TCONS_00062881 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062881
Unique NameTCONS_00062881
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062881 ID=TCONS_00062881|Name=TCONS_00062881|organism=Clytia hemisphaerica|type=transcript|length=1322bp
AATGGCTATCACTACTGTATTGAGCTGAAGGCAAGTTCCTATGTAGACTA
GAGGACAACCAAGTCAGACATTGTTTACGAGTAATGGATTTTTAAGCAGT
TTAAGCAAGAATATGACGGTTGAAGTTGTGATCAGCTTTTGTGATGCTAC
AAATACAAGAACTAGTGTACCAAAATGTGAAATAGgttAAAAATGTCATA
AGTCGCAAtgttatgaatgaaaaaaattggtgTGACAGTGTACATTGGAC
ATTGccATCCTTGTCGGACTTGATTTCTTCACGTACTTGGCAGCGAATAA
AGCAGTTGTCCAAGACATTTTCCGGATGATGATTGGAAGTACACTTCGTG
CATGTTTTGAGGAAATTAAAGAACCTTTCCTCATCTTCGGCATTCGATGA
GGGCATTGGAATTATGCGGAATTGCTCTGGAGCATGGCAAACAAGTGCGT
GAAAATACTGGCCGAACAATTTTCGCTTCGTCAACTTCTCAGTCGTTTCG
AAAGCCACGATCATTTTCATGGCATGAACAAATGTCACGTTGTACAGCCG
CAAAATCAATTCAGCGGACCTCTCGTTCGAGTAGAGGATTTCCTGTATCT
CGCATAGAGAAATCAGAATCTGGACTATCTTGTCATCAATTCGTCCATCA
ACGGCCGTCGTTAATTGGAGCAATGCATTTCGGTAATCTTTCCCTCTTTT
GACTTGCCTTGAAGAAAAAGCAGCTTTCAAAGTTCTCTCAAATACGCCCC
GTTCTTTTTTCGGAAGGTGTCTTGGGATTTCCTCGAAAAGATTATTGATA
TGGTGACCTATTGCGTGCAATGGTTCGACTGGAAGCACCTCGTAATCGCA
CATTCCAACTTCAGCAAAGCGATATTTGCCAGTATTGTGCAACAGAGCTG
GCATTCTGTGTGTTCCCTTCATTTCGTTATCGATCTCTTTCCTCAAATCT
TCAACACGACTTTCGACAGGAACAACAATATCGCGTAAATGGAGTTCAAG
TTGGGCTTCGTGACTTTTCAGGCAGGAACTGTAGTGCAGAGCACCTTCGC
TTTGAAGTTTCCGACCGACCTCAGTCATGTTTAACTTCTCACACTTGTCA
TCGAGCGACATCTTGGTGGCATTGAATGCGTATTGAAGGTCGTGGCAGCG
GAAAGAATTGCACTCGCAACCCCAACAAAAGTAATTTCCTCCTTTTTTGT
GACCACTCTCCAACTGACAGGCTGGAGCATCTCCTGAATTGTAGCAAAAT
ATTCAATaattttgttataaatttttaCATTGATAGTTAATAGTTGAATA
TAACAATTTTTGTGTCGATTTA
Run BLAST on NCBI

transcript from alignment at scaffold_373:206892..213301+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062881 ID=TCONS_00062881|Name=TCONS_00062881|organism=Clytia hemisphaerica|type=transcript|length=6410bp|location=Sequence derived from alignment at scaffold_373:206892..213301+ (Clytia hemisphaerica)
AATGGCTATCACTACTGTATTGAGCTGAAGGCAAGTTCCTATGTAGACTA
GAGGTATGTCTGCTCCCAGGAGAGCTGCATGTTCCTCAATCCATACTCAA
TCCCATCAATGGATATACATAATAGATTTAACATGGATGACTAATCAAAC
CGATTAACCAATCGATCGATTCGGATTATTAGTACGTAATTGATAACTGT
TACCAATGGTAATGGATGACCAATCGATTGATCTCGAATAATCGATAGGT
TATCGCAGTATCGTACCTATTTATtctaaaatcttgagtatctatctttg
attgtttttttttcattcctaAGGCAATATAGCCTGCCTTGGAATTCTGA
TTATCGATTGTCTATCGATTATTAAAATTAATCGATATACAATCAATTGG
TCAACATGAATTGGAAAAAGTTACAGATTGTATCGATTGGGAGAGTCTGG
TTTAACACACACTCTCCCATGTAATACACTGATAACTCTTTCCATTTGAT
AATCATGTTTTTTTAAAGGAGGCTCGATTGCTTATCGATTGATCGAATGA
TCATAAATTGGCTCTAAcaagcagttagtcacactagcgtcccgccaaaa
tgcatatcaaagattaatgctgcgaaagcgctatatcatttacttgactc
tcaagcaaaaaaatgcgccgcaaaacttttaaagggattcatgaaaaaat
aacccggcgctttttaatgaaattaatattttcaaaaactttgagaaatt
gcctaaaatttgagccatagatgaaaaaaattgagccaagccaaccttga
aaactaatttgacgatcaacttcccaagaaaaagatctacgggggaggcg
gaacccacctggatccgcgcaccgccgggtAGGCTGTTTCTCGGAAATTT
TTGCCGGACcacaaacaatgacccatttacatgggcggaattatttttac
tttagcgtataaacaaggccttaaaaatcgaagcgctgtctcgggaattg
aatgacaaaatttggttggttaatatttggctgctgcacgttcgcaatct
gtcattttgtctcattttaagttttcaagttttaattgattgtcttggga
tcttgaacttgattcaggtaactctctcATCCTTGTTATtaaaatacatc
ctgtagatgactgatgttgttttttctgaaagcttgatttcctagtgtga
ctaactgacaagataaaaaaaacaatgatcaatCAATATACAGTACTCAA
GATTTTAGTCTCAATCAACTATCAATTATTGGGATTGGTTATCAACTAAA
TTGAATAGGACCAGACGTTACTActcattgttaaccggttactttttcga
agcgggctttttgcgcaatgcaatttgttcttttcgcatgacgacgggcc
ttcactgtccagagttgcccgtcgttaggaaaattcattgtgacatcact
ttttcaaaggaaaattaacaatgcgttgacatcatttctctcatttttta
tttctgacgtcagaaattataacaattttttatctctttttgcttgtttt
tcgctatttttcctggatacagcgctaaaaatcaattgaagctgaaggaa
acggttaacaaatagaATAATGACCGGTTTCTTTTCGGGCTGTATTGAAA
ATATTGTCCTCGGTCAACACAACAACCTTGCacagggggggtcggtagta
aaatctctaTACGGtaaaatagtttacggtctggacaTCCAGGCTAGGTT
TAAGCTAGAAAGTCTCAGCATAACTTCTTCACATTCTAGACAGTTCTAGA
GACATTTTCCTAATCAGGGTGTCATgcttgaataattaaaaactccattC
CAACTCCAGCACAGACTGGCAcagattatattttttattgttgttgtttc
ctTTGCATTGCATCCATTGAAATGGGGAGTTATCATGATTTACGCTGGAG
ttatttttaatattcaacACAGCACTGTGATTAGGAAAATATCTTTTCTA
GCCAGTTAGTATAATTTACTTATAGgatgaaaacaaattttcattgaaag
tttcaaaccaagaaagtgaaatttatgcaaaattaaaatttgtgaTTTCT
GCCTATACTTTGTCTGAAATTAAGTGGTCCCCCGCATGTTACTCTGGTGT
AGAAAGCTATTAATCAGGCTCATTTTTATAGCATGGGCTTACAATGGAAA
TTCCATGATATAAGCCCATTCATAGTATTATTTCTGAAATTAAGTGGTCC
CCAGCATGTTTCTCAGGTGTAGAAAGCTAATTAATCAGGCTCATTTTTAT
AGCATGGGCTTATAATGgaaatcccatgatataagcccattatagtatta
tttctgaaattaagTGGTCCCCAGCGTGTTTCTCAGGTGTAGAAAGCTAA
TTAACCAGGCTCATTTTTATAACATGGGCTTATAATGGATatcccatgat
ataagcccattatagtattatttctgaaattaagTGGTCAGTCCtattgt
aaattttcaaaaaaatactaaTCAATGACAAGTTTTATAAGTGAAGTATA
TATCTGGAAGTCTATCTTCtgcaaaaattttaattctgtaatgaaaataa
tttttagaaagtGATAAAATAAATATAGAAATTTTTGTGAATGTGTCAGT
AATATAAATACTAATAATAACAATCATACAAATGTTACACACTGAACTTA
TTTGAATAATATTTACAATTTAAATGAAGAGTCAATGTagtaaaaattct
tttaaaaattatatcttaATTGATGTTACGCTATTCATTTTGCTTATGGA
ATGAGTGTAAACCTGGACAGGATTCCATAACATTTTTATAATCTCACAAA
TTTACTCTCGTTAATCCTAAAAAAGCATTCCtgctttcaaaagtttaaac
TTAGTTATTTTAACTTCTAATTTGTGTCTGGTGATCTAAGttaaaataat
atcaaattttgatttcaagcacTTGATGATCGACATTGCATTTTTCTCCC
TCACATATTCTTCTTTATCATCTTCGGTATAACGCCATGTGTACTCGTTG
TCTGTTTTTAATGCCTTCTTTTCTAACAATTTTAGAGCCTCAGTAGCCTT
TTCCCACCTTACAACAAGTTTCACTCCTATCTTAGTAAGGATTTGATCAA
GTTCGCCTCCTGGTCTGTTCTTCATTTTCTCATAGCTATTAGTCAAGCTT
TCTTCTCCTAGCACCTGATTTAGCAGCTCTTTGGTAGAGAAGGATTTTTT
ACGTAAGAGTGCATGTTTCTCTTCACCTAAGGaagaataaaatgattttt
ttttcattttacagGACAACCAAGTCAGACATTGTTTACGAGTAATGGAT
TTTTAAGCAGTTTAAGCAAGAATATGACGGTAAGCAAGTTTATCTTTATA
TTAACACTTACTTTGGGTCTCATCACTTGGGCAGCGAATTGGGgtttttt
gattgattgattgatctaAATGACACAGTACAATGATTATGCATAGTGTT
ATGGGTTTTTTATTAATTCTAGATAGCAtattaattgaaaataaatgctt
GAATCATTGTTACACTAAGTTATGCGGATTTAGTTGAATAAATGAATTGC
GTGTTGCATTGAAACTTACTCGATAAATTTTGATTAGGTCCTCGGGTTAA
AACAACTTGACTTGCTGATAAACCTGAAAAaatggttttaaaattttttt
aacactgTGTCATCTAATTCCTCTCAGGTTGAAGTTGTGATCAGCTTTTG
TGATGCTACAAATACAAGAACTAGTGTACCAAAATGTGAAATAGGTAAAA
CAAATATTCTTAGTGTTCTACATCAAGCTAGAGAAATCTGGTGAAACTTA
CTAGAGTTATCATGGCTTGGTCCTGGTGTTGAGTGGTCTTGTATCATTGA
TACGTCTGAAACTGAAGATTTTTATTGCTGGtaaaatttacaagaaaaat
tcattctgttaaatttctttttttaaggttAAAAATGTCATAAGTCGCAA
tgttatgaatgaaaaaaattggtgTGACAGTGTACATTGGACATTGGTAA
GAAATAATTTTACTGctagaaaatataaaacttgTGAAACTTACATGAAC
GTTCATGACTTGGTCCAGGGGTTGCCTGGGTATGATACATGGGAACATCT
GAAATTTGAAGATCTATGGGTGTGTCTAAAACAAAGATACAGATTGTTTA
ATACATTGCTGAAGAGCCAGCAATCGGTAGCATGCAGAGAAATATGTTTA
ACCCTTAAAATCTAATTTATAATGGAGAATTTACCATCAACTTTAGCAGC
TTCAGCCACATTTTTTCCAGTATAGTTTGACTTGATATACTTGGGAAAtg
ctaaaaaaaaaatattgcacaATATAAAATCAAGGAAACTgttaaatctt
cattttaagaTTGATGATGCTAAAGGATTGGTACTGTCTATACCAAAGTA
ATTATTTGCCTCGGTCtggtatttttgaaacaaaattaacTCACAAGATT
TTTGCTGGCCCATAGAGTTGCATGGAGTTGAAGATGCAAACGTTGTCTTG
GTTTTACCTAaacagaaatatttttaaaattcttgAATCCTGTCCAGGTT
TACACTGGAGAAGATAAAGTATTTGACCtagttgaatttttttaatctaa
AGTGCATTTATAAAAGACCACATTATGTGGCGCTCTGTACCTGATTCAGG
CGGGCTCTTCAGCTGCATGTTTGCGATCATAGTTGAGGGGGTAACGTTGA
GATCTACCTTCTTTTGCTTTGTCGAATTTGCTATAAAGAAATTGGAAGTC
TTTCTAACTTTGAAAATTCTGAGAGTAAAGTGCTGATAGGTTTCTATTAA
AATTATCATTCAATTGAAGCAGGCATTTGGAATGTTAGTAAAACAAAGTA
TAAACTTCTGCTGGAACCTTAGTCGAAGAAACTATATAATTTCTTACCTT
TTTCAGcttgttttttgaaatgatttagGGTTACAAGGAAGTTTGTCTTC
TTTCCGTCATCATCAATGATCTCATAGGCAGGAATTTGAGAAGGAGAGCT
TTTGAGGAGATCTGACCACACTTCTTTAACACGGACCAACTCCTGCTTAA
TTGTTGTATCTCGAAAATGACTGATAGGGAGATTGAGCTTTTTCAGGTCG
CTAAACTTGATGCCATCGGTCATTTCTGTCCAAATGCCTTTGACAACTAA
AAAATCAGCTATCCTCTCTAAATGAGCTTGCCATATCCTAGGGAACTTTG
TGATGAATCGGAAAGGGATTATAGTTTCGGTCTTGGGTGGAAGCTTCTTG
CCAGACTTAGAGATTGATGactctcttttttttcttttacagccATCCTT
GTCGGACTTGATTTCTTCACGTACTTGGCAGCGAATAAAGCAGTTGTCCA
AGACATTTTCCGGATGATGATTGGAAGTACACTTCGTGCATGTTTTGAGG
AAATTAAAGAACCTTTCCTCATCTTCGGCATTCGATGAGGGCATTGGAAT
TATGCGGAATTGCTCTGGAGCATGGCAAACAAGTGCGTGAAAATACTGGC
CGAACAATTTTCGCTTCGTCAACTTCTCAGTCGTTTCGAAAGCCACGATC
ATTTTCATGGCATGAACAAATGTCACGTTGTACAGCCGCAAAATCAATTC
AGCGGACCTCTCGTTCGAGTAGAGGATTTCCTGTATCTCGCATAGAGAAA
TCAGAATCTGGACTATCTTGTCATCAATTCGTCCATCAACGGCCGTCGTT
AATTGGAGCAATGCATTTCGGTAATCTTTCCCTCTTTTGACTTGCCTTGA
AGAAAAAGCAGCTTTCAAAGTTCTCTCAAATACGCCCCGTTCTTTTTTCG
GAAGGTGTCTTGGGATTTCCTCGAAAAGATTATTGATATGGTGACCTATT
GCGTGCAATGGTTCGACTGGAAGCACCTCGTAATCGCACATTCCAACTTC
AGCAAAGCGATATTTGCCAGTATTGTGCAACAGAGCTGGCATTCTGTGTG
TTCCCTTCATTTCGTTATCGATCTCTTTCCTCAAATCTTCAACACGACTT
TCGACAGGAACAACAATATCGCGTAAATGGAGTTCAAGTTGGGCTTCGTG
ACTTTTCAGGCAGGAACTGTAGTGCAGAGCACCTTCGCTTTGAAGTTTCC
GACCGACCTCAGTCATGTTTAACTTCTCACACTTGTCATCGAGCGACATC
TTGGTGGCATTGAATGCGTATTGAAGGTCGTGGCAGCGGAAAGAATTGCA
CTCGCAACCCCAACAAAAGTAATTTCCTCCTTTTTTGTGACCACTCTCCA
ACTGACAGGCTGGAGCATCTCCTGAATTGTAGCAAAATATTCAATaattt
tgttataaatttttaCATTGATAGTTAATAGTTGAATATAACAATTTTTG
TGTCGATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039388XLOC_039388Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062881-exon-scaffold_373-1491911889:206892..206944TCONS_00062881-exon-scaffold_373-1491911889:206892..206944Clytia hemisphaericaexon
TCONS_00062881-exon-scaffold_373-1510915933:206892..206944TCONS_00062881-exon-scaffold_373-1510915933:206892..206944Clytia hemisphaericaexon
TCONS_00062881-exon-scaffold_373-1575043694:206892..206944TCONS_00062881-exon-scaffold_373-1575043694:206892..206944Clytia hemisphaericaexon
TCONS_00062881-exon-scaffold_373-1491911889:210206..210270TCONS_00062881-exon-scaffold_373-1491911889:210206..210270Clytia hemisphaericaexon
TCONS_00062881-exon-scaffold_373-1510915933:210206..210270TCONS_00062881-exon-scaffold_373-1510915933:210206..210270Clytia hemisphaericaexon
TCONS_00062881-exon-scaffold_373-1575043694:210206..210270TCONS_00062881-exon-scaffold_373-1575043694:210206..210270Clytia hemisphaericaexon
TCONS_00062881-exon-scaffold_373-1491911889:210619..210685TCONS_00062881-exon-scaffold_373-1491911889:210619..210685Clytia hemisphaericaexon
TCONS_00062881-exon-scaffold_373-1510915933:210619..210685TCONS_00062881-exon-scaffold_373-1510915933:210619..210685Clytia hemisphaericaexon
TCONS_00062881-exon-scaffold_373-1575043694:210619..210685TCONS_00062881-exon-scaffold_373-1575043694:210619..210685Clytia hemisphaericaexon
TCONS_00062881-exon-scaffold_373-1491911889:210869..210937TCONS_00062881-exon-scaffold_373-1491911889:210869..210937Clytia hemisphaericaexon
TCONS_00062881-exon-scaffold_373-1510915933:210869..210937TCONS_00062881-exon-scaffold_373-1510915933:210869..210937Clytia hemisphaericaexon
TCONS_00062881-exon-scaffold_373-1575043694:210869..210937TCONS_00062881-exon-scaffold_373-1575043694:210869..210937Clytia hemisphaericaexon
TCONS_00062881-exon-scaffold_373-1491911889:212234..213301TCONS_00062881-exon-scaffold_373-1491911889:212234..213301Clytia hemisphaericaexon
TCONS_00062881-exon-scaffold_373-1510915933:212234..213301TCONS_00062881-exon-scaffold_373-1510915933:212234..213301Clytia hemisphaericaexon
TCONS_00062881-exon-scaffold_373-1575043694:212234..213301TCONS_00062881-exon-scaffold_373-1575043694:212234..213301Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_373supercontigscaffold_373:206892..213301 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.44876	1.43118	0.195758	0.230621	2.83987	0	2.00078e-05	1.16117	4.38032	5.60253	1.05784	2.32463	6.09404	1.91523	9.05266	6.263	8.14265	6.88752	3.46837	7.1337	3.67927	0.839354	1.2758	3.54124	0.00416786	1.56112	2.4498	4.66944	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062881 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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