_00062779-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
TVILILLCFYMSFGVIDGKLGLQFLGLFTTTNCTKENEFDCHNAKINQET
MLLVHQHQQFWFDVQLCFKDIGNNTRTLVNTVFPLTTDERDTYQVKCENR
NGSWDLDISKKRLLILTYLSFDLTRLLSALLLPQDLIMLISITDRPMYPA
AYIEDPRAIYSFEAGFGVQMHQEFNKIKKKLNVTYSAFFNLGSGERITTV
STEELCK
Run BLAST on NCBI

transcript from alignment at scaffold_371:417325..417945

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062779 ID=TCONS_00062779|Name=TCONS_00062779|organism=Clytia hemisphaerica|type=transcript|length=621bp|location=Sequence derived from alignment at scaffold_371:417325..417945 (Clytia hemisphaerica)
ACAGTTATATTGATACTGCTTTGTTTTTACATGAGCTTTGGTGTTATTGA
TGGAAAACTAGGACTTCAATTTCTTGGTCTATTTACCACAACGAATTGTA
CCAAGGAGAATGAATTCGATTGTCATAATGCAAAGATTAATCAAGAAACA
ATGCTACTAGTTCATCAACACCAGCAATTCTGGTTTGACGTTCAACTATG
TTTTAAGGATATTGGAAATAACACCAGGACGCTTGTCAATACCGTTTTCC
CGCTTACCACAGATGAGAGAGATACCTACCAAGTTAAATGTGAAAATCGA
AACGGCTCATGGGATCTGGACATTTCTAAGAAACGACTTTTAATTCTGAC
TTATTTATCCTTTGATTTGACCAGGCTTTTAAGTGCTCTACTTCTGCCAC
AAGATTTAATCATGCTTATTAGTATAACTGATCGTCCCATGTATCCAGCA
GCTTATATCGAAGATCCCCGTGCAATATACAGTTTCGAAGCTGGCTTTGG
CGTCCAAATGCATCAAGAATTTAACAAGATCAAGAAAAAGTTAAACGTGA
CTTATAGTGCTTTCTTCAATCTCGGTTCTGGGGAACGCATTACAACTGTT
TCAACAGAGGAACTTTGTAAA

Coding sequence (CDS) from alignment at scaffold_371:417325..417945

>TCONS_00062779 ID=TCONS_00062779|Name=TCONS_00062779|organism=Clytia hemisphaerica|type=CDS|length=621bp|location=Sequence derived from alignment at scaffold_371:417325..417945 (Clytia hemisphaerica)
ACAGTTATATTGATACTGCTTTGTTTTTACATGAGCTTTGGTGTTATTGA
TGGAAAACTAGGACTTCAATTTCTTGGTCTATTTACCACAACGAATTGTA
CCAAGGAGAATGAATTCGATTGTCATAATGCAAAGATTAATCAAGAAACA
ATGCTACTAGTTCATCAACACCAGCAATTCTGGTTTGACGTTCAACTATG
TTTTAAGGATATTGGAAATAACACCAGGACGCTTGTCAATACCGTTTTCC
CGCTTACCACAGATGAGAGAGATACCTACCAAGTTAAATGTGAAAATCGA
AACGGCTCATGGGATCTGGACATTTCTAAGAAACGACTTTTAATTCTGAC
TTATTTATCCTTTGATTTGACCAGGCTTTTAAGTGCTCTACTTCTGCCAC
AAGATTTAATCATGCTTATTAGTATAACTGATCGTCCCATGTATCCAGCA
GCTTATATCGAAGATCCCCGTGCAATATACAGTTTCGAAGCTGGCTTTGG
CGTCCAAATGCATCAAGAATTTAACAAGATCAAGAAAAAGTTAAACGTGA
CTTATAGTGCTTTCTTCAATCTCGGTTCTGGGGAACGCATTACAACTGTT
TCAACAGAGGAACTTTGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039329XLOC_039329Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062779-exon-scaffold_371-1491911889:417325..417945TCONS_00062779-exon-scaffold_371-1491911889:417325..417945Clytia hemisphaericaexon
TCONS_00062779-exon-scaffold_371-1510915933:417325..417945TCONS_00062779-exon-scaffold_371-1510915933:417325..417945Clytia hemisphaericaexon
TCONS_00062779-exon-scaffold_371-1575043694:417325..417945TCONS_00062779-exon-scaffold_371-1575043694:417325..417945Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062779-proteinTCONS_00062779-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_371supercontigscaffold_371:417325..417945 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.344444	0.251915	0.194999	0.190776	0.116126	0.183528	0.996384	1.14009	0.798205	3.95482	0.174484	0.286747	6.75783	2.31953	4.84077	7.7661	3.10287	6.09566	1.83076	7.27988	0.083257	0.12183	1.1848	1.70549	3.05097	2.31035	86.7854	60.8644	0.573459	0.292132
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062779 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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