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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062814 ID=TCONS_00062814|Name=TCONS_00062814|organism=Clytia hemisphaerica|type=transcript|length=1664bp
AcgaaactttttaaaagaaatgacAAATTTTTTCACTCTCTCTTTAGATC
ACaaataatgaaaatacaaaatttacaaaatgtgAAAGATATGTGATGGC
AACATCCATGGCAAAGAAATAAAGGATGGATAGACAAACGGCAAAATATG
GTGCTCTAATTTGGGATGGAAATATATATCATGAAATTGAAGATCAGTCA
GGACAAAATTACACTTTTCATGGTCACAGCGATCTTCTTACTGCCATGTA
TTATCTTATGTGAAAGTCGACACGAAATAAGCCGTCATTGTTATACCAAA
GGAGACCGTGGTGCAAGAGGCGATACTATGATATTATGTTCTGTTTGTTC
TGTACATTATGACCTCGGAAGTAACCATTTCCCAAGATACACAACTGAAA
TTGAATGCAAACCAGACCAGAACAATCAAAAGTTTTGTTTCCAAGGAGAA
GGATATTGTATACAAAGGAGCACCAGCATCTTTATACAGAAGAAGAAAGC
TGATGGAACCATGGAGAATATTTACTATACGATGCATACCGGATGTGAAT
GTGAATGCCGAAAAACATCCTTCTTAACTAACTTGATCTAATAGATTCAA
TTTATGATCtttattacgtaatgttttctatttAAACACCCAAATTTTAG
TCAGTAGTGGCAAATCTTAAACAATTTCTCTAGCTTCTTGTAAAAACGGG
AGTGGTTCCGTAGAAAACATAACGTTGTGAGTATTATACATAAAAATATA
AGCATTTTTGAAATCCTTGCACTTTAAGAGGGCACTCTTTTTTGCTCCCT
TGTTTGATCCATACTCGGGTATAATGGAATATATGTGACtatattttaat
taattttctttccataatttgtgatttttaaaatatttactttGAATTTT
CCAGGCAACATCTTTATTTCTCAACCAATTTGATTTGATATGTTTGTATG
ACTAGTACCTGAATattaatttttcagaattttttgttttatgacgACAT
CACAAATGGCCTGAAAAACAGGCTTTTAGCCAAAATCGcgaaaaaaggca
aaaattaaATCTAAGTAACagccattttcattttcttaccTGAGCAAAAG
TATTCTTATAAGGTacattcttatagaaaaagctTGAATCCTAAATAATA
CACCACAAACAAAGGACtgaaatcattttgaaagattttctgttttACTA
TTGGATAAAGGTGACCCAAATTATTGAACTTTTCCCTATTAATGCTCCCC
CCTAATAATGTCACCGTTAAAAAGATAAACCAGGATaataaactttcttt
ttatGAGAACAGCTGGATTTTCTTGAGGCTCAGCTGTTCAGTCTTTTTGG
TGCTTTGAGCATCAAACTGTTCTCaccattttcttatttttaagtaCATT
AGGCTTGTGCCCAATTTTTGTTATTTGATCCTTAAATTGTCTGAAATTCA
GTATTCCCAGGTttgttcttgaaatgttcttatttttttggcatttttga
acTTCGTCGTTCTTataattttgttcttataactGAAAAGGAATGTGCTT
GCTTTCAAAGAACATACTATAATTTTGTTATCAGCTACAAAATAGATAAT
ATcttaataaaattattttatattgCAGTAAGTATATCAAACTATCAAAC
CACATACTATTTTT Run BLAST on NCBI transcript from alignment at scaffold_372:113321..121571- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062814 ID=TCONS_00062814|Name=TCONS_00062814|organism=Clytia hemisphaerica|type=transcript|length=8251bp|location=Sequence derived from alignment at scaffold_372:113321..121571- (Clytia hemisphaerica)
ACGAAACTTTTTAAAAGAAATGACAAATTTTTTCACTCTCTCTTTAGATC
ACAAATAATGAAAATACAAAATTTACAAAATGTGAAAGATATGTGATGGC
AACATCCATGGCAAAGAAATAAAGGATGGATAGACAAACGGCAAAATATG
GTGCTCTGTAAGAATTATCCCTTCGAAAACCAATCCAACCAAAACCAAAA
GAAGTCCCTTTTTTAACTCAGGTTTCCAGGCCTCAAATAGATGTAAAAAT
TTAGAAATGTTCTTTGAAGAGTTTTAAAATTGGCATTATTGTTTCATGCA
TCCACTATTTCACTTTCATTTACAGAATTTGGGATGGAAATATATATCAT
GAAATTGAAGATCAGTCAGGACAAAATTACACTTTTCATGGTCAGTAAAA
TACTCTCTTGTTTTATAAGAACCAGTAAATTTTTGTTGAGGCTCAGTTGC
TTTAGTATTTTTGGCACTTTGAGCCTCAAATTGTTTATATCCTGTTCTTA
TTTAGGCTAGGATTGACATATTTTAAGCAACAAACCAGAATTTTTCGGCT
TAAGCACCGAAATTGCATGAAATTTAAGAATTATAGGGTCAGCATAGTTC
TTAGTCTATTTGACAATTTTGAGCCTCATTGTTGACAATGACAAAAATGG
AAAATTCAATTGACGGATTCAAAGGACTTATCATTTCAAGGAATCGGGAA
AACAAATTTGTTCGAGTCAAGGAAATTTCGATTTATGCAGTAAGGATTAC
AAGGAATTTTTAACTGAGAGGACCAGAAAGTTTGTTTGAGTGTTTTCTTG
AATAACGTTTTTTTAGAAGTGGACGACTTGATAATTGAAGACAATTTCAA
GAAATTTGAAGAACTTCTGGAACACAATCCACATTTGATCAATTCGTTGC
GAACAAAAAGAAATAAAACTACTTTATTAATGGAGTCCGCATGGTCCAGA
ACATGGGCTGAAACTTTTCCAAAACTGGCTGGTAGGTTATTTGACACCAA
GATGCAGAAATTTTTATCCGACACGCCATAAAGCTCTGAAGATCGGGAAA
ATTTTTAACATCTAGAATATTTAAATTACGGAATTTTGCCAGACCGCGTC
AAGGAATCCGCAGCGAGAGGCATGAACCCCAGCCCTCGTTTTCGGCGCGA
TTGGTGGGTCCAACCGAAATTTTTTCAAGTTTACGCGCAAGGGTAGTTAC
ACCAAACTGGGGATGCGACACATCAAAGGTTGAATATGATTCCTCTCCGA
TGGATATATTGGCCCGCTCCTTTAGAGCTTTATCTTGGTCAATCAACTAT
CTGTGTGATGGAATTTTGATGTACTGATATCACATCCTTTTATTTGAACC
ACAATGTTTTATTACTTTCATTTTTGAAATTGTCCGTTGTTAAATGGGTT
ACTGGGTTAGTTATGCTGAAGACCTGTACTTCGGGAAGTTGTTTTATAGC
CGTCCAAGTACTTTTCTACAAGATCTTGGTAAGACCCAACAGGAATTGAA
CTCTTATTGTCACCGTAGCCAAATACTTCCTTTACACTGTTGCTCTCTCT
TACCATGAATAGTATTTCCCACGGCCTTTTTTTTTAAATACGGTTGACAC
TGTGTTATTCGACGTTCTACTATTCGATACGCTTCAATAATATTAAAAGT
CAACGTCAACAAGAAACTCTCATAAACGACATTCTACTATTCGAAGCGCT
CCCTTATTCGACAAAAAGTCTTTTCCCCTGGAAAATCGAATTAGAGAGCA
TCAACTATACGACATTTTTAGACAATCAGTCGCACACAGGACCTATGATT
TTCTGCACCGTAACCAAATGTTCTAACTTTCGCTCTAACTTTGAATCACA
GCTGTTAATATTCTTCTTTACCAGAATATAATCAAGATATATCAGTTGTT
GGTATCTATGATCGAAATATAATCCATCGCATTGTAATACATGGTGCAGA
TGATGAAGCTCTTACGATGTTAACAACATTATCAAAACACCAAAACATCA
AAGATCCATCCATCATTAATGCTGTCGACTCAGTACGCCAAGACACGCCC
CTGCACATGGCGGCATATTTCAATAAACTAAAAACTTTAGAGTATTTGGT
TGATTTTGATGCAGATTTGACTTTACGTAACAATAAAGGTGAAAAACCTG
GTGAACATTTTAAATGCAGCGAGGACACAAAAAAATTGATAAAATCTCTT
GGGAAATGACACAGCAGGACTTGAACACAGCGAACGATAAACTTGAGAAG
TATCTCAGAATCATTACGAGCCCTGTTTTCGTGTTAACTGTACTTTTACG
CATCCAATTTAACTTTTTAATACTTTTTAACTTTTTTAGTTTTAAGGCTA
AAAACGTTCTTAAAATGTTCTTATCATCATCATTTGGGAGTATTTTTGTG
CAATTTCTGAAGAAATTTGGTGTTTTTAGAGTCCTGTAGAAATGGCAAAG
TCTTGTTCTTCATATTTTCTTTATCAATGCCTTTTATCTAAGAGCTTTCG
AAACGGTCCTATTTAGCACATACCGTTGTTCCGCCTGAGATTCCACTGTC
TCTTTCCTGCAGAACAAGACAAGGTCAGGAGCCGGAGCCCGAATTGTAAA
ACGAGTCTCTAAAAAGTCAATGCCTTTTATCTAAGAGCTTTCGAAACGGT
CCTAATTTAGCACATACCGTTGTTCCGCCTGAGATTCCACTGTCTCTTTC
CTGCAGAACAAGACAAGGTCAGGAGCCGGAGCCCGATTTGGAAAACGAGT
CTCTAAAAAGTGGCCAGTCAAAACATAATACAATATATTTCCCGTACCTT
TGAGATCAACCCTCTTATATTGTTTTTCGAGAACAATATGTCCCAAAGCG
ATTCTGTTAGAATCATTATCTTTTGCGCATAAACAACATTTTTTACGCAT
AAATTATGTCATTGATGCAACGTTGATGCTCCATTTCAAACGTCTTCAAC
TAGCAAATGGTATTGAATTGCAGAAAATGTCCCACGTGATTCAAAATGAA
AATTGAAAATTTTTACCATTTTGATAAGTAACAGTAATATCAATTATTAC
GGTACCGAATGAGAGAAAATTTAAAAGTCATGGCTCAAAAAAACATTCCC
TCGTATAAAAAAAGATTCCTCCAAAGTTAAAGATTCGAAAAAAAAAGATT
CCCCAAAAAATTAAAGATTCCCTCAAAGTTAAAGATTCGAACAATACACG
CTTTTTTTTATAAGAATGGTGTAAATCCATTTCATTATGGATATTCTTAA
CTTTTTTTGGGAAAATCATCCTAAAATATTCTTACATCAAATTCTTAGGT
TAGGATCCTAATTTATACTAGATTTAGTACATACGTCTCAAGCATAAAAT
GGCACTTTTGTAAAAGGAGTGAGCCTAACTTGGGGATAATTGATGATTTA
TAATTGAAAATGGCATTCTTAGCAAAATTCCATGATGGTGATATTCTTAG
CATATTCTTAGTTTTTTGGCCATTTTTATCATGGACATTCTTATAAAGTG
TATTCTTATAAAAAAAGCGTGTAATAAAGATTCCCTCAAAAAAAATAAAG
TTCCCCTCAAAAAAGAAAGAATCCCCAAATAAAAGAAAGTAAGATTTTTG
CCCTTCTCGGCCACCGTAGATATTCATACTTGAATATAACACTTTAGTTT
TCGAGGTTGTTCGTATTCTCTTCTTAACTACAAAGGGCTTCAAAAAGGCT
AGAGAATATATTGTTAACAATGATANTTCGAGGTTGTTCGTTTTCTCTTC
TTAACTACAAAGGGCTTCAAAAAGGCTAGAGAATATATTGTTAGCTTACC
TCCAAATTTTAATGTTTAGCTATTTCTCTTTATTTTCTTTTTTTGCATAA
TTTAGTGCGATACTTTTTTAATTAATTTTTTTCAATCTAGGGTTGCTTGA
TTACGTGGAAATCAAGTAAGTCTTTGAAAAATATTAAAAACTCAATTTTG
AAGAAATTGGCGCCCCTTCGAGAGTGTAATTAACGATTAATTGCTCTCTA
CAGGATGCAATTAACGATTAATTGCTCTCTACACGATGCAATTAACGATT
AATTGCTCTCTTTAAAGGTGCCAAATAAGAAAATAGGTTCTAGAGTTGAC
AAAAAAAATTGCCCTTCGAATCTCCTGCAGTTTTTGAGTGAATTGATACT
TATCAAGGGACATTTTACTAACGGTTTTTTTTTTAAGTCTGAAAATCAAA
TATCTGAGGCTACCAACGGATTCAGCGTGAAAAGTAGATAAAGAAAATGG
GGTTATTTGTTAAGTTTCGACCACCTGGTGCCGAGAAATGGCATTTTTAA
GGCGAAAAATCTATGTTTTTGGCGTTTTCCGATGACGTCAGCATTTTCCT
AGAGGGATTTTCAGAAAAAATCATTCTCACGGCTGGATAGCCCTGAATTA
GAAGTATCCAAAAATGGTATGGTTTGTCAGTTTTCGATGTCTAGATCTCA
AGATATTTTGGTTTAAATAAAATTATCGATATTTTTTGCTGATTCAGCAG
TTTTTCAGCATATTTACCCACCTTAAAAATGAAATATCTCAAGGTCGGAA
CATCGAAAGTTAACAAACCATACCATTTTCGGATACTACTAATTCAGGGT
TATCCAGCTGTGAGAATGACTTTTTCTGAAAATGCTCCCAGAAAAATGCT
AAGATAAGCTCATGATAAGTTCTATCGATTAACTAAAAATCGATTCACTT
TTCAATTCTATTCAATTCTACTATTAGGAGCATAATATCAATTCTGGATC
TCGGACGCTTGACTAATGAGCACTGCTCTTGTTTTGAATACTGAAAACCT
CTGGATAAATCGCTGTGTTTTAAAGATTCTTTTATTTGAAATTTCTATTG
ATAAACATCTTTTGTGAAAGTTGTCTATTATGTTTAAATCTATTAATAAG
AAATTCCCGGTGAGGGTCACTAGTGCAATGCCGGACAAAAGGTTGTAGAC
AAATGAAATTTCAGTGAAAAATGATGAGAAATAGAAAAAAATGACTCTTC
AATGTGTCTGAAAGGGGATGGAAGTTAAGAAAAACACTTTTGAAGTCGTT
GCATTGCTTTTGAATTGCTTTTGAGGGAACCACAAGCAAAAAANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGCAAAAAATCAGCGTTTTGATAC
TGGTGTAAGCCAGTTAATCAAGCCCTTGTGGTTTGCCCTTGCGGTTAGAC
TGCAGTGGGTGACTTTGAAAGACTTTCGATAGGTTTGGATAGGTTTGGAA
AGCACCCAGAGCCTCTTGGGAACTTGTTTTTGATCGATACTGAAGTATTT
TGCAAATATTGCAGAAGTCTACAAACCTTTTGTCCAGCATTGTGGCCGCC
TATAGCAGTGCCTATAGACCAAGAATAAGGCCTAAAAGCCTGGAGCTGTC
TACTCTTGTCTCCCGAATAGATGTCCCCCGCTAATTGTTAAAAGAAAAAA
ATCCATCCCCCGCTCTTATTAAGACCCCCCCCCCCGCTAATTAAATTAGA
ATGATTCAATATTTCATTACAGTGTAGACCTTAAACTTGTCAAGATTTGC
TTATTCGGACCCCCCCCCCGTCTATTCGGGAGACAAGAGTATTGTGTAGA
CTAGATTTCAACAAAAGGGAAAGAATTTTTTAATGTACCACAAGTTCAAC
ATGTACGGTTAAAATAAAAGAAAATAGCTATTGTGAGTCTTTCTAACTGT
TCATATGTCTATGGTTAACTTCACTGCTTTAAAGCAAGAAGTGTGATTTT
GACAAAAATTTATATAACTTTTTAATTTGTAGAAAGAAATCATCTAATCA
AATTTACTTGAATCCTTCCGGGTTTAGCCTTTGGTTTTATTCAGCAACGA
AATGGCTTGTTTTAATATGGTTAGTTCCATTATTATTCCTTTTCTTGATT
TAAAGGTTTTGCTTTTGAACAAGAGTGATATCGGTTGCATACTCATCAAA
TTAAACTCGCAAGCTTTTTCACATTGGATTGTTACTGAATTTGAGTGATC
GTGATTGAAGACAAAGAAATGCGTTTAATCGTGATTAGACTTACCGCTTG
GACCCTTTTAAATTTTTTTTAACTTGTTTTAAATATTTTGGGCAGTTTTC
AGCCTCATTTTCTTATAAAATTGTTCTTATAAAGTAAAAAAACGTATACT
TGGAGTCACTTCTAAACTTCCAAGAGCTTTTGTCTAGAATTCATTATTCC
TCTTTTTTAGGTCACAGCGATCTTCTTACTGCCATGTATTATCTTATGTG
AAAGTCGACACGAAATAAGCCGTCATTGTTATACCAAAGGAGACCGTGGT
GCAAGAGGCGATACTATGATATTATGTTCTGTTTGTTCTGTACATTATGA
CCTCGGAAGTAACCAGTAAGATTTTTGTAAAAACATCCAAAATAAAGTCT
TCAGATGTTCTTAATGTTCTCAACATGTTCTTATTTTTTGTCATTTTGGC
CATTTTCTTAAGAAATATGGTGTTGAGTCCACAATGCTTTAGAAAATGTT
TTTAACTTTTTTGCTATCGAAGCCTTATGTTCTTATATAGTTTGTTCTTA
TAAAAGAAAAATGTGTAATAGACCTGTCGATTAAGATTGAGTACCGTTGT
TTTGCATAAGATGTCACTTCCTGCACTAAGAAGCCAGTGTCACTTTCCTA
CCGGAAAAAGAATTTGGGTAGTTGAAAAATGAGCTTCGGAAAGCTAGGTA
GTTTCTTTAATAAACTCAAGATACCTTACATTCATGTCGGTTATCCCGGA
AAAATCGCGGAAAAATGCTGGAAAAGTTAGGAGAATTTTAGTTTGGGAAG
TGGAATCTTATGCCATACGACGGTGTACTTCCTCAATTTAACATTGAACC
TTTTTTACTCCCAGTTTCCCAAGATACACAACTGAAATTGAATGCAAACC
AGACCAGAACAATCAAAAGTTTTGTTTCCAAGGAGAAGGATATTGTATAC
AAAGGAGCACCAGCATCTTTATACAGAAGAAGAAAGCTGATGGAACCATG
GAGAATATTTACTATACGATGCATACCGGATGTGAATGTGAATGCCGAAA
AACATCCTTCTTAACTAACTTGATCTAATAGATTCAATTTATGATCTTTA
TTACGTAATGTTTTCTATTTAAACACCCAAATTTTAGTCAGTAGTGGCAA
ATCTTAAACAATTTCTCTAGCTTCTTGTAAAAACGGGAGTGGTTCCGTAG
AAAACATAACGTTGTGAGTATTATACATAAAAATATAAGCATTTTTGAAA
TCCTTGCACTTTAAGAGGGCACTCTTTTTTGCTCCCTTGTTTGATCCATA
CTCGGGTATAATGGAATATATGTGACTATATTTTAATTAATTTTCTTTCC
ATAATTTGTGATTTTTAAAATATTTACTTTGAATTTTCCAGGCAACATCT
TTATTTCTCAACCAATTTGATTTGATATGTTTGTATGACTAGTACCTGAA
TATTAATTTTTCAGAATTTTTTGTTTTATGACGACATCACAAATGGCCTG
AAAAACAGGCTTTTAGCCAAAATCGCGAAAAAAGGCAAAAATTAAATCTA
AGTAACAGCCATTTTCATTTTCTTACCTGAGCAAAAGTATTCTTATAAGG
TACATTCTTATAGAAAAAGCTTGAATCCTAAATAATACACCACAAACAAA
GGACTGAAATCATTTTGAAAGATTTTCTGTTTTACTATTGGATAAAGGTG
ACCCAAATTATTGAACTTTTCCCTATTAATGCTCCCCCCTAATAATGTCA
CCGTTAAAAAGATAAACCAGGATAATAAACTTTCTTTTTATGAGAACAGC
TGGATTTTCTTGAGGCTCAGCTGTTCAGTCTTTTTGGTGCTTTGAGCATC
AAACTGTTCTCACCATTTTCTTATTTTTAAGTACATTAGGCTTGTGCCCA
ATTTTTGTTATTTGATCCTTAAATTGTCTGAAATTCAGTATTCCCAGGTT
TGTTCTTGAAATGTTCTTATTTTTTTGGCATTTTTGAACTTCGTCGTTCT
TATAATTTTGTTCTTATAACTGAAAAGGAATGTGCTTGCTTTCAAAGAAC
ATACTATAATTTTGTTATCAGCTACAAAATAGATAATATCTTAATAAAAT
TATTTTATATTGCAGTAAGTATATCAAACTATCAAACCACATACTATTTT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062814-exon-scaffold_372-1575043694:121415..121571 | TCONS_00062814-exon-scaffold_372-1575043694:121415..121571 | Clytia hemisphaerica | exon |
| TCONS_00062814-exon-scaffold_372-1575043694:121182..121246 | TCONS_00062814-exon-scaffold_372-1575043694:121182..121246 | Clytia hemisphaerica | exon |
| TCONS_00062814-exon-scaffold_372-1575043694:115107..115261 | TCONS_00062814-exon-scaffold_372-1575043694:115107..115261 | Clytia hemisphaerica | exon |
| TCONS_00062814-exon-scaffold_372-1575043694:113321..114607 | TCONS_00062814-exon-scaffold_372-1575043694:113321..114607 | Clytia hemisphaerica | exon |
| TCONS_00062814-exon-scaffold_372-1510915933:121415..121571 | TCONS_00062814-exon-scaffold_372-1510915933:121415..121571 | Clytia hemisphaerica | exon |
| TCONS_00062814-exon-scaffold_372-1510915933:121182..121246 | TCONS_00062814-exon-scaffold_372-1510915933:121182..121246 | Clytia hemisphaerica | exon |
| TCONS_00062814-exon-scaffold_372-1510915933:115107..115261 | TCONS_00062814-exon-scaffold_372-1510915933:115107..115261 | Clytia hemisphaerica | exon |
| TCONS_00062814-exon-scaffold_372-1510915933:113321..114607 | TCONS_00062814-exon-scaffold_372-1510915933:113321..114607 | Clytia hemisphaerica | exon |
| TCONS_00062814-exon-scaffold_372-1491911889:121415..121571 | TCONS_00062814-exon-scaffold_372-1491911889:121415..121571 | Clytia hemisphaerica | exon |
| TCONS_00062814-exon-scaffold_372-1491911889:121182..121246 | TCONS_00062814-exon-scaffold_372-1491911889:121182..121246 | Clytia hemisphaerica | exon |
| TCONS_00062814-exon-scaffold_372-1491911889:115107..115261 | TCONS_00062814-exon-scaffold_372-1491911889:115107..115261 | Clytia hemisphaerica | exon |
| TCONS_00062814-exon-scaffold_372-1491911889:113321..114607 | TCONS_00062814-exon-scaffold_372-1491911889:113321..114607 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_372 | supercontig | scaffold_372:113321..121571 - |
Blast
The following BLAST results are available for this feature:
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