TCONS_00062789 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062789
Unique NameTCONS_00062789
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1210

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062789 ID=TCONS_00062789|Name=TCONS_00062789|organism=Clytia hemisphaerica|type=transcript|length=1210bp
CTGACAACCAACCAATAGTTCCGAAAACGAGGGAGAGTCCGTTCGAAAGA
ATCACTCGAAACCGATGAGCAGGCCGAAAACAGGTTTCGAAAAGAACAAG
AGAAGATAAAATCTGGAAAGAAAAAGCCGCATAACCATGGTAACGATAGA
AATTACGATTGGAATAGAGAAGGATGTTTACGAGAGGTTAAGAAATTGAA
AGATGGGGACGTGATAAACTATTCGGTACTTGGAAAAACATATGGGTTGA
GGaacaaaaatggaaaatctGCTAGAAACCGAGGCCAActtgtcaaacaa
tttttgatcaaAAACTAAATTGACGTTTCAAGATTTCGTCCCGCAAAAAT
CAACCGTACAAGTAAAGCAGGAAAAGCTAGATTAAAGCTACCCAATTCGA
ACGTTTCTGTACCAATTGAGATGACCAATGAAACTCTCTCTGAAGTTTTA
CGTGANGTACCAATTGAGATGACCAATGAAACTCTCTCTGAAGTTTTACG
TGAAGAAATTGCAAAGGGCGTTTATTCAGTTGGAGAGTTATTGATGCCAC
ACACGTTCGAGAAACATATGGTTCTAAAAGATGGCGAGATTGTTATCGAA
AGTTTCTCAGTTCAAGGAAGAAAGATTCCTCTTAAAGAAATACGGGAGTC
ATTTTTACGCTATCACCGGGAGTACTTACGCTTGATTTCAGACGAGGATT
ATAGCTCCATGAGTATCGAAAaacttgaatttgaatttgagagGCTTGAT
GAACCTTTTGAAAGAGACCTGCCAAAGGATAAACTTATCGAACGTCTTAA
AAATTTCCACCGTAAACGTCACTTGACATGCTGGCACGACGGTTCATCGA
TATCGAATCATGGTCACCTTCAAATCACTTTTAACGTTACCTACGACAAG
GCCTTGTTTTACACGAATGAAGAGTACCGTGAAAAGTTCCATAAAAACGT
GAACGTTCAAGCAAAAATTAAATCTCCAAAGATGTATTTGCTAGCCAGAT
GTCCTTCAAGTGAAGAGCAACTTTTCTATAGCGAAACACGTTTGGAAGAC
ATCAAGTCGTTGAGCTTTGACTTAGAAGTAGATGGAACAATAGTTAAAGA
TGTCATGcgcttttttaaagGTGACGGTCCAGCTTGTCAGACTGAGTGTG
GGCAGCAAAAAGGTGGTAACTATTTTTGTTGGGTTTGTCCTATATTAGCA
TCACGATCTA
Run BLAST on NCBI

protein sequence of TCONS_00062789-protein

>TCONS_00062789-protein ID=TCONS_00062789-protein|Name=TCONS_00062789-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MTNETLSEVLRXVPIEMTNETLSEVLREEIAKGVYSVGELLMPHTFEKHM
VLKDGEIVIESFSVQGRKIPLKEIRESFLRYHREYLRLISDEDYSSMSIE
KLEFEFERLDEPFERDLPKDKLIERLKNFHRKRHLTCWHDGSSISNHGHL
QITFNVTYDKALFYTNEEYREKFHKNVNVQAKIKSPKMYLLARCPSSEEQ
LFYSETRLEDIKSLSFDLEVDGTIVKDVMRFFKGDGPACQTECGQQKGGN
YFCWVCPILASRS
Run BLAST on NCBI

transcript from alignment at scaffold_372:29493..32654+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062789 ID=TCONS_00062789|Name=TCONS_00062789|organism=Clytia hemisphaerica|type=transcript|length=3162bp|location=Sequence derived from alignment at scaffold_372:29493..32654+ (Clytia hemisphaerica)
CTGACAACCAACCAATAGTTCCGAAAACGAGGGAGAGTCCGTTCGAAAGA
ATCACTCGAAACCGATGAGCAGGCCGAAAACAGGTTTCGAAAAGAACAAG
AGAAGATAAAATCTGGAAAGAAAAAGCCGCATAACCATGGTAACGATAGA
AATTACGATTGGAATAGAGAAGGATGTTTACGAGAGGTTAAGAAATTGAA
AGATGGGGACGTGATAAACTATTCGGTACTTGGAAAAACATATGGGTTGA
GGaacaaaaatggaaaatctGCTAGAAACCGAGGCCAActtgtcaaacaa
tttttgatcaaAAACTAAATTGACGTTTCAAGATTTCGTCCCGCAAAAAT
CAACCGTACAAGTAAAGCAGGAAAAGCTAGATTAAAGTATGTATATTTCG
ATATAAGTTCAACTCGTGAGTTCTAAATTTATAGAATTAGAATTGCAGAT
TACCACTGACTACCTCTGAAATCCTTCGTGATTCATTAGTGCGTTAATAA
TGATAATTGTTAGTTCTATGTCTGTACTTGTCTGTACTGATCTGGTCTTG
TGAAGGTATCCAACCACACATGTTCTCTTTACATCATCAGGCTACCCAAT
TCGAACGTTTCTGTACCAATTGAGATGACCAATGAAACTCTCTCTGAAGT
TTTACGTGANGTACCAATTGAGATGACCAATGAAACTCTCTCTGAAGTTT
TACGTGAAGAAATTGCAAAGGTATATATATCCtggtatatttcttttttt
ttgctacaATATAATTAAAATACAGTGTGCGATGTTCGACCGTTATTTTA
GGCCCTGTAATTATTACTGGTCAGTTCAGGCAACAAGAGCTGAGTAAAAG
GTAAGAGCTAATCTAATAGAAAATGCATCAACCCTTGCTGTTCACTCTGT
TTCCAATCTTTTCCTACTAAAATTTAGGGCGTTTATTCAGTTGGAGAGTT
ATTGATGCCACACACGTTCGAGAAACATATGGTTCTAAAAGATGGCGAGA
TTGTTATCGAAAGTTTCTCAGTTCAAGGTAAAATCTATTTCACCCTGTCC
CAGTGGCCCAtttcttttgtcattcaattcaaaCTTCATACTTCTAGAAA
ATATTCTAAATAGCTCGCTTTATTCTCAATAACAATACATTTTCTTACTA
TCGCCCAACTGGtcttcaaaaaaactccaattGGGACACAGAGAAAAGGG
TGTTTTACTATTGATATCCTTTGTTTAATGACCCCCTATCCCAGACCTGC
TTGGATTTTTCACCGTAACAATAACAGACCAACCAAACCAAAAAACCAAC
CAAACTCGGTGAGGATTGATATTCCTTTCTATGTTTCTTATAGCTagaga
tttgtttttttttcgggcCAAACATTCTGTGGGAATGGAAAAATAGCACA
TTTTTTTGCCACGGCGATTTGGAATCGGATTCAATNTagagatttgtttt
tttttcgggcCAAACATTCTGTGGGAATGGAAAAATAGCACATTTTTTTG
CCACGGCGATTTGGAATCGGATTCAATTTTGCTTTTTGAAGGGGCATAGC
ATCGAGGAAAAGCTTTGTcaacttaattttttgttttgtatccGTTGAAT
ACCATGAAGATGCTAATATAACACCAATTTTCAGGTCATTTCTTCCATCT
CGTTTTTCTTAAATTGAATTCCGATGCCGTATAACCCTTCGGGGGACTTG
TGTATCCCTTCGGGGGAAAATTGAGTCTAATTTTCAGATATTGAGTTAGT
TTAAGaaataagaacataaaactAACTTGGCTTTAGCTATGCtaattgaa
gaaaaagaaatgaatCCGGTAAATTCATAGTTCCTAACTCAAATCGCCGT
GTGCAGCGATGGTATGTTTGTTACATCATTTTTTCACTTGGGAAAAGAAT
TGAGTATAATTGTCCAGttgggacgaaatttttgtcaattcttcCAGTGA
AAGAGCTCCcagtgagaaaggggtgtttgaAGTATTTTTTGAATTGTGTT
TGCAGAATAACGTTTTTaaccttttgttttttttgcattatttttgattt
ttgatgggAATATGAATGTCCAGCGAGATACTTCATTGTGGAAGATTATT
TGCTGTGCTTTTGTTAATCTCCTTGAGGTCCATCACTGAGTTTTAATTAT
CTTATTATTTTTAGGAAGAAAGATTCCTCTTAAAGAAATACGGGAGTCAT
TTTTACGCTATCACCGGGAGTACTTACGCTTGATTTCAGACGAGGATTAT
AGCTCCATGAGTATCGAAAaacttgaatttgaatttgagagGCTTGATGA
ACCTTTTGAAAGAGACCTGCCAAAGGATAAACTTATCGAACGTCTTAAAA
ATTTCCACCGTAAACGTCACTTGACATGCTGGCACGACGGTTCATCGATA
TCGAATCATGGTCACCTTCAAATCACTTTTAACGTTACCTACGACAAGGC
CTTGTTTTACACGAATGAAGAGTACCGTGAAAAGTTCCGTATGTATTTTT
TAGTTAAACTAAATATACCCATGAATTTCCTATTCCTCTATTCTTAACTT
CTCGTTATTAAAACGTATTACATCAGCTCAGTCTTGTCTACGGCTATGGT
AATTACGCTAGTCAGTTAATGAAAGcataaaatgttttcttataatttca
gATAAAAACGTGAACGTTCAAGCAAAAATTAAATCTCCAAAGATGTATTT
GCTAGCCAGATGTCCTTCAAGTGAAGAGCAACTTTTCTATAGCGAAACAC
GTTTGGAAGACATCAAGTCGTTGAGCTTTGACTTAGAAGTAGATGGAACA
ATAGTTAAAGATGTCATGcgcttttttaaaggtttgttttaaAAAACCCA
TGGTGTTTATTATAAAACTTATATATTTTTCTGATGAGACTACTTaatga
ataaaaacaaactttcccTGTTGTTTGAAGGTCTTTTAGACTTTGAAAGT
TAATTCATTTACATCTTTTACATTCATTTACAATATCACTTGCATTAAAC
TCAGCCAAATTCAGCTAGTTGAGCTAATTACCCCACAATAGATTACTTAT
AGATTATATTTAAATCTTTCAGGTGACGGTCCAGCTTGTCAGACTGAGTG
TGGGCAGCAAAAAGGTGGTAACTATTTTTGTTGGGTTTGTCCTATATTAG
CATCACGATCTA

Coding sequence (CDS) from alignment at scaffold_372:29493..32654+

>TCONS_00062789 ID=TCONS_00062789|Name=TCONS_00062789|organism=Clytia hemisphaerica|type=CDS|length=3945bp|location=Sequence derived from alignment at scaffold_372:29493..32654+ (Clytia hemisphaerica)
ATGACCAATGAAACTCTCTCTGAAGTTTTACGTGANGTACCAATTGAGAT
GACCAATGAAACTCTCTCTGAAGTTTTACGTGAAGAAATTGCAAAGGGCG
TTTATTCAGTTGGAGAGTTATTGATGCCACACACGTTCGAGAAACATATG
GTTCTAAAAGATGGCGAGATTGTTATCGAAAGTTTCTCAGTTCAAGGAAG
AAAGATTCCTCTTAAAGAAATACGGGAGTCATTTTTACGCTATCACCGGG
AGTACTTACGCTTGATTTCAGACGAGGATTATAGCTCCATGAGTATCGAA
AaacttgaatttgaatttgagagGCTTGATGAACCTTTTGAAAGAGACCT
GCCAAAGGATAAACTTATCGAACGTCTTAAAAATTTCCACCGTAAACGTC
ACTTGACATGCTGGCACGACGGTTCATCGATATCGAATCATGGTCACCTT
CAAATCACTTTTAACGTTACCTACGACAAGGCCTTGTTTTACACGAATGA
AGAGTACCGTGAAAAGTTCCATAAAAACGTGAACGTTCAAGCAAAAATTA
AATCTCCAAAGATGTATTTGCTAGCCAGATGTCCTTCAAGTGAAGAGCAA
CTTTTCTATAGCGAAACACGTTTGGAAGACATCAAGTCGTTGAGCTTTGA
CTTAGAAGTAGATGGAACAATAGTTAAAGATGTCATGcgcttttttaaag
GTGACGGTCCAGCTTGTCAGACTGAGTGTGGGCAGCAAAAAGGTGGTAAC
TATTTTTGTTGGGTTTGTCCTATATTAGCATCACGATCTATGACCAATGA
AACTCTCTCTGAAGTTTTACGTGANGTACCAATTGAGATGACCAATGAAA
CTCTCTCTGAAGTTTTACGTGAAGAAATTGCAAAGGGCGTTTATTCAGTT
GGAGAGTTATTGATGCCACACACGTTCGAGAAACATATGGTTCTAAAAGA
TGGCGAGATTGTTATCGAAAGTTTCTCAGTTCAAGGAAGAAAGATTCCTC
TTAAAGAAATACGGGAGTCATTTTTACGCTATCACCGGGAGTACTTACGC
TTGATTTCAGACGAGGATTATAGCTCCATGAGTATCGAAAaacttgaatt
tgaatttgagagGCTTGATGAACCTTTTGAAAGAGACCTGCCAAAGGATA
AACTTATCGAACGTCTTAAAAATTTCCACCGTAAACGTCACTTGACATGC
TGGCACGACGGTTCATCGATATCGAATCATGGTCACCTTCAAATCACTTT
TAACGTTACCTACGACAAGGCCTTGTTTTACACGAATGAAGAGTACCGTG
AAAAGTTCCATAAAAACGTGAACGTTCAAGCAAAAATTAAATCTCCAAAG
ATGTATTTGCTAGCCAGATGTCCTTCAAGTGAAGAGCAACTTTTCTATAG
CGAAACACGTTTGGAAGACATCAAGTCGTTGAGCTTTGACTTAGAAGTAG
ATGGAACAATAGTTAAAGATGTCATGcgcttttttaaagGTGACGGTCCA
GCTTGTCAGACTGAGTGTGGGCAGCAAAAAGGTGGTAACTATTTTTGTTG
GGTTTGTCCTATATTAGCATCACGATCTATGACCAATGAAACTCTCTCTG
AAGTTTTACGTGANGTACCAATTGAGATGACCAATGAAACTCTCTCTGAA
GTTTTACGTGAAGAAATTGCAAAGGGCGTTTATTCAGTTGGAGAGTTATT
GATGCCACACACGTTCGAGAAACATATGGTTCTAAAAGATGGCGAGATTG
TTATCGAAAGTTTCTCAGTTCAAGGAAGAAAGATTCCTCTTAAAGAAATA
CGGGAGTCATTTTTACGCTATCACCGGGAGTACTTACGCTTGATTTCAGA
CGAGGATTATAGCTCCATGAGTATCGAAAaacttgaatttgaatttgaga
gGCTTGATGAACCTTTTGAAAGAGACCTGCCAAAGGATAAACTTATCGAA
CGTCTTAAAAATTTCCACCGTAAACGTCACTTGACATGCTGGCACGACGG
TTCATCGATATCGAATCATGGTCACCTTCAAATCACTTTTAACGTTACCT
ACGACAAGGCCTTGTTTTACACGAATGAAGAGTACCGTGAAAAGTTCCAT
AAAAACGTGAACGTTCAAGCAAAAATTAAATCTCCAAAGATGTATTTGCT
AGCCAGATGTCCTTCAAGTGAAGAGCAACTTTTCTATAGCGAAACACGTT
TGGAAGACATCAAGTCGTTGAGCTTTGACTTAGAAGTAGATGGAACAATA
GTTAAAGATGTCATGcgcttttttaaagGTGACGGTCCAGCTTGTCAGAC
TGAGTGTGGGCAGCAAAAAGGTGGTAACTATTTTTGTTGGGTTTGTCCTA
TATTAGCATCACGATCTATGACCAATGAAACTCTCTCTGAAGTTTTACGT
GANGTACCAATTGAGATGACCAATGAAACTCTCTCTGAAGTTTTACGTGA
AGAAATTGCAAAGGGCGTTTATTCAGTTGGAGAGTTATTGATGCCACACA
CGTTCGAGAAACATATGGTTCTAAAAGATGGCGAGATTGTTATCGAAAGT
TTCTCAGTTCAAGGAAGAAAGATTCCTCTTAAAGAAATACGGGAGTCATT
TTTACGCTATCACCGGGAGTACTTACGCTTGATTTCAGACGAGGATTATA
GCTCCATGAGTATCGAAAaacttgaatttgaatttgagagGCTTGATGAA
CCTTTTGAAAGAGACCTGCCAAAGGATAAACTTATCGAACGTCTTAAAAA
TTTCCACCGTAAACGTCACTTGACATGCTGGCACGACGGTTCATCGATAT
CGAATCATGGTCACCTTCAAATCACTTTTAACGTTACCTACGACAAGGCC
TTGTTTTACACGAATGAAGAGTACCGTGAAAAGTTCCATAAAAACGTGAA
CGTTCAAGCAAAAATTAAATCTCCAAAGATGTATTTGCTAGCCAGATGTC
CTTCAAGTGAAGAGCAACTTTTCTATAGCGAAACACGTTTGGAAGACATC
AAGTCGTTGAGCTTTGACTTAGAAGTAGATGGAACAATAGTTAAAGATGT
CATGcgcttttttaaagGTGACGGTCCAGCTTGTCAGACTGAGTGTGGGC
AGCAAAAAGGTGGTAACTATTTTTGTTGGGTTTGTCCTATATTAGCATCA
CGATCTATGACCAATGAAACTCTCTCTGAAGTTTTACGTGANGTACCAAT
TGAGATGACCAATGAAACTCTCTCTGAAGTTTTACGTGAAGAAATTGCAA
AGGGCGTTTATTCAGTTGGAGAGTTATTGATGCCACACACGTTCGAGAAA
CATATGGTTCTAAAAGATGGCGAGATTGTTATCGAAAGTTTCTCAGTTCA
AGGAAGAAAGATTCCTCTTAAAGAAATACGGGAGTCATTTTTACGCTATC
ACCGGGAGTACTTACGCTTGATTTCAGACGAGGATTATAGCTCCATGAGT
ATCGAAAaacttgaatttgaatttgagagGCTTGATGAACCTTTTGAAAG
AGACCTGCCAAAGGATAAACTTATCGAACGTCTTAAAAATTTCCACCGTA
AACGTCACTTGACATGCTGGCACGACGGTTCATCGATATCGAATCATGGT
CACCTTCAAATCACTTTTAACGTTACCTACGACAAGGCCTTGTTTTACAC
GAATGAAGAGTACCGTGAAAAGTTCCATAAAAACGTGAACGTTCAAGCAA
AAATTAAATCTCCAAAGATGTATTTGCTAGCCAGATGTCCTTCAAGTGAA
GAGCAACTTTTCTATAGCGAAACACGTTTGGAAGACATCAAGTCGTTGAG
CTTTGACTTAGAAGTAGATGGAACAATAGTTAAAGATGTCATGcgctttt
ttaaagGTGACGGTCCAGCTTGTCAGACTGAGTGTGGGCAGCAAAAAGGT
GGTAACTATTTTTGTTGGGTTTGTCCTATATTAGCATCACGATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039339XLOC_039339Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062789-exon-scaffold_372-1491911889:29493..29878TCONS_00062789-exon-scaffold_372-1491911889:29493..29878Clytia hemisphaericaexon
TCONS_00062789-exon-scaffold_372-1510915933:29493..29878TCONS_00062789-exon-scaffold_372-1510915933:29493..29878Clytia hemisphaericaexon
TCONS_00062789-exon-scaffold_372-1575043694:29493..29878TCONS_00062789-exon-scaffold_372-1575043694:29493..29878Clytia hemisphaericaexon
TCONS_00062789-exon-scaffold_372-1491911889:30083..30212TCONS_00062789-exon-scaffold_372-1491911889:30083..30212Clytia hemisphaericaexon
TCONS_00062789-exon-scaffold_372-1510915933:30083..30212TCONS_00062789-exon-scaffold_372-1510915933:30083..30212Clytia hemisphaericaexon
TCONS_00062789-exon-scaffold_372-1575043694:30083..30212TCONS_00062789-exon-scaffold_372-1575043694:30083..30212Clytia hemisphaericaexon
TCONS_00062789-exon-scaffold_372-1491911889:30420..30519TCONS_00062789-exon-scaffold_372-1491911889:30420..30519Clytia hemisphaericaexon
TCONS_00062789-exon-scaffold_372-1510915933:30420..30519TCONS_00062789-exon-scaffold_372-1510915933:30420..30519Clytia hemisphaericaexon
TCONS_00062789-exon-scaffold_372-1575043694:30420..30519TCONS_00062789-exon-scaffold_372-1575043694:30420..30519Clytia hemisphaericaexon
TCONS_00062789-exon-scaffold_372-1491911889:31657..31980TCONS_00062789-exon-scaffold_372-1491911889:31657..31980Clytia hemisphaericaexon
TCONS_00062789-exon-scaffold_372-1510915933:31657..31980TCONS_00062789-exon-scaffold_372-1510915933:31657..31980Clytia hemisphaericaexon
TCONS_00062789-exon-scaffold_372-1575043694:31657..31980TCONS_00062789-exon-scaffold_372-1575043694:31657..31980Clytia hemisphaericaexon
TCONS_00062789-exon-scaffold_372-1491911889:32144..32323TCONS_00062789-exon-scaffold_372-1491911889:32144..32323Clytia hemisphaericaexon
TCONS_00062789-exon-scaffold_372-1510915933:32144..32323TCONS_00062789-exon-scaffold_372-1510915933:32144..32323Clytia hemisphaericaexon
TCONS_00062789-exon-scaffold_372-1575043694:32144..32323TCONS_00062789-exon-scaffold_372-1575043694:32144..32323Clytia hemisphaericaexon
TCONS_00062789-exon-scaffold_372-1491911889:32565..32654TCONS_00062789-exon-scaffold_372-1491911889:32565..32654Clytia hemisphaericaexon
TCONS_00062789-exon-scaffold_372-1510915933:32565..32654TCONS_00062789-exon-scaffold_372-1510915933:32565..32654Clytia hemisphaericaexon
TCONS_00062789-exon-scaffold_372-1575043694:32565..32654TCONS_00062789-exon-scaffold_372-1575043694:32565..32654Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062789-proteinTCONS_00062789-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_372supercontigscaffold_372:29493..32654 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0354423	0.0691237	0.0401296	0.0392605	0.0955918	0.037769	0.5468	0.42659	0.418132	0.332951	0.107723	0.495692	0.495003	0.563024	0.422631	0.583134	0.239458	0.354519	0.113028	0.275976	0.342676	0.200575	0.0812749	0.0369453	0.608845	0.54338	0.194394	0.155597	0.118015	0.0801588
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062789 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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