TCONS_00062780 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062780
Unique NameTCONS_00062780
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length244

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062780 ID=TCONS_00062780|Name=TCONS_00062780|organism=Clytia hemisphaerica|type=transcript|length=244bp
GTAAATCGAAagcaaaaaatagaaaaccaTTCACAGCTAGATATCCTTGG
AAATTTGTCAACACATCTCCATCATCGTACTCAATATCCAAAGGATCGAC
TTCCGTTACAACATACTTCAAATCCTTTAATTGGGTCAAAAATggcaaat
aaaaaatatcaccCATTTTCTCACTATGTGCATTAACAGTACGTTGGAAA
GTTGAAATCGAGCGACTGTCACCAGCTTCAAATATAAAAGATTG
Run BLAST on NCBI

transcript from alignment at scaffold_371:418078..418321

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062780 ID=TCONS_00062780|Name=TCONS_00062780|organism=Clytia hemisphaerica|type=transcript|length=244bp|location=Sequence derived from alignment at scaffold_371:418078..418321 (Clytia hemisphaerica)
CAATCTTTTATATTTGAAGCTGGTGACAGTCGCTCGATTTCAACTTTCCA
ACGTACTGTTAATGCACATAGTGAGAAAATGggtgatattttttatttgc
cATTTTTGACCCAATTAAAGGATTTGAAGTATGTTGTAACGGAAGTCGAT
CCTTTGGATATTGAGTACGATGATGGAGATGTGTTGACAAATTTCCAAGG
ATATCTAGCTGTGAAtggttttctattttttgctTTCGATTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039330XLOC_039330Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062780-exon-scaffold_371-1491911889:418078..418321TCONS_00062780-exon-scaffold_371-1491911889:418078..418321Clytia hemisphaericaexon
TCONS_00062780-exon-scaffold_371-1510915933:418078..418321TCONS_00062780-exon-scaffold_371-1510915933:418078..418321Clytia hemisphaericaexon
TCONS_00062780-exon-scaffold_371-1575043694:418078..418321TCONS_00062780-exon-scaffold_371-1575043694:418078..418321Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_371supercontigscaffold_371:418078..418321 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.843482	0	1.91007	0	0	0	1.08443	1.01523	0	1.76085	0	0.561754	5.60973	2.91288	6.22644	8.7379	3.16599	3.24504	1.79328	5.62961	0	0	0.96712	0.879252	0	2.4247	159.608	107.387	0.936199	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062780 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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