|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062811 ID=TCONS_00062811|Name=TCONS_00062811|organism=Clytia hemisphaerica|type=transcript|length=197bp
GTCGTGTTCTATGTTGGACAGGCGTCAAAGAAATCAAGTGtttgaacaat
cGTATTCACTTCAATCGAAGTTCCAAACTGTGTCAGTTTATTTCCGTGCA
CAACAAAGTCCTGCTGGAGACAAATACGACCACCAATGGGAAGCTTTAGC
TGGATGGTTTCTGGGGCCACGTGCTGAAAACCGAAACATCTTCAATN Run BLAST on NCBI transcript from alignment at scaffold_372:92114..98366- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062811 ID=TCONS_00062811|Name=TCONS_00062811|organism=Clytia hemisphaerica|type=transcript|length=6253bp|location=Sequence derived from alignment at scaffold_372:92114..98366- (Clytia hemisphaerica)
GTCGTGTTCTATGTTGGACAGGCGTCAAAGAAATCAAGTGGTGAAGTACA
AATATCTACGTTTGTTCCCTAAGTTGGATCGTTGGCATTTACACACTGGT
CTATAGTTGACTGCTAGATTATGAGCACCTTTATTTTTGTAAATAGGAGT
AACATGGGCAAGTTTCCAATCCTCGGGTAATTCTCCTTCAGTCAAGGTCT
TGTTCATTATACGGAAAGAGGTTCTGTGATCTCGTCTACAAGCTCTTTTA
GCATTTTTGGGTGGATTTCATCGGGACCGAATGATTTATTGGTATCAAGC
TTCTTAATTTTCTTAGATTATGACGATATTGTCAATAATTTCCTCGGTCC
TGCTTGGGAAATCGGGGACTTCACCTTCTGGTTCATTAGTGTAAAACACT
GCAGAACAGGGATCTGAAAGCGGAAAATTGAAACTTTTACATGAATTTTG
ACTCTGAAAAGCTTCAAAGCTGTTCTTTGGATCAAGAATACCAATTTCTA
GAGGGAATTTCAATTGAATTACACGATTTATGAATGAGCCCTAGCCCTCT
ATATTTCCCCTTTTTTTACGGACATCGAGACAATTATTTACGAAATAAGG
AATTTACTTTGGGAAGATAGATAACTGAGGGTAGGTATGCAAAACTTTAG
GGCAAAAATATCTATTCCAAAGTTTTCCACGCCCTAAAACGTCCGATAAT
GAAAATTTTTAAATAATACTGACAAAATGTTATTATTGTTATTCAAGGAG
AACTTGTACCAAATTACAGCAAAATTGAATGATTTTTAAGGTTTCCAGGT
CAAATTGGGGATGTTTTTGTCATACTTTAAATGAGTCTAATAGGGGGCCA
GGAAAGGGGCTCCCACATTTTTTATATTTAAAATATCTCAAAAATTCTTT
TTGATCCTGCCTAGATATGCCATACGGAGCTAAAGAAAATTTAGTTTGAC
ATGATTTGAAGAAAAAAACGAAAATGACCCTGTATAGCCCACTCCTAAAC
GGTAGTACAATATATTTCAACGCCCTAAAATCTGTCTTTACTGCGTCGAA
GCAAAAGCCATTGTTAAGGTTGGTCCTTTCGTGTCATTTCGAAATGGTAA
GGTTGTAATGCATGATGGTTTTAGTATATATAAAAATGGTCAAAAATTTA
ACTCATTCAGCGTCTTTTGTGTCATTTTATTCAGTCCTTTGTTTCTTGGT
CTTACGTTACTTCTCTGTTCAGTCTCTTGACAATTAATTCTACGCAGTCA
TTTCAGTTCTTTTGTATAACTTTTGTCATATAATTAGTTTATTCACACTT
AGGCAATTATCTAGTATTTTCAATTTTATTCAAGTACGCGTTTTTTCTAT
CTCGATTTTCATGAATCATCAATCAAGCTATGAGAAGCTTTGTGTGTGGT
TGCGTTAACATGGAGTTTCAGACTTAGACAGTTTTGGTCTTAACTTTCAA
AATCAAATCAAATTCAATTCTCAACTTTTGTGCACAGTTTTTTACAGTTT
TTACATACTGGCTACCTGGTATGTTGCTTTCTGCTTTTTGCCTTTGCCTC
TCTGTGTTTTTCTGTTCATTAGCCTATTTGGCTCAGGTGTCTGGAATTAG
ATTATTTTTGATATTTTTAAATCAATTTCTTTAAGCTTAAGTTAGGTTTC
ATTAATTTTGGTATATTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTCACTTAGTTTT
GTCATTATTTTTAATTTTCAGTTTGAACAATCGTATTCACTTCAATCGAA
GTTCCAAACTGTGTCAGTTTATTTCCGTGCACAACAAAGGTAGTGACGTT
TTTGGAGGAGCTCAATGTATGCTAATCCTCCATGGTTATGTTTAGATAAG
TACTAAATTTGTGAAATTCTAATGTTTACTAAATCCCCATGGAAATGTTA
TAAATAAGTGCTAAATTTGTAAAATTCTAATGTGTGCTAAATCCCCATGG
TTTCGTTTGCGTAAGATTAAATTTGACATTTGAAATTTGATATTTGATTT
CAAAATTTTTCTTTCGTACATCTTGGAAAACTCGTTCCATAATTCCTTTA
AATCTCTTTGAAGAAATGGCTCAATCAATTACAAAAAAGTAAGTGCAAAA
TATTTGATTTTAAGAATTTTTGATGTACGACTTTACTTTGGTTCTGAAGT
TTTAACGTGAGTCTACTCTCTCTCTAGACTAGTAAGTAGCTGTCGCTATA
AATGCCCCGCTAACGCATTCATAATTTGAAAAGCCGCATTCCACCAGATT
GTTTTATTGGAACACCATCCAAAAAGCGCACAGCTAGAGATTTCTAACGT
TGAGCGCTTGTCCCGTTCGACTTTGAAACCATTGCGAGCAGCACAATATC
GAAATATTTTTACACAAGAAAAAACAAACACAAAATCAATTATTTTTCTT
CCAGTCTGCTAAATTGCGTGGGTTGCGTGTGTGCGTGAGTCGCTTGGGTG
CGTGGGTCATTTTTTTGCGTGGGTGCGAGCATCAAAATATTTGTTGCGTG
GGTCAAAATTTTTGCGTTGGTCATTTTTTTTTGCGTGGGTCATGTTTTTT
GCGTGGGTCAATATCTTTGGTGACTACTATCGGTATTGACAGTCAAATCG
GGGCAGTGCAGATAATTAACATTTTAATTTTTAGTAAGCTTTTTCTTTAT
AAGAAACAAGCTTATAACTCTTGAATAAAACTTAGTGATCGGTATTGACA
GTCAAATCGGGGCAGTGCAGATAATTAACATTTTAATTTTTAGTAAGCTT
TTTCTTTATAAGAAACAAGCTTATAACTCTTGAATAAAACTTAGTGATCG
GTATTGACAGTTTTCACAATGTATATCAGGAACATAAGCATATTACTTTT
TTTGTAATTGTTTTCTTCATGAGAAACAAACTTATAGCTCTTAGTCTTGA
ATAAAACTTAATTAGTAATTGGTATAAATATAAATATAAACAAGTGATAC
TTTTATGGACCTACCTGGTTATGCATTTAACACATAATTGATATCTACGT
GAGCGTGACCATTAAACAATCATTCAGAACACAAATAGTGACGATCTATT
AAAATAAGTCGTTTGTTTCTTATAGAAAAACGTTTAGAAACCAAAATTTC
ATGTTCTTGAAATATTCTTTCATATTCAAGACTTCGTGAGCAAAAAAAAC
ATATATCTCATCAAAAATTGAGTAATTTGGCTAATAACATTGATGCATGC
TTATTAATAGCGATTCTTATAGATAAACATGCGTTTTTTGAGCTCAAAAA
TTCACTTTTTCACAAAAATCTACTTGAGCCATCTTTAACCTACATGCAAA
AAATCAAAAAACAATGATCCAATATTTCACAAAGTCCAAAAAACCAGTTT
TGTAGCCGTTTTTTTGGCCCAAATTTGCCCAAAAACACATTTTTCGAAAA
TCGGGCATCTTTGTGCAAAAAATCATAAAGAATGAAAGAGCCAATCTCGA
AAAGCTAATACCTAAGTAATTTATAACGTGCTTATAAAAAAATAGCGCAT
TTGGCCAGTTTTTCTATAAAAACACGCCACCCAGTTGGCACACAACGTTG
TTACAACGTTCATCTAACGTTATATGGACGTTGTGAACATTAAATAAACG
TTGAAACGACGTTATGTGCCAGCTGGGCAAGCAACCAAAATTTCATGTCT
AAACACACATATTCTTCAAAAGTAAGCGCCCTCATGAGCAAAAAAAACAC
ATCTATCTCATAAAAAAGACAAGGTGCAATCGATACGAGAGGTAGAAGGT
TGAAATGATATTTATCAAATTCAATATAAGAAAAAGCAAAATGCAGTCAC
ATAATGCAGCTCCACATTGTTTTCAAAACTCTTTTCTTGTGTAGATTGCG
AAAGTGCAAAGTTCAAAACCTGTCGCCTTACATGATTGTGTGTGAAAGAG
ATTACGATATATAATTACGATACCAAGTTTTCATTGCAACGTCATAGTCG
GGCAATTGAGTTTCTGTTTCTCAAGAGTTATATATACCTGTTCATTATAA
AAAAATACTTACAGTTAAAAAGAATAAATCCACATTTCTTCTGCACGAGG
CCCGGAATCTTCGAGCTAGAAAACTTCGAGTTAGCAATTTTCGAGTTAAG
AATTTTCAAGTTAGCTAAATTATGACGTCATAAAAGTGGATATTATGACG
TCACTCGACTCTAGCTAACTCCAATTTCTTTTCCACAAAACCTTTTTTCG
AGTTAGCTAACTCGGAACTTGGATTTTTTTAGAAAAAGTTAACTTGAAAT
TTTTTCATACATTTTTGTATGGTAGTAGGTAAATCCAAAAAATTCAAATG
GTTTCGAACTCGGTTTCGAATGTTTTTATTCATACATAATACGAATGTTT
TTATTCAAAATTCGAGTGTTAGTTTGGAAATTCGAATTTTTAGCTCTACG
GTCGAAGCTCGAAATATGAACAAAAGAAATGAAAAACAAGAAAAATCTCT
TCAAAGGAATTGAAGCTAAGTACCTGAAAAAGATAAACACAAAGGCCACG
CAGTATTGAAAAGTTAAATGCCAAAGCTGAAGAAAAATTATTGCTTTTTT
TAACATCTTACAAAGGAAAACAACAACACTCCTCAACACTCCCTTTTGAA
TTTGTAGAATCATAAAGAAGTAATGTGAGAAATATTCAATATAACTCTCA
AATGTATTGTATGTACATAACTAACATACCTTGAAATAATCTCCCGAATA
ATCTGCAACATATCTGTAGAACTGACAAAACAATTATCTGGAGCCAAAGT
AAGCAAAGAACACCCAGTGTGATAAAAGATCATACACTCATACAAGTCGA
AATTCAAGCATCAAAATGTAGTTTTATGAAGTAAAATTTTGTTGGTGCAC
ACAGAAGATACATCAGGGCACTTAAACTCAATAAATCTAATTTCTCATCT
TTTACAAAATCTCAACTCCACATTAAATAAGAAGAAAAGTGGCCAAGCCA
ACTTCCTTCCGCCTACTTCTTTTTCGAAATTTTTTGGATTTTTCTACTAC
CATACAAAAAAAATCCAAGATAGCTTACTCGAAAACTTGTAAACGAAAAG
TAAATTCCGAGTTAGCTAACTCGAAAAAAAGTTTTGTGAAAAAGAAATTC
GAGTTAGCTAACTTGAAAAATATTTTTTGAAAAATAAAATTCGAGTTACG
CCTCTAATTTAATCTGCAGTAGACGCTAATTCGGATTTCAAGGGGGAAGA
CATTTTTCGTATACAGAGAATTTTGACCCACGCACAACCTTTGACCCATG
CAAAAAATATTTTGACCCACGCACCCACGCAAAACAATGACCTACGAAAA
AATATTGACCCACGCACCTACGCACTCACGCACTCATGCAACCCACGCAA
TTTAGCAGACTCTTTTTTCTTCTTTCTGTTGGCTGATAAAAAAAGAAACG
AGGTATACAGCTTGGCGTATATAATAAAATATCTTTATATCCCTTGTTTA
CTTTATAAGAACTAATTACCGAAAGATATATGGCTGTCAATCAAGAGTTA
TTGATTTGATTCTTATAAATTAGATGCTTATAAGAAAATAAACATGCTCA
TATTGTGCGCCATCCTTTGTTTACTTTGTAAGAACTAATTGCTGAAAAGT
ATATTGCTGTCTATCAAGAGTTATTAATTCTTATAAATTCTTCTTATAAT
TCTTATAAAGTAGATGCTTATAAAAAAAATGAACATGCTGATATTGTGCG
CCGCTGTTCCTGTTTTACTATGTAAGAACTAAAAATCAATACAAGTCACA
ACAAAATAGACAAAACAATCGGCCCACTGAAAATCGGGATAAACATCAAC
GACATGAATATTTTTCTGGCGAACAAGCCCGCTACGTGAAGTAACAAAAG
CAACTGCGGGGCAATTAAGTTTTTACATGTGTTTTTACATAAATTTCGAG
CTTTCTTTTTCCAGTCCTGCTGGAGACAAATACGACCACCAATGGGAAGC
TTTAGCTGGATGGTTTCTGGGGCCACGTGCTGAAAACCGAAACATCTTCA
ATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062811-exon-scaffold_372-1575043694:98327..98366 | TCONS_00062811-exon-scaffold_372-1575043694:98327..98366 | Clytia hemisphaerica | exon |
| TCONS_00062811-exon-scaffold_372-1575043694:96328..96395 | TCONS_00062811-exon-scaffold_372-1575043694:96328..96395 | Clytia hemisphaerica | exon |
| TCONS_00062811-exon-scaffold_372-1575043694:92114..92202 | TCONS_00062811-exon-scaffold_372-1575043694:92114..92202 | Clytia hemisphaerica | exon |
| TCONS_00062811-exon-scaffold_372-1510915933:98327..98366 | TCONS_00062811-exon-scaffold_372-1510915933:98327..98366 | Clytia hemisphaerica | exon |
| TCONS_00062811-exon-scaffold_372-1510915933:96328..96395 | TCONS_00062811-exon-scaffold_372-1510915933:96328..96395 | Clytia hemisphaerica | exon |
| TCONS_00062811-exon-scaffold_372-1510915933:92114..92202 | TCONS_00062811-exon-scaffold_372-1510915933:92114..92202 | Clytia hemisphaerica | exon |
| TCONS_00062811-exon-scaffold_372-1491911889:98327..98366 | TCONS_00062811-exon-scaffold_372-1491911889:98327..98366 | Clytia hemisphaerica | exon |
| TCONS_00062811-exon-scaffold_372-1491911889:96328..96395 | TCONS_00062811-exon-scaffold_372-1491911889:96328..96395 | Clytia hemisphaerica | exon |
| TCONS_00062811-exon-scaffold_372-1491911889:92114..92202 | TCONS_00062811-exon-scaffold_372-1491911889:92114..92202 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_372 | supercontig | scaffold_372:92114..98366 - |
Blast
The following BLAST results are available for this feature:
|
