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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062787 ID=TCONS_00062787|Name=TCONS_00062787|organism=Clytia hemisphaerica|type=transcript|length=1334bp
tgagttttttgtgtgtttttttttcacacctaACGTTATGATTCATTCGA
AATAACGTCCGATCATCTTCCACTTTAAGACCCAAAACCGAAAGTGTCCA
AACGAGGCTATTTAGAGACCAGTTCGATTGATGACTGGTTTCCTCTTACA
GAGGATGCTCGGTTCGGTATTGAGCGGTTAAGGAGTCGTCTCGTTAGAAC
CGTCTtaaaaagtgaaagtaaaataaattattatacATGCCGTTTATTAT
CAACACATAAGTTTTCCCAGtattcaaaatgttttaaatacTATTGGCGC
CTGGTCAAATCATTTAGCCTGTGGTCATATTCACAATTAAGTTTACGATT
ATAAAATCTAGATAATTTATAAGTCTTCGAATATATACCACGATTCAGAA
GATCCACCAGTTTTTGACCAACAATTTCAAATCGATGACGGTCTTTTGGT
TTGTAAtcaatgacgtaatcttttctccaTTGGTGATATTTCAAGTAAGA
TCCATCACTGAAGATCTTTTTCAAATAAGCTGCCAAATCACGCAAGTTGT
AATTTCTCGCATTAATGTACGATCGGGGAACAACTAACtttttatcataa
tttgaaCCCCCGTAGACCACAGGAATGGTCCAGCGTTGGAGTGCGTCCCA
ATATTTTTCGGTCACATAATCGTTACACAAACTGTTCTCGAATGCCAGTG
AAAACACAAATTGCCGTAACTTTTGTTcacatttttcagaaaatcttgGA
CATACTTCATACTGCCGAAATTTCCGGGCACATTTCCCATATATTGTAAC
TGGCATATATTGTAGGAGTCCAGAAACCACAGAATCACGTGCTATATTAC
AATGGCTTGCTATCCATACAGCAGAACGGTTCTTTCCGGTTAATGAGAGT
TCCGCATTCGGATTCGGATCCGACCGAGTCTTCTTACGGTAATACCCATA
GGATAACATTATGTCAGACTTTCGTAATGGAGTCATCGTAAGATTGAAAA
TTCCATCAAATTTCTTCTTTAACACGTTAATCGTGTTGAACGGGCTCTCC
CTGTTATAGTAAGCCCATAATTGTGTCTTTGGCACTTCTTTTCTGGCGCG
TCGTAAGATCTTTGGTCCAGGCATATCatgaacataaaaaataatgacAT
CCCAGCCAAGTAAATATTTAGTGATTTGCTTTCGGTATACGACACTCTTA
GTTTCATCATTACAAAAAGAGTAGAGTGGAGCCAAGCTTTGAAGAACGAA
TTCTGTACCTGTTACGTTTACGTAGAGGGTGCACGAGTAaaataaaaatc
gaaatttgttGGCATTTTGTTTCTTGTATGGTCG Run BLAST on NCBI protein sequence of TCONS_00062787-protein >TCONS_00062787-protein ID=TCONS_00062787-protein|Name=TCONS_00062787-protein|organism=Clytia hemisphaerica|type=polypeptide|length=347bp
RPYKKQNANKFRFLFYSCTLYVNVTGTEFVLQSLAPLYSFCNDETKSVVY
RKQITKYLLGWDVIIFYVHDMPGPKILRRARKEVPKTQLWAYYNRESPFN
TINVLKKKFDGIFNLTMTPLRKSDIMLSYGYYRKKTRSDPNPNAELSLTG
KNRSAVWIASHCNIARDSVVSGLLQYMPVTIYGKCARKFRQYEVCPRFSE
KCEQKLRQFVFSLAFENSLCNDYVTEKYWDALQRWTIPVVYGGSNYDKKL
VVPRSYINARNYNLRDLAAYLKKIFSDGSYLKYHQWRKDYVIDYKPKDRH
RFEIVGQKLVDLLNRGIYSKTYKLSRFYNRKLNCEYDHRLNDLTRRQ Run BLAST on NCBI transcript from alignment at scaffold_371:583470..584803 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062787 ID=TCONS_00062787|Name=TCONS_00062787|organism=Clytia hemisphaerica|type=transcript|length=1334bp|location=Sequence derived from alignment at scaffold_371:583470..584803 (Clytia hemisphaerica)
CGACCATACAAGAAACAAAATGCCaacaaatttcgatttttatttTACTC
GTGCACCCTCTACGTAAACGTAACAGGTACAGAATTCGTTCTTCAAAGCT
TGGCTCCACTCTACTCTTTTTGTAATGATGAAACTAAGAGTGTCGTATAC
CGAAAGCAAATCACTAAATATTTACTTGGCTGGGATgtcattatttttta
tgttcatGATATGCCTGGACCAAAGATCTTACGACGCGCCAGAAAAGAAG
TGCCAAAGACACAATTATGGGCTTACTATAACAGGGAGAGCCCGTTCAAC
ACGATTAACGTGTTAAAGAAGAAATTTGATGGAATTTTCAATCTTACGAT
GACTCCATTACGAAAGTCTGACATAATGTTATCCTATGGGTATTACCGTA
AGAAGACTCGGTCGGATCCGAATCCGAATGCGGAACTCTCATTAACCGGA
AAGAACCGTTCTGCTGTATGGATAGCAAGCCATTGTAATATAGCACGTGA
TTCTGTGGTTTCTGGACTCCTACAATATATGCCAGTTACAATATATGGGA
AATGTGCCCGGAAATTTCGGCAGTATGAAGTATGTCcaagattttctgaa
aaatgtgAACAAAAGTTACGGCAATTTGTGTTTTCACTGGCATTCGAGAA
CAGTTTGTGTAACGATTATGTGACCGAAAAATATTGGGACGCACTCCAAC
GCTGGACCATTCCTGTGGTCTACGGGGGttcaaattatgataaaaaGTTA
GTTGTTCCCCGATCGTACATTAATGCGAGAAATTACAACTTGCGTGATTT
GGCAGCTTATTTGAAAAAGATCTTCAGTGATGGATCTTACTTGAAATATC
ACCAAtggagaaaagattacgtcattgaTTACAAACCAAAAGACCGTCAT
CGATTTGAAATTGTTGGTCAAAAACTGGTGGATCTTCTGAATCGTGGTAT
ATATTCGAAGACTTATAAATTATCTAGATTTTATAATCGTAAACTTAATT
GTGAATATGACCACAGGCTAAATGATTTGACCAGGCGCCAATAgtattta
aaacattttgaataCTGGGAAAACTTATGTGTTGATAATAAACGGCATgt
ataataatttattttactttcactttttaAGACGGTTCTAACGAGACGAC
TCCTTAACCGCTCAATACCGAACCGAGCATCCTCTGTAAGAGGAAACCAG
TCATCAATCGAACTGGTCTCTAAATAGCCTCGTTTGGACACTTTCGGTTT
TGGGTCTTAAAGTGGAAGATGATCGGACGTTATTTCGAATGAATCATAAC
GTtaggtgtgaaaaaaaaacacacaaaaaactca Coding sequence (CDS) from alignment at scaffold_371:583470..584803 >TCONS_00062787 ID=TCONS_00062787|Name=TCONS_00062787|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at scaffold_371:583470..584803 (Clytia hemisphaerica)
CGACCATACAAGAAACAAAATGCCaacaaatttcgatttttatttTACTC
GTGCACCCTCTACGTAAACGTAACAGGTACAGAATTCGTTCTTCAAAGCT
TGGCTCCACTCTACTCTTTTTGTAATGATGAAACTAAGAGTGTCGTATAC
CGAAAGCAAATCACTAAATATTTACTTGGCTGGGATgtcattatttttta
tgttcatGATATGCCTGGACCAAAGATCTTACGACGCGCCAGAAAAGAAG
TGCCAAAGACACAATTATGGGCTTACTATAACAGGGAGAGCCCGTTCAAC
ACGATTAACGTGTTAAAGAAGAAATTTGATGGAATTTTCAATCTTACGAT
GACTCCATTACGAAAGTCTGACATAATGTTATCCTATGGGTATTACCGTA
AGAAGACTCGGTCGGATCCGAATCCGAATGCGGAACTCTCATTAACCGGA
AAGAACCGTTCTGCTGTATGGATAGCAAGCCATTGTAATATAGCACGTGA
TTCTGTGGTTTCTGGACTCCTACAATATATGCCAGTTACAATATATGGGA
AATGTGCCCGGAAATTTCGGCAGTATGAAGTATGTCcaagattttctgaa
aaatgtgAACAAAAGTTACGGCAATTTGTGTTTTCACTGGCATTCGAGAA
CAGTTTGTGTAACGATTATGTGACCGAAAAATATTGGGACGCACTCCAAC
GCTGGACCATTCCTGTGGTCTACGGGGGttcaaattatgataaaaaGTTA
GTTGTTCCCCGATCGTACATTAATGCGAGAAATTACAACTTGCGTGATTT
GGCAGCTTATTTGAAAAAGATCTTCAGTGATGGATCTTACTTGAAATATC
ACCAAtggagaaaagattacgtcattgaTTACAAACCAAAAGACCGTCAT
CGATTTGAAATTGTTGGTCAAAAACTGGTGGATCTTCTGAATCGTGGTAT
ATATTCGAAGACTTATAAATTATCTAGATTTTATAATCGTAAACTTAATT
GTGAATATGACCACAGGCTAAATGATTTGACCAGGCGCCAATAg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062787-exon-scaffold_371-1491911889:583470..584803 | TCONS_00062787-exon-scaffold_371-1491911889:583470..584803 | Clytia hemisphaerica | exon |
| TCONS_00062787-exon-scaffold_371-1510915933:583470..584803 | TCONS_00062787-exon-scaffold_371-1510915933:583470..584803 | Clytia hemisphaerica | exon |
| TCONS_00062787-exon-scaffold_371-1575043694:583470..584803 | TCONS_00062787-exon-scaffold_371-1575043694:583470..584803 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_371 | supercontig | scaffold_371:583470..584803 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008417 | fucosyltransferase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008417 |
fucosyltransferase activity |
Blast
BLAST of TCONS_00062787 vs. Swiss-Prot (Human)
Match: FUT5 (Alpha-(1,3)-fucosyltransferase 5 OS=Homo sapiens GN=FUT5 PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 2.004e-25 Identity = 81/262 (30.92%), Postives = 134/262 (51.15%), Query Frame = -1
Query: 471 LAPLYSFCNDETKSVVYRKQITKYLLGWDVIIFYVHDMPGPKILRRARKEVPKTQLWAYYNRESPFNTINVLKKKFDGIFNLTMTPLRKSDIMLSYGYYRKKTRSDPNPNAELSLTGKNRSAVWIASHC--NIARDSVVSGLLQYMPVTIYGKCARKFRQYEVCPRFSEKCEQKLRQFVFSLAFENSLCNDYVTEKYW-DALQRWTIPVVYGG--SNYDKKLVVPRSYINARNY-NLRDLAAYLKKIFSDGS-YLKYHQWRK 1235
+ P + CN S VY + + WD++ ++P P P+ Q W +++ ESP N ++ + DG FNLTM+ SDI YG+ + +P L+L+ K W S+ + AR L ++ V +YG R ++ P+ + + L ++ F LAFENSL DY+TEK W +AL+ W +PVV G SNY+ + + P ++I+ ++ + +DLA YL+++ D + YL Y +WR+
Sbjct: 97 MVPGAADCNITADSSVYPQADAVIVHHWDIMYNPSANLPPPT--------RPQGQRWIWFSMESPSNCRHL--EALDGYFNLTMSYRSDSDIFTPYGWLEPWSGQPAHP--PLNLSAKTELVAWAVSNWKPDSARVRYYQSLQAHLKVDVYG------RSHKPLPKGTMM--ETLSRYKFYLAFENSLHPDYITEKLWRNALEAWAVPVVLGPSRSNYE-RFLPPDAFIHVDDFQSPKDLARYLQELDKDHARYLSYFRWRE 337
The following BLAST results are available for this feature:
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