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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062788 ID=TCONS_00062788|Name=TCONS_00062788|organism=Clytia hemisphaerica|type=transcript|length=323bp
GCGGTGGATATCAACTTGTGGAGGCTTCGAGGAAACCTTCCCTCTGACag
actcaaaaaatattttcttgattaAACTTATACAGCTGCAGAACTTGAAT
ATTTTTGGCACTATACTTGATTTGGTTGAAAATAAAGCACTTGGAAGATG
GCTGAGATTTAAAAAATGGAGCAATTTGGACACCCAGTTTTTTTTGGAGG
ATATCAAAGACATGCCAGttctcttccaAATGGAAATTACCTGTGCAGTT
CCATTTCTCTCCATCTTGTGGGCAACAATTCTTTGATGGATACACTTCGA
TGCCTTGCACGTGTGCAGAACTT Run BLAST on NCBI transcript from alignment at scaffold_372:9397..11781+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062788 ID=TCONS_00062788|Name=TCONS_00062788|organism=Clytia hemisphaerica|type=transcript|length=2385bp|location=Sequence derived from alignment at scaffold_372:9397..11781+ (Clytia hemisphaerica)
GCGGTGGATATCAACTTGTGGAGGCTTCGAGGAAACCTTCCCTCTGACag
actcaaaaaatattttcttgattaAACTTATACAGCTGCAGAACTTGAAT
ATTTTTGGCACTATACTTGATTTGGTTGAAAATAAAGCACTTGGAAGATG
GCTGAGATTTAAAAAATGGAGCAATTTGGACACCCAGTTTTTTTTGGAGG
ATATCAAAGACATGCCAGGTGAGTGAAAAATCATTGGTTTTACTAGGTCT
TCAGTTCTCTGTTTTTTGTTATGAGTCGACAAAGAGGACCCAAATTGACA
GATTTTTTAACAGTGTCGCACTCTGAATTCTTACTTCATAATTTATTTTT
CGAAGTTGGAAGGGTCTCAAATTTCACTGAGAGTTTGCAAGAATAGTTCC
TTGACTGAAGGGTGACTTACTTTTGGATCTGTTCAATCTTTTTgattaaa
acttttcaaaaaaattgaacgaTAATTAAAATATTATAGCAGTAACCGTC
CTAAAAACTATCTTAGTTTTCGTTAGGCTGAATCTGAGGCTGGGTCAGTC
TGGATGCAAGCAATTTATTATAATGACCTTTGTAAAATGTTGTCCCTGTC
AGCTAGAACTagttaacttttttttaaatatggtaCTACTTCAGAGTAAA
TTTCCGCTTGTTTTAACGACCCTGAAACAATGCACCGGATTGTCCAGCCG
GTGTTTTGTCGGCAGTGGCGAAAAGTTTTCTGTCAATGCACCGAACTGTT
GTCTGTTGTTTTGCTGGTGGAGAAAAGTTTTCAGTAACAGACATTATTGA
AGGGCATTTAggcaaatccttgcatttgcacaggGTTCGATACGTTGCAA
ATGCAACGGATCAAAAACAAAAGGAACGTGTAAACTCTTTGCAAATTTAC
TGAGCAGTGATTgaatagatgaaatttttttcaatagacAAAATCCTTTA
TTAACAAATGAAGAATCTTGTAAATATGAGATGAAAGTCCCATTTTTACC
TTCATTCCCccgttttcagttttcaaagtaaaaattgGCGTATTTGCCTA
ACGAgttctagctcatttgcacagggtcgGAGAAAAAccgttgcaaatgc
acaccacgtgcaaatgcaaggatttgccTGACTGACGgttgtgaaaaaaa
atctaaaaaacatTGACATTATGTTGTCTGGTGCTGTTATTTTCACTGTT
TTGCTATGTTCGGTGTCGAGAAATTATTGACTGGAGCGAGAGAGTTTGAT
TTCCAGAACACTTTATAATTTTCATGAATTATTTTCTGAACTATAATTAT
TATATGAATAAGTTACAAATGAATAATTTCAGTGAATAAAGGGAatcaat
aataataaaataaatgcTTACCCGAATCTATTTAATTATTATATTTATAG
CAATAAGTTATAAACATTGGTACTGTTGATAGCTTTGGTATTTTAGATTA
CTGCTTGATTGTTTatgaaaatttgtcaaacagtttgatatttttcaatt
ttgaagtaCCGTATTTCCTCTAGGGGCCATTCAAAAATTACGTCCGGTAC
GTTCGtccaaatagaccttttttcaaagaggacgtcctgttgaataatta
tgtagtccagccataaaaacaatgatagagccatgcataattactgtatc
atgcatattgtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatcatgcatattg
taataattatgcatggttttatcattgtttttctgctggactacataatt
attcaacagggtggcctctttgaaaaaaggtctattcaatcGGGGTACGT
AGTTACTGTTTGTTTGGCCAATCACTCTGGCTAAGAAAAAGTTgacgaca
ggagatgaatttgtggcaatttaagaggcaaagggacaaccaacctattg
tggttttattttgaaataagagagaaaaaaaattacattgaaaattttgt
gattctgaccttgacaccctaatccctaatgtttttaatatgttttggcc
ggttaaaaattttttctggggAGGGAAAAAGAGCTGTGTGGGTTTTTCGC
ACACTATTTTGAGGTACACAAACAGATTGTATTTGACTGTGTTTAGTTTG
CGGACCAGCACCTGCCAGTCAAGTAGTGGTCATAAAAACTGCacaacaat
cttaaaaatgatttctctattttgttttagttctcttccaAATGGAAATT
ACCTGTGCAGTTCCATTTCTCTCCATCTTGTGGGCAACAATTCTTTGATG
GATACACTTCGATGCCTTGCACGTGTGCAGAACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062788-exon-scaffold_372-1491911889:9397..9614 | TCONS_00062788-exon-scaffold_372-1491911889:9397..9614 | Clytia hemisphaerica | exon |
| TCONS_00062788-exon-scaffold_372-1510915933:9397..9614 | TCONS_00062788-exon-scaffold_372-1510915933:9397..9614 | Clytia hemisphaerica | exon |
| TCONS_00062788-exon-scaffold_372-1575043694:9397..9614 | TCONS_00062788-exon-scaffold_372-1575043694:9397..9614 | Clytia hemisphaerica | exon |
| TCONS_00062788-exon-scaffold_372-1491911889:11677..11781 | TCONS_00062788-exon-scaffold_372-1491911889:11677..11781 | Clytia hemisphaerica | exon |
| TCONS_00062788-exon-scaffold_372-1510915933:11677..11781 | TCONS_00062788-exon-scaffold_372-1510915933:11677..11781 | Clytia hemisphaerica | exon |
| TCONS_00062788-exon-scaffold_372-1575043694:11677..11781 | TCONS_00062788-exon-scaffold_372-1575043694:11677..11781 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_372 | supercontig | scaffold_372:9397..11781 + |
Blast
The following BLAST results are available for this feature:
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